Works matching AU Churchill, Gary A.

Results: 157

The impact of co-housing on murine aging studies.

Published in:

GeroScience, 2025, v. 47, n. 3, p. 3095, doi. 10.1007/s11357-024-01480-x

By:

Luciano, Alison;
Churchill, Gary A.

Publication type:

Article

Estimating p-values in small microarray experiments.

Published in:

Bioinformatics, 2007, v. 23, n. 1, p. 38

By:

Gary Churchill

Publication type:

Article

ML‐UrineQuant: A machine learning program for identifying and quantifying mouse urine on absorbent paper.

Published in:

Physiological Reports, 2025, v. 13, n. 6, p. 1, doi. 10.14814/phy2.70243

By:

Hill, Warren G.;
MacIver, Bryce;
Churchill, Gary A.;
DeOliveira, Mariana G.;
Zeidel, Mark L.;
Cicconet, Marcelo

Publication type:

Article

INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02450-8

By:

Dong, Chenyang;
Simonett, Shane P.;
Shin, Sunyoung;
Stapleton, Donnie S.;
Schueler, Kathryn L.;
Churchill, Gary A.;
Lu, Leina;
Liu, Xiaoxiao;
Jin, Fulai;
Li, Yan;
Attie, Alan D.;
Keller, Mark P.;
Keleş, Sündüz

Publication type:

Article

Publisher Correction: Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics.

Published in:

2020

By:

Choi, Kwangbom;
Chen, Yang;
Skelly, Daniel A.;
Churchill, Gary A.

Publication type:

Correction Notice

Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02103-2

By:

Choi, Kwangbom;
Chen, Yang;
Skelly, Daniel A.;
Churchill, Gary A.

Publication type:

Article

Subspecific origin and haplotype diversity in the laboratory mouse.

Published in:

Nature Genetics, 2011, v. 43, n. 7, p. 648, doi. 10.1038/ng.847

By:

Hyuna Yang;
Wang, Jeremy R.;
Didion, John P.;
Buus, Ryan J.;
Bell, Timothy A.;
Welsh, Catherine E.;
Bonhomme, François;
Yu, Alex Hon-Tsen;
Nachman, Michael W.;
Pialek, Jaroslav;
Tucker, Priscilla;
Boursot, Pierre;
McMillan, Leonard;
Churchill, Gary A.;
de Villena, Fernando Pardo-Manuel

Publication type:

Article

On the subspecific origin of the laboratory mouse.

Published in:

Nature Genetics, 2007, v. 39, n. 9, p. 1100, doi. 10.1038/ng2087

By:

Hyuna Yang;
Bell, Timothy A.;
Churchill, Gary A.;
Pardo-Manuel de Villena, Fernando

Publication type:

Article

The Collaborative Cross, a community resource for the genetic analysis of complex traits.

Published in:

2004

By:

Churchill, Gary A;
Airey, David C;
Allayee, Hooman;
Angel, Joe M;
Attie, Alan D;
Beatty, Jackson;
Beavis, William D;
Belknap, John K;
Bennett, Beth;
Berrettini, Wade;
Bleich, Andre;
Bogue, Molly;
Broman, Karl W;
Buck, Kari J;
Buckler, Ed;
Burmeister, Margit;
Chesler, Elissa J;
Cheverud, James M;
Clapcote, Steven;
Cook, Melloni N

Publication type:

Opinion

Fundamentals of experimental design for cDNA microarrays.

Published in:

Nature Genetics, 2002, v. 32, p. 490, doi. 10.1038/ng1031

By:

Churchill, Gary A.

Publication type:

Article

Variation in gene expression within and among natural populations.

Published in:

Nature Genetics, 2002, v. 32, n. 2, p. 261, doi. 10.1038/ng983

By:

Oleksiak, Marjorie F.;
Churchill, Gary A.;
Crawford, Douglas L.

Publication type:

Article

Sex, flies and microarrays.

