Works by Clausen, Philip

Results: 27

A simple method for modelling fatigue spectra of small wind turbine blades.

Published in:

Wind Energy, 2021, v. 24, n. 6, p. 549, doi. 10.1002/we.2588

By:

Evans, Samuel;
Dana, Scott;
Clausen, Philip;
Wood, David

Publication type:

Article

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02014-2

By:

Marcelino, Vanessa R.;
Clausen, Philip T. L. C.;
Buchmann, Jan P.;
Wille, Michelle;
Iredell, Jonathan R.;
Meyer, Wieland;
Lund, Ole;
Sorrell, Tania C.;
Holmes, Edward C.

Publication type:

Article

Cranial performance in the Komodo dragon ( Varanus komodoensis) as revealed by high-resolution 3-D finite element analysis.

Published in:

Journal of Anatomy, 2008, v. 212, n. 6, p. 736, doi. 10.1111/j.1469-7580.2008.00899.x

By:

Moreno, Karen;
Wroe, Stephen;
Clausen, Philip;
McHenry, Colin;
D'Amore, Domenic C.;
Rayfield, Emily J.;
Cunningham, Eleanor

Publication type:

Article

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.

Published in:

Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae086

By:

Martiny, Hannah-Marie;
Pyrounakis, Nikiforos;
Petersen, Thomas N;
Lukjančenko, Oksana;
Aarestrup, Frank M;
Clausen, Philip T L C;
Munk, Patrick

Publication type:

Article

Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining.

Published in:

Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btac774

By:

Clausen, Philip T L C

Publication type:

Article

Automated download and clean-up of family-specific databases for kmer-based virus identification.

Published in:

Bioinformatics, 2021, v. 37, n. 5, p. 705, doi. 10.1093/bioinformatics/btaa857

By:

Allesøe, Rosa L;
Lemvigh, Camilla K;
Phan, My V T;
Clausen, Philip T L C;
Florensa, Alfred F;
Koopmans, Marion P G;
Lund, Ole;
Cotten, Matthew

Publication type:

Article

Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites.

Published in:

Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02464

By:

Johnsen, Camilla Hundahl;
Clausen, Philip T. L. C.;
Aarestrup, Frank M.;
Lund, Ole

Publication type:

Article

CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data.

Published in:

Helicobacter, 2020, v. 25, n. 6, p. 1, doi. 10.1111/hel.12752

By:

Yusibova, Melodi;
Hasman, Henrik;
Clausen, Philip Thomas Lanken Conradsen;
Imkamp, Frank;
Wagner, Karoline;
Andersen, Leif Percival

Publication type:

Article

Rapid and precise alignment of raw reads against redundant databases with KMA.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2336-6

By:

Clausen, Philip T. L. C.;
Aarestrup, Frank M.;
Lund, Ole

Publication type:

Article

A low-cost, high-speed, multi-channel Arduino-based data acquisition system for wind turbine systems.

Published in:

Wind Engineering, 2020, v. 44, n. 5, p. 509, doi. 10.1177/0309524X19862753

By:

Bradney, David;
Evans, Samuel;
Chu, Mu;
Clausen, Philip

Publication type:

Article

A Biomechanical Comparison of Three 1.5-mm Plate and Screw Configurations and a Single 2.0-mm Plate for Internal Fixation of a Mandibular Condylar Fracture.

Published in:

Craniomaxillofacial Trauma & Reconstruction, 2014, v. 7, n. 3, p. 218, doi. 10.1055/s-0034-1375172

By:

Aquilina, Peter;
Parr, William C. H.;
Chamoli, Uphar;
Wroe, Stephen;
Clausen, Philip

Publication type:

Article

High-Resolution Three-Dimensional Computer Simulation of Hominid Cranial Mechanics.

Published in:

Anatomical Record: Advances in Integrative Anatomy & Evolutionary Biology, 2007, v. 290, n. 10, p. 1248, doi. 10.1002/ar.20594

By:

Wroe, Stephen;
Moreno, Karen;
Clausen, Philip;
Mchenry, Colin;
Curnoe, Darren

Publication type:

Article

Biomechanics of the rostrum in crocodilians: A comparative analysis using finite-element modeling.

