Works by Church, George M.

Results: 213

A Bacterial Strain with a Unique Quadruplet Codon Specifying Non-native Amino Acids.

Published in:

ChemBioChem, 2014, v. 15, n. 12, p. 1782, doi. 10.1002/cbic.201402104

By:

Chatterjee, Abhishek;
Lajoie, Marc J.;
Xiao, Han;
Church, George M.;
Schultz, Peter G.

Publication type:

Article

A new dawn for industrial photosynthesis.

Published in:

Photosynthesis Research, 2011, v. 107, n. 3, p. 269, doi. 10.1007/s11120-011-9631-7

By:

Robertson, Dan E.;
Jacobson, Stuart A.;
Morgan, Frederick;
Berry, David;
Church, George M.;
Afeyan, Noubar B.

Publication type:

Article

Digital quantitative measurements of gene expression.

Published in:

Biotechnology & Bioengineering, 2004, v. 86, n. 2, p. 117, doi. 10.1002/bit.20048

By:

Mikkilineni, Venugopal;
Mitra, Robi D.;
Merritt, Joshua;
DiTonno, Jason R.;
Church, George M.;
Ogunnaike, Babatunde;
Edwards, Jeremy S.

Publication type:

Article

Cell-type-specific contacts to immunoglobulin enhancers in nuclei.

Published in:

Nature, 1985, v. 313, n. 6005, p. 798, doi. 10.1038/313798a0

By:

Church, George M.;
Ephrussi, Anne;
Gilbert, Walter;
Tonegawa, Susumu

Publication type:

Article

A Proposal to Sequence Genomes of Unique Interest for Research on Aging.

Published in:

Journals of Gerontology Series A: Biological Sciences & Medical Sciences, 2007, v. 62, n. 6, p. 583, doi. 10.1093/gerona/62.6.583

By:

De Magalhães, João Pedro;
Sedivy, John M.;
Finch, Caleb E.;
Austad, Steven N.;
Church, George M.

Publication type:

Article

An Analysis of the Relationship Between Metabolism, Developmental Schedules, and Longevity Using Phylogenetic Independent Contrasts.

Published in:

Journals of Gerontology Series A: Biological Sciences & Medical Sciences, 2007, v. 62, n. 2, p. 149, doi. 10.1093/gerona/62.2.149

By:

De Magalhães, João Pedro;
Costa, Joana;
Church, George M.

Publication type:

Article

Comprehensive mutagenesis maps the effect of all single-codon mutations in the AAV2 rep gene on AAV production.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.87730

By:

Jain, Nina K.;
Ogden, Pierce J.;
Church, George M.

Publication type:

Article

Improved isolation of extracellular vesicles by removal of both free proteins and lipoproteins.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.86394

By:

Ter-Ovanesyan, Dmitry;
Gilboa, Tal;
Budnik, Bogdan;
Nikitina, Adele;
Whiteman, Sara;
Lazarovits, Roey;
Trieu, Wendy;
Kalish, David;
Church, George M.;
Walt, David R.

Publication type:

Article

The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes.

Published in:

GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0148-z

By:

Qing Mao;
Ciotlos, Serban;
Yu Zhang, Rebecca;
Ball, Madeleine P.;
Chin, Robert;
Carnevali, Paolo;
Barua, Nina;
Nguyen, Staci;
Agarwal, Misha R.;
Clegg, Tom;
Connelly, Abram;
Vandewege, Ward;
Wait Zaranek, Alexander;
Estep, Preston W.;
Church, George M.;
Drmanac, Radoje;
Peters, Brock A.

Publication type:

Article

Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA.

Published in:

Nature Chemistry, 2012, v. 4, n. 10, p. 832, doi. 10.1038/nchem.1451

By:

Lin, Chenxiang;
Jungmann, Ralf;
Leifer, Andrew M.;
Li, Chao;
Levner, Daniel;
Church, George M.;
Shih, William M.;
Yin, Peng

Publication type:

Article

Sequencing genomes from single cells by polymerase cloning.

Published in:

Nature Biotechnology, 2006, v. 24, n. 6, p. 680, doi. 10.1038/nbt1214

By:

Kun Zhang;
Martiny, Adam C.;
Reppas, Nikos B.;
Barry, Kerrie W.;
Malek, Joel;
Chisholm, Sallie W.;
Church, George M.

Publication type:

Article

Assessing computational tools for the discovery of transcription factor binding sites.

Published in:

Nature Biotechnology, 2005, v. 23, n. 1, p. 137, doi. 10.1038/nbt1053

By:

Tompa, Martin;
Li, Nan;
Bailey, Timothy L.;
Church, George M.;
De Moor, Bart;
Eskin, Eleazar;
Favorov, Alexander V.;
Frith, Martin C.;
Fu, Yutao;
Kent, W. James;
Makeev, Vsevolod J.;
Mironov, Andrei A.;
Noble, William Stafford;
Pavesi, Giulio;
Pesole, Graziano;
Régnier, Mireille;
Simonis, Nicolas;
Sinha, Saurabh;
Thijs, Gert;
van Helden, Jacques

Publication type:

Article

An open-source oligomicroarray standard for human and mouse.