Published in:

Nature Genetics, 2001, v. 29, n. 4, p. 355, doi. 10.1038/ng1201-355

By:

Churchill, Gary A.;
Oliver, Brian

Publication type:

Article

Integrative Genetic Analysis of Allergic Inflammation in the Murine Lung.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2014, v. 51, n. 3, p. 436, doi. 10.1165/rcmb.2013-0501OC

By:

Kelada, Samir N. P.;
Carpenter, Danielle E.;
Aylor, David L.;
Chines, Peter;
Rutledge, Holly;
Chesler, Elissa J.;
Churchill, Gary A.;
Pardo-Manuel de Villena, Fernando;
Schwartz, David A.;
Collins, Francis S.

Publication type:

Article

Stochastic variation of transcript abundance in C57BL/6J mice.

Published in:

BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-167

By:

Vedell, Peter T;
Svenson, Karen L;
Churchill, Gary A

Publication type:

Article

Stochastic variation of transcript abundance in C57BL/6J mice.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 167, doi. 10.1186/1471-2164-12-167

By:

Vedell, Peter T.;
Svenson, Karen L.;
Churchill, Gary A.

Publication type:

Article

Chromosome Y variants from different inbred mouse strains are linked to differences in the morphologic and molecular responses of cardiac cells to postpubertal testosterone.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-150

By:

Llamas, Bastien;
Verdugo, Ricardo A.;
Churchill, Gary A.;
Deschepper, Christian F.

Publication type:

Article

Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross.

Published in:

PLoS Pathogens, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.ppat.1003196

By:

Ferris, Martin T.;
Aylor, David L.;
Bottomly, Daniel;
Whitmore, Alan C.;
Aicher, Lauri D.;
Bell, Timothy A.;
Bradel-Tretheway, Birgit;
Bryan, Janine T.;
Buus, Ryan J.;
Gralinski, Lisa E.;
Haagmans, Bart L.;
McMillan, Leonard;
Miller, Darla R.;
Rosenzweig, Elizabeth;
Valdar, William;
Wang, Jeremy;
Churchill, Gary A.;
Threadgill, David W.;
McWeeney, Shannon K.;
Katze, Michael G.

Publication type:

Article

Experimental design for three-color and four-color gene expression microarrays.

Published in:

Bioinformatics, 2005, v. 21, p. i459, doi. 10.1093/bioinformatics/bti1031

By:

Woo, Yong;
Krueger, Winfried;
Kaur, Anupinder;
Churchill, Gary

Publication type:

Article

Experimental design for three-color and four-color gene expression microarrays.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i459, doi. 10.1093/bioinformatics/bti1031

By:

Yong Woo;
Winfried Krueger;
Anupinder Kaur;
Gary Churchill

Publication type:

Article

A collaborative database of inbred mouse strain characteristics.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2857, doi. 10.1093/bioinformatics/bth299

By:

Stephen C. Grubb;
Gary A. Churchill;
Molly A. Bogue

Publication type:

Article

Longitudinal fragility phenotyping contributes to the prediction of lifespan and age-associated morbidity in C57BL/6 and Diversity Outbred mice.

Published in:

GeroScience, 2024, v. 46, n. 5, p. 4937, doi. 10.1007/s11357-024-01226-9

By:

Luciano, Alison;
Robinson, Laura;
Garland, Gaven;
Lyons, Bonnie;
Korstanje, Ron;
Di Francesco, Andrea;
Churchill, Gary A.

Publication type:

Article

The Jackson Laboratory Nathan Shock Center: impact of genetic diversity on aging.

Published in:

GeroScience, 2021, v. 43, n. 5, p. 2129, doi. 10.1007/s11357-021-00421-2

By:

Korstanje, Ron;
Peters, Luanne L.;
Robinson, Laura L.;
Krasinski, Stephen D.;
Churchill, Gary A.

Publication type:

Article

Arginine metabolism is a biomarker of red blood cell and human aging.

