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From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology.
- Published in:
- 2024
- By:
- Publication type:
- Letter
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation.
- Published in:
- Journal of Fungi, 2024, v. 10, n. 7, p. 507, doi. 10.3390/jof10070507
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- Publication type:
- Article
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.
- Published in:
- New Phytologist, 2024, v. 242, n. 4, p. 1676, doi. 10.1111/nph.19471
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- Publication type:
- Article
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments.
- Published in:
- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03069-7
- By:
- Publication type:
- Article
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms.
- Published in:
- New Phytologist, 2022, v. 235, n. 1, p. 306, doi. 10.1111/nph.18143
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- Publication type:
- Article
Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 3, p. e17, doi. 10.1093/nar/gkab1115
- By:
- Publication type:
- Article
Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.
- Published in:
- Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7
- By:
- Publication type:
- Article
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27479-y
- By:
- Publication type:
- Article
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
- Published in:
- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02809-4
- By:
- Publication type:
- Article
Pilot study on the effects of low intensity focused ultrasound in a swine model of neuropathic pain.
- Published in:
- Journal of Neurosurgery, 2021, v. 135, n. 5, p. 1508, doi. 10.3171/2020.9.JNS202962
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- Publication type:
- Article
Development of a common peroneal nerve injury model in domestic swine for the study of translational neuropathic pain treatments.
- Published in:
- Journal of Neurosurgery, 2021, v. 135, n. 5, p. 1516, doi. 10.3171/2020.9.JNS202961
- By:
- Publication type:
- Article
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9
- By:
- Publication type:
- Article
Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.
- Published in:
- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632731
- By:
- Publication type:
- Article
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18795-w
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- Publication type:
- Article
Terabase-scale metagenome coassembly with MetaHipMer.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67416-5
- By:
- Publication type:
- Article
A comparative genomics study of 23 Aspergillus species from section Flavi.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14051-y
- By:
- Publication type:
- Article
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
- Published in:
- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0287-z
- By:
- Publication type:
- Article
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
- Published in:
- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
- By:
- Publication type:
- Article
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
- Published in:
- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0141-3
- By:
- Publication type:
- Article
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
- Published in:
- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0132-4
- By:
- Publication type:
- Article
Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.
- Published in:
- Current Microbiology, 2019, v. 76, n. 5, p. 566, doi. 10.1007/s00284-019-01657-0
- By:
- Publication type:
- Article
Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota.
- Published in:
- New Phytologist, 2019, v. 222, n. 1, p. 511, doi. 10.1111/nph.15613
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- Publication type:
- Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 7, p. 660, doi. 10.1038/nbt0718-660a
- By:
- Publication type:
- Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 2, p. 196, doi. 10.1038/nbt0218-196a
- By:
- Publication type:
- Article
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.
- Published in:
- New Phytologist, 2018, v. 217, n. 3, p. 1213, doi. 10.1111/nph.14974
- By:
- Publication type:
- Article
Draft genome of Paraburkholderia caballeronis TNe-841<sup>T</sup>, a free-living, nitrogen-fixing, tomato plant-associated bacterium.
- Published in:
- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0294-7
- By:
- Publication type:
- Article
Draft genome sequence of Actinotignum schaalii DSM 15541<sup>T</sup>: Genetic insights into the lifestyle, cell fitness and virulence.
- Published in:
- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188914
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- Publication type:
- Article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 8, p. 725, doi. 10.1038/nbt.3893
- By:
- Publication type:
- Article
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
- Published in:
- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y
- By:
- Publication type:
- Article
High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.
- Published in:
- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
- By:
- Publication type:
- Article
High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).
- Published in:
- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
- By:
- Publication type:
- Article
Permanent draft genome of Thiobacillus thioparus DSM 505<sup>T</sup>, an obligately chemolithoautotrophic member of the Betaproteobacteria.
- Published in:
- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0229-3
- By:
- Publication type:
- Article
BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1288-y
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- Publication type:
- Article
Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.
- Published in:
- Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
- By:
- Publication type:
- Article
Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2<sup>T</sup>, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.
- Published in:
- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4
- By:
- Publication type:
- Article
An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1<sup>T</sup>.
- Published in:
- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0193-3
- By:
- Publication type:
- Article
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.
- Published in:
- Nature Communications, 2016, v. 7, n. 9, p. 12662, doi. 10.1038/ncomms12662
- By:
- Publication type:
- Article
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.
- Published in:
- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4
- By:
- Publication type:
- Article
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.
- Published in:
- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3
- By:
- Publication type:
- Article
Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2063-6
- By:
- Publication type:
- Article
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1590, doi. 10.1093/gbe/evv090
- By:
- Publication type:
- Article
Reconstructing each cell's genome within complex microbial communities--dream or reality?
- Published in:
- Frontiers in Microbiology, 2015, v. 5, p. 1, doi. 10.3389/fmicb.2014.00771
- By:
- Publication type:
- Article
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.
- Published in:
- New Phytologist, 2014, v. 202, n. 2, p. 554, doi. 10.1111/nph.12653
- By:
- Publication type:
- Article
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
- Published in:
- Nature Methods, 2013, v. 10, n. 6, p. 563, doi. 10.1038/nmeth.2474
- By:
- Publication type:
- Article
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0048837
- By:
- Publication type:
- Article
Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach.
- Published in:
- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029437
- By:
- Publication type:
- Article
One Bacterial Cell, One Complete Genome.
- Published in:
- PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010314
- By:
- Publication type:
- Article
A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production.
- Published in:
- BMC Genomics, 2010, v. 11, p. 680, doi. 10.1186/1471-2164-11-680
- By:
- Publication type:
- Article