Published in:

Nature Biotechnology, 2002, v. 20, n. 11, p. 1082, doi. 10.1038/nbt1102-1082

By:

Wright, Matthew A.;
Church, George M.

Publication type:

Article

Selection analyses of insertional mutants using subgenic-resolution arrays.

Published in:

Nature Biotechnology, 2001, v. 19, n. 11, p. 1060, doi. 10.1038/nbt1101-1060

By:

Badarinarayana, Vasudeo;
Estep, Preston W.;
Shendure, Jay;
Edwards, Jeremy;
Tavazoie, Saeed;
Lam, Felix;
Church, George M.

Publication type:

Article

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array.

Published in:

Nature Biotechnology, 2000, v. 18, n. 12, p. 1262, doi. 10.1038/82367

By:

Selinger, Douglas W.;
Cheung, Kevin J.;
Mei, Rui;
Johansson, Erik M.;
Richmond, Craig S.;
Blattner, Frederick R.;
Lockhart, David J.;
Church, George M.

Publication type:

Article

Quantifying DNA?protein interactions by double-stranded DNA arrays.

Published in:

Nature Biotechnology, 1999, v. 17, n. 6, p. 573, doi. 10.1038/9878

By:

Bulyk, Martha L.;
Gentalen, Erik;
Lockhart, David J.;
Church, George M.

Publication type:

Article

Single‐cell spatial and non‐spatial RNA sequencing on herpes simplex virus 1 (HSV‐1) infected 2D and 3D cerebral organoids reveal molecular granularity on virus‐human gene interactions in Alzheimer's disease.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, p. 1, doi. 10.1002/alz.092866

By:

Dawes, Pepper;
Barton, Nathaniel J;
Orszulak, Adrian R;
Chigas, Samantha M;
Tran, Khanh;
Sundstrom, Jonathan;
Olson, Meagan N;
Murray, Liam F;
Oh, HyungSuk;
Church, George M;
Knipe, David M;
Readhead, Benjamin;
Chan, Yingleong;
Lim, Elaine T

Publication type:

Article

Transcriptomics‐based investigation of herpes simplex virus 1 infections and acyclovir treatment in human cerebral organoids.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.082321

By:

Orszulak, Adrian R;
Chigas, Samantha M;
Tran, Khanh;
Dawes, Pepper;
Olson, Meagan N;
Murray, Liam F;
Barton, Nathaniel J;
Aylward, Aimee J;
Wang, Qi;
Oh, HyungSuk;
Church, George M;
Young‐Pearse, Tracy;
Knipe, David M;
Readhead, Benjamin;
Chan, Yingleong;
Lim, Elaine T

Publication type:

Article

Uncovering the dynamics and consequences of RNA isoform changes during neuronal differentiation.

Published in:

Molecular Systems Biology, 2024, v. 20, n. 7, p. 767, doi. 10.1038/s44320-024-00039-4

By:

Ulicevic, Jelena;
Shao, Zhihao;
Jasnovidova, Olga;
Bressin, Annkatrin;
Gajos, Martyna;
Ng, Alex HM;
Annaldasula, Siddharth;
Meierhofer, David;
Church, George M;
Busskamp, Volker;
Mayer, Andreas

Publication type:

Article

Proteogenomic mapping as a complementary method to perform genome annotation.

Published in:

Proteomics, 2004, v. 4, n. 1, p. 59, doi. 10.1002/pmic.200300511

By:

Jacob D. Jaffe;
Howard C. Berg;
George M. Church

Publication type:

Article

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution.

Published in:

2007

By:

Lindell, Debbie;
Jaffe, Jacob D.;
Coleman, Maureen L.;
Futschik, Matthias E.;
Axmann, Ilka M.;
Rector, Trent;
Kettler, Gregory;
Sullivan, Matthew B.;
Steen, Robert;
Hess, Wolfgang R.;
Church, George M.;
Chisholm, Sallie W.

Publication type:

Letter

Photosynthesis genes in marine viruses yield proteins during host infection.

Published in:

Nature, 2005, v. 438, n. 7064, p. 86, doi. 10.1038/nature04111

By:

Lindell, Debbie;
Jaffe, Jacob D.;
Johnson, Zackary I.;
Church, George M.;
Chisholm, Sallie W.

Publication type:

Article

Targeted intracellular degradation of SARS-CoV-2 via computationally optimized peptide fusions.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01470-7

By:

Chatterjee, Pranam;
Ponnapati, Manvitha;
Kramme, Christian;
Plesa, Alexandru M.;
Church, George M.;
Jacobson, Joseph M.

Publication type:

Article

Benchmarking evolutionary tinkering underlying human–viral molecular mimicry shows multiple host pulmonary–arterial peptides mimicked by SARS-CoV-2.