Published in:

Aging Cell, 2025, v. 24, n. 2, p. 1, doi. 10.1111/acel.14388

By:

Reisz, Julie A.;
Earley, Eric J.;
Nemkov, Travis;
Key, Alicia;
Stephenson, Daniel;
Keele, Gregory R.;
Dzieciatkowska, Monika;
Spitalnik, Steven L.;
Hod, Eldad A.;
Kleinman, Steven;
Roubinian, Nareg H.;
Gladwin, Mark T.;
Hansen, Kirk C.;
Norris, Philip J.;
Busch, Michael P.;
Zimring, James C.;
Churchill, Gary A.;
Page, Grier P.;
D'Alessandro, Angelo

Publication type:

Article

Proteomic and transcriptomic profiling reveal different aspects of aging in the kidney.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.62585

By:

Takemon, Yuka;
Chick, Joel M.;
Gyuricza, Isabela Gerdes;
Skelly, Daniel A.;
Devuyst, Olivier;
Gygi, Steven P.;
Churchill, Gary A.;
Korstanje, Ron

Publication type:

Article

SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03003-x

By:

Wu, Euphy Y.;
Singh, Noor P.;
Choi, Kwangbom;
Zakeri, Mohsen;
Vincent, Matthew;
Churchill, Gary A.;
Ackert-Bicknell, Cheryl L.;
Patro, Rob;
Love, Michael I.

Publication type:

Article

Multi-omics analysis identifies drivers of protein phosphorylation.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02892-2

By:

Zhang, Tian;
Keele, Gregory R.;
Gyuricza, Isabela Gerdes;
Vincent, Matthew;
Brunton, Catherine;
Bell, Timothy A.;
Hock, Pablo;
Shaw, Ginger D.;
Munger, Steven C.;
de Villena, Fernando Pardo-Manuel;
Ferris, Martin T.;
Paulo, Joao A.;
Gygi, Steven P.;
Churchill, Gary A.

Publication type:

Article

Pla2g12b and Hpn Are Genes Identified by Mouse ENU Mutagenesis That Affect HDL Cholesterol.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043139

By:

Aljakna, Aleksandra;
Choi, Seungbum;
Savage, Holly;
Blair, Rachael Hageman;
Gu, Tongjun;
Svenson, Karen L.;
Churchill, Gary A.;
Hibbs, Matt;
Korstanje, Ron;
Einwaechter, Henrik

Publication type:

Article

Coordinated Expression Domains in Mammalian Genomes.

Published in:

PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012158

By:

Woo, Yong H.;
Walker, Michael;
Churchill, Gary A.

Publication type:

Article

Randomization in Laboratory Procedure Is Key to Obtaining Reproducible Microarray Results.

Published in:

PLoS ONE, 2008, v. 3, n. 11, p. 1, doi. 10.1371/journal.pone.0003724

By:

Hyuna Yang;
Harrington, Christina A.;
Vartanian, Kristina;
Coldren, Christopher D.;
Hall, Rob;
Churchill, Gary A.

Publication type:

Article

Quantitative Trait Loci for Femoral and Lumbar Vertebral Bone Mineral Density in C57BL/6J and C3H/HeJ Inbred Strains of Mice.

Published in:

Journal of Bone & Mineral Research, 2001, v. 16, n. 7, p. 1195, doi. 10.1359/jbmr.2001.16.7.1195

By:

Beamer, Wesley G.;
Shultz, Kathryn L.;
Donahue, Leah Rae;
Churchill, Gary A.;
Sen, Saunak;
Wergedal, Jon R.;
Baylink, David J.;
Rosen, Clifford J.

Publication type:

Article

Genetic Modulation of Tau Phosphorylation in the Mouse.

Published in:

Journal of Neuroscience, 2003, v. 23, n. 1, p. 187, doi. 10.1523/JNEUROSCI.23-01-00187.2003

By:

Brich, Jochen;
Feng-Shiun Shie;
Howell, Brian W.;
Ranhua Li;
Tus, Katalin;
Wakeland, Edwad K.;
Lee-Way Jin;
Mumby, Marc;
Churchill, Gary;
Herz, Joachim;
Cooper, Jonathan A.

Publication type:

Article

Apoe dependent loci for urinary albumin in mice.

Published in:

FASEB Journal, 2007, v. 21, n. 6, p. A826

By:

Korstanje, Ron;
Tsaih, Shirng-Wern;
Sheehan, Susan;
Ishimori, Naoki;
Navis, Gerjan;
Churchill, Gary;
Paigen, Beverly;
DiPetrillo, Keith

Publication type:

Article

Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36269-7

By:

Yu, Qing;
Liu, Xinyue;
Keller, Mark P.;
Navarrete-Perea, Jose;
Zhang, Tian;
Fu, Sipei;
Vaites, Laura P.;
Shuken, Steven R.;
Schmid, Ernst;
Keele, Gregory R.;
Li, Jiaming;
Huttlin, Edward L.;
Rashan, Edrees H.;
Simcox, Judith;
Churchill, Gary A.;
Schweppe, Devin K.;
Attie, Alan D.;
Paulo, Joao A.;
Gygi, Steven P.