Published in:

Anatomical Record: Advances in Integrative Anatomy & Evolutionary Biology, 2006, v. 288A, n. 8, p. 827, doi. 10.1002/ar.a.20360

By:

McHenry, Colin R.;
Clausen, Philip D.;
Daniel, William J.T.;
Meers, Mason B.;
Pendharkar, Atul

Publication type:

Article

Back Cover: Conformational Analysis of Fluorinated Pyrrolidines Using 19F-1H Scalar Couplings and Heteronuclear NOEs (Chem. Eur. J. 41/2012).

Published in:

Chemistry - A European Journal, 2012, v. 18, n. 41, p. 13228, doi. 10.1002/chem.201290181

By:

Combettes, Lorraine E.;
Clausen-Thue, Philip;
King, Michael A.;
Odell, Barbara;
Thompson, Amber L.;
Gouverneur, Véronique;
Claridge, Tim D. W.

Publication type:

Article

Conformational Analysis of Fluorinated Pyrrolidines Using 19F-1H Scalar Couplings and Heteronuclear NOEs.

Published in:

Chemistry - A European Journal, 2012, v. 18, n. 41, p. 13133, doi. 10.1002/chem.201201577

By:

Combettes, Lorraine E.;
Clausen-Thue, Philip;
King, Michael A.;
Odell, Barbara;
Thompson, Amber L.;
Gouverneur, Véronique;
Claridge, Tim D. W.

Publication type:

Article

SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae106

By:

Ferrer Florensa, Alfred;
Almagro Armenteros, Jose Juan;
Nielsen, Henrik;
Aarestrup, Frank Møller;
Clausen, Philip Thomas Lanken Conradsen

Publication type:

Article

NanoMGT: Marker gene typing of low complexity mono-species metagenomic samples using noisy long reads.

Published in:

Biology Methods & Protocols, 2024, v. 9, n. 1, p. 1, doi. 10.1093/biomethods/bpae057

By:

Hallgren, Malte B;
Clausen, Philip T L C;
Aarestrup, Frank M

Publication type:

Article

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads.

Published in:

Biology Methods & Protocols, 2021, v. 6, n. 1, p. 1, doi. 10.1093/biomethods/bpab008

By:

Hallgren, Malte B;
Overballe-Petersen, Søren;
Lund, Ole;
Hasman, Henrik;
Clausen, Philip T L C

Publication type:

Article

Determining the performance of a Diffuser Augmented Wind Turbine using a combined CFD/BEM method.

Published in:

Renewable Energy & Environmental Sustainability, 2017, v. 2, p. 1, doi. 10.1051/rees/2017032

By:

Kesby, Joss E.;
Bradney, David R.;
Clausen, Philip D.

Publication type:

Article

A method to optimise the materials layout of small wind turbine blades.

Published in:

Renewable Energy & Environmental Sustainability, 2017, v. 2, p. 1, doi. 10.1051/rees/2017006

By:

Costa, Mariana S.P.;
Evans, Samuel P.;
Bradney, David R.;
Clausen, Philip D.

Publication type:

Article

Improved ontology for eukaryotic single-exon coding sequences in biological databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay089

By:

Jorquera, Roddy;
González, Carolina;
Clausen, Philip;
Petersen, Bent;
Holmes, David S

Publication type:

Article

Comparative Biomechanical Modeling of Metatherian and Placental Saber-Tooths: A Different Kind of Bite for an Extreme Pouched Predator.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066888

By:

Wroe, Stephen;
Chamoli, Uphar;
Parr, William C. H.;
Clausen, Philip;
Ridgely, Ryan;
Witmer, Lawrence

Publication type:

Article

Effects of Gape and Tooth Position on Bite Force and Skull Stress in the Dingo (Canis lupus dingo) Using a 3- Dimensional Finite Element Approach.