Published in:

Cell Death Discovery, 2020, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41420-020-00321-y

By:

Venkatakrishnan, A. J.;
Kayal, Nikhil;
Anand, Praveen;
Badley, Andrew D.;
Church, George M.;
Soundararajan, Venky

Publication type:

Article

Assessing contemporary Arctic habitat availability for a woolly mammoth proxy.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-60442-7

By:

Poquérusse, Jessie;
Brown, Casey Lance;
Gaillard, Camille;
Doughty, Chris;
Dalén, Love;
Gallagher, Austin J.;
Wooller, Matthew;
Zimov, Nikita;
Church, George M.;
Lamm, Ben;
Hysolli, Eriona

Publication type:

Article

Herpes Simplex Virus 1 Infection of Human Brain Organoids and Pancreatic Stem Cell-Islets Drives Organoid-Specific Transcripts Associated with Alzheimer's Disease and Autoimmune Diseases.

Published in:

Cells (2073-4409), 2024, v. 13, n. 23, p. 1978, doi. 10.3390/cells13231978

By:

Sundstrom, Jonathan;
Vanderleeden, Emma;
Barton, Nathaniel J.;
Redick, Sambra D.;
Dawes, Pepper;
Murray, Liam F.;
Olson, Meagan N.;
Tran, Khanh;
Chigas, Samantha M.;
Orszulak, Adrian R.;
Church, George M.;
Readhead, Benjamin;
Oh, Hyung Suk;
Harlan, David M.;
Knipe, David M.;
Wang, Jennifer P.;
Chan, Yingleong;
Lim, Elaine T.

Publication type:

Article

Regulatory network of acid resistance genes in Escherichia coli.

Published in:

Molecular Microbiology, 2003, v. 48, n. 3, p. 699, doi. 10.1046/j.1365-2958.2003.03477.x

By:

Masuda, Nobuhisa;
Church, George M.

Publication type:

Article

MicroCorrespondence.

Published in:

Molecular Microbiology, 1999, v. 32, n. 1, p. 217

By:

Collins, Richard;
Achtman, Mark;
Ford, Robert;
Bullough, Per;
Derrick, Jeremy;
McGuire, Abigail M.;
De Wulf, Peter;
Church, George M.;
Lin, E.C.C.

Publication type:

Article

Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4336, doi. 10.1093/nar/gkt135

By:

DiCarlo, James E.;
Norville, Julie E.;
Mali, Prashant;
Rios, Xavier;
Aach, John;
Church, George M.

Publication type:

Article

Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 17, p. e132, doi. 10.1093/nar/gks455

By:

Carr, Peter A.;
Wang, Harris H.;
Sterling, Bram;
Isaacs, Farren J.;
Lajoie, Marc J.;
Xu, George;
Church, George M.;
Jacobson, Joseph M.

Publication type:

Article

Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e117, doi. 10.1093/nar/gks624

By:

Briggs, Adrian W.;
Rios, Xavier;
Chari, Raj;
Yang, Luhan;
Zhang, Feng;
Mali, Prashant;
Church, George M.

Publication type:

Article

Evidence for large diversity in the human transcriptome created by Alu RNA editing.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 20, p. 6905, doi. 10.1093/nar/gkp729

By:

Barak, Michal;
Levanon, Erez Y.;
Eisenberg, Eli;
Paz, Nurit;
Rechavi, Gideon;
Church, George M.;
Mehr, Ramit

Publication type:

Article

Rapid prototyping of 3D DNA-origami shapes with caDNAno.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 15, p. 5001, doi. 10.1093/nar/gkp436

By:

Douglas, Shawn M.;
Marblestone, Adam H.;
Teerapittayanon, Surat;
Vazquez, Alejandro;
Church, George M.;
Shih, William M.

Publication type:

Article

yMGV: a cross‐species expression data mining tool.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d323

By:

Lelandais, Gaëlle;
Le Crom, Stéphane;
Devaux, Frédéric;
Vialette, Stéphane;
Church, George M.;
Jacq, Claude;
Marc, Philippe

Publication type:

Article

Parallel competition analysis of Saccharomyces cerevisiae strains differing by a single base using polymerase colonies.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 15, p. e84, doi. 10.1093/nar/gng084

By:

Merritt, Joshua;
DiTonno, Jason R.;
Mitra, Robi D.;
Church, George M.;
Edwards, Jeremy S.

Publication type:

Article

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 5, p. 1255, doi. 10.1093/nar/30.5.1255

By:

Bulyk, Martha L.;
Johnson, Philip L. F.;
Church, George M.

Publication type:

Article

Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30968-3

By:

Lim, Elaine T.;
Chan, Yingleong;
Dawes, Pepper;
Guo, Xiaoge;
Erdin, Serkan;
Tai, Derek J. C.;
Liu, Songlei;
Reichert, Julia M.;
Burns, Mannix J.;
Chan, Ying Kai;
Chiang, Jessica J.;
Meyer, Katharina;
Zhang, Xiaochang;
Walsh, Christopher A.;
Yankner, Bruce A.;
Raychaudhuri, Soumya;
Hirschhorn, Joel N.;
Gusella, James F.;
Talkowski, Michael E.;
Church, George M.

Publication type