Publication type:

Article

Natural genetic variation alters Alzheimer's‐related gene expression modules in mice: Development of new models and analysis methods/novel assays and technologies.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.042019

By:

Wells, Ann E.;
Raghupathy, Narayanan;
Robledo, Raymond F.;
Gatti, Daniel M.;
Munger, Steven C.;
Phillips, Charles;
Ndukum, Juliet;
Wilcox, Troy;
Graber, Joel;
Hibbs, Matthew;
Langston, Michael A.;
Churchill, Gary A.;
Carter, Gregory W.;
Chesler, Elissa J

Publication type:

Article

Weak Epistasis Generally Stabilizes Phenotypes in a Mouse Intercross.

Published in:

PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005805

By:

Tyler, Anna L.;
Donahue, Leah Rae;
Churchill, Gary A.;
Carter, Gregory W.

Publication type:

Article

Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross.

Published in:

PLoS Genetics, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pgen.1005504

By:

Gralinski, Lisa E.;
Ferris, Martin T.;
Aylor, David L.;
Whitmore, Alan C.;
Green, Richard;
Frieman, Matthew B.;
Deming, Damon;
Menachery, Vineet D.;
Miller, Darla R.;
Buus, Ryan J.;
Bell, Timothy A.;
Churchill, Gary A.;
Threadgill, David W.;
Katze, Michael G.;
McMillan, Leonard;
Valdar, William;
Heise, Mark T.;
Pardo-Manuel de Villena, Fernando;
Baric, Ralph S.

Publication type:

Article

Sequential Quantitative Trait Locus Mapping in Experimental Crosses.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1264

By:

Satagopan, Jaya M.;
Sen, Saunak;
Churchill, Gary A.

Publication type:

Article

PPARγ2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cells.

Published in:

Journal of Cellular Biochemistry, 2009, v. 106, n. 2, p. 232, doi. 10.1002/jcb.21994

By:

Shockley, Keith R.;
Lazarenko, Oxana P.;
Czernik, Piotr J.;
Rosen, Clifford J.;
Churchill, Gary A.;
Lecka-Czernik, Beata

Publication type:

Article

Accessing Data Resources in the Mouse Phenome Database for Genetic Analysis of Murine Life Span and Health Span.

Published in:

2016

By:

Bogue, Molly A.;
Peters, Luanne L.;
Paigen, Beverly;
Korstanje, Ron;
Yuan, Rong;
Ackert-Bicknell, Cheryl;
Grubb, Stephen C.;
Churchill, Gary A.;
Chesler, Elissa J.

Publication type:

journal article

Genetic Regulation of Female Sexual Maturation and Longevity Through Circulating IGF1.

Published in:

2015

By:

Yuan, Rong;
Gatti, Daniel M;
Krier, Rebecca;
Malay, Ethan;
Schultz, David;
Peters, Luanne L;
Churchill, Gary A;
Harrison, David E;
Paigen, Beverly

Publication type:

journal article

The trouble with triples: Examining the impact of measurement error in mediation analysis.

Published in:

Genetics, 2023, v. 224, n. 1, p. 1, doi. 10.1093/genetics/iyad045

By:

Gastonguay, Madeleine S.;
Keele, Gregory R.;
Churchill, Gary A.

Publication type:

Article

Intermittent fasting and caloric restriction interact with genetics to shape physiological health in mice.

Published in:

Genetics, 2022, v. 220, n. 1, p. 1, doi. 10.1093/genetics/iyab157

By:

Guozhu Zhang;
Deighan, Andrew;
Raj, Anil;
Robinson, Laura;
Donato, Hannah J.;
Garland, Gaven;
Leland, Mackenzie;
Martin-McNulty, Baby;
Kolumam, Ganesh A.;
Riegler, Johannes;
Freund, Adam;
Wright, Kevin M.;
Churchill, Gary A.

Publication type:

Article

R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations.

Published in:

Genetics, 2019, v. 211, n. 2, p. 495, doi. 10.1534/genetics.118.301595

By:

Broman, Karl W.;
Gatti, Daniel M.;
Simecek, Petr;
Furlotte, Nicholas A.;
Prins, Pjotr;
Sen, Śaunak;
Yandell, Brian S.;
Churchill, Gary A.

Publication type:

Article

Genetic Drivers of Pancreatic Islet Function.

Published in:

Genetics, 2018, v. 209, n. 1, p. 335, doi. 10.1534/genetics.118.300864

By:

Keller, Mark P.;
Gatti, Daniel M.;
Schueler, Kathryn L.;
Rabaglia, Mary E.;
Stapleton, Donnie S.;
Simecek, Petr;
Vincent, Matthew;
Allen, Sadie;
Broman, Aimee Teo;
Bacher, Rhonda;
Kendziorski, Christina;
Broman, Karl W.;
Yandell, Brian S.;
Churchill, Gary A.;
Attie, Alan D.

Publication type:

Article

Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice.

Published in:

Genetics, 2017, v. 206, n. 2, p. 621, doi. 10.1534/genetics.116.198051

By:

Tyler, Anna L.;
Bo Ji;
Gatti, Daniel M.;
Munger, Steven C.;
Churchill, Gary A.;
Svenson, Karen L.;
Carter, Gregory W.

Publication type:

Article

Structural Variation Shapes the Landscape of Recombination in Mouse.

Published in:

Genetics, 2017, v. 206, n. 2, p. 603, doi. 10.1534/genetics.116.197988

By:

Morgan, Andrew P.;
Gatti, Daniel M.;
Najarian, Maya L.;
Keane, Thomas M.;
Galante, Raymond J.;
Pack, Allan I.;
Mott, Richard;
Churchill, Gary A.;
de Villena, Fernando Pardo-Manuel

Publication type:

Article

Genomes of the Mouse Collaborative Cross.

Published in:

Genetics, 2017, v. 206, n. 2, p. 537, doi. 10.1534/genetics.116.198838

By:

Srivastava, Anuj;
Morgan, Andrew P.;
Najarian, Maya L.;
Sarsani, Vishal Kumar;
Sigmon, J. Sebastian;
Shorter, John R.;
Kashfeen, Anwica;
McMullan, Rachel C.;
Williams, Lucy H.;
Giusti-Rodríguez, Paola;
Ferris, Martin T.;
Sullivan, Patrick;
Hock, Pablo;
Miller, Darla R.;
Bell, Timothy A.;
McMillan, Leonard;
Churchill, Gary A.;
de Villena, Fernando Pardo-Manuel

Publication type:

Article

Eric Lander and David Botstein on Mapping Quantitative Traits.

Published in:

Genetics, 2016, v. 203, n. 1, p. 1, doi. 10.1534/genetics.116.189803

By:

Churchill, Gary A.

Publication type:

Article

Genetic Architectures of Quantitative Variation in RNA Editing Pathways.

Published in:

Genetics, 2016, v. 202, n. 2, p. 787, doi. 10.1534/genetics.115.179481

By:

Tongjun Gu;
Gatti, Daniel M.;
Srivastava, Anuj;
Snyder, Elizabeth M.;
Raghupathy, Narayanan;
Simecek, Petr;
Svenson, Karen L.;
Dotu, Ivan;
Chuang, Jeffrey H.;
Keller, Mark P.;
Attie, Alan D.;
Braun, Robert E.;
Churchill, Gary A.

Publication type:

Article

Genetic Regulation of Zfp30, CXCL1, and Neutrophilic Inflammation in Murine Lung.

Published in:

Genetics, 2014, v. 198, n. 2, p. 735, doi. 10.1534/genetics.114.168138

By:

Rutledge, Holly;
Aylor, David L.;
Carpenter, Danielle E.;
Peck, Bailey C.;
Chines, Peter;
Ostrowski, Lawrence E.;
Chesler, Elissa J.;
Churchill, Gary A.;
Pardo-Manuel de Villena, Fernando;
Kelada, Samir N. P.

Publication type:

Article