Published in:

PLoS ONE, 2008, v. 3, n. 5, p. 1, doi. 10.1371/journal.pone.0002200

By:

Bourke, Jason;
Wroe, Stephen;
Moreno, Karen;
McHenry, Colin;
Clausen, Philip

Publication type:

Article

LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences.

Published in:

2019

By:

Hasman, Henrik;
Clausen, Philip T L C;
Kaya, Hülya;
Hansen, Frank;
Knudsen, Jenny Dahl;
Wang, Mikala;
Holzknecht, Barbara Juliane;
Samulioniené, Jurgita;
Røder, Bent L;
Frimodt-Møller, Niels;
Lund, Ole;
Hammerum, Anette M

Publication type:

journal article

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

Published in:

2016

By:

Clausen, Philip T. L. C.;
Zankari, Ea;
Aarestrup, Frank M.;
Lund, Ole

Publication type:

journal article

Large orb-webs adapted to maximise total biomass not rare, large prey.

Published in:

Scientific Reports, 2015, p. 14121, doi. 10.1038/srep14121

By:

Harmer, Aaron M. T.;
Clausen, Philip D.;
Wroe, Stephen;
Madin, Joshua S.

Publication type:

Article

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08853-3

By:

Hendriksen, Rene S.;
Munk, Patrick;
Njage, Patrick;
van Bunnik, Bram;
McNally, Luke;
Lukjancenko, Oksana;
Röder, Timo;
Nieuwenhuijse, David;
Pedersen, Susanne Karlsmose;
Kjeldgaard, Jette;
Kaas, Rolf S.;
Clausen, Philip Thomas Lanken Conradsen;
Vogt, Josef Korbinian;
Leekitcharoenphon, Pimlapas;
van de Schans, Milou G. M.;
Zuidema, Tina;
de Roda Husman, Ana Maria;
Rasmussen, Simon;
Petersen, Bent;
The Global Sewage Surveillance project consortium

Publication type:

Article

Works by Clausen, Philip

A simple method for modelling fatigue spectra of small wind turbine blades.

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.

Cranial performance in the Komodo dragon ( Varanus komodoensis) as revealed by high-resolution 3-D finite element analysis.

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.

Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining.

Automated download and clean-up of family-specific databases for kmer-based virus identification.

Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites.

CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data.

Rapid and precise alignment of raw reads against redundant databases with KMA.

A low-cost, high-speed, multi-channel Arduino-based data acquisition system for wind turbine systems.

A Biomechanical Comparison of Three 1.5-mm Plate and Screw Configurations and a Single 2.0-mm Plate for Internal Fixation of a Mandibular Condylar Fracture.

High-Resolution Three-Dimensional Computer Simulation of Hominid Cranial Mechanics.

Biomechanics of the rostrum in crocodilians: A comparative analysis using finite-element modeling.

Back Cover: Conformational Analysis of Fluorinated Pyrrolidines Using <sup>19</sup>F-<sup>1</sup>H Scalar Couplings and Heteronuclear NOEs (Chem. Eur. J. 41/2012).

Conformational Analysis of Fluorinated Pyrrolidines Using <sup>19</sup>F-<sup>1</sup>H Scalar Couplings and Heteronuclear NOEs.

SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects.

NanoMGT: Marker gene typing of low complexity mono-species metagenomic samples using noisy long reads.

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads.

Determining the performance of a Diffuser Augmented Wind Turbine using a combined CFD/BEM method.

A method to optimise the materials layout of small wind turbine blades.

Improved ontology for eukaryotic single-exon coding sequences in biological databases.

Comparative Biomechanical Modeling of Metatherian and Placental Saber-Tooths: A Different Kind of Bite for an Extreme Pouched Predator.

Effects of Gape and Tooth Position on Bite Force and Skull Stress in the Dingo (Canis lupus dingo) Using a 3- Dimensional Finite Element Approach.

LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences.

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

Large orb-webs adapted to maximise total biomass not rare, large prey.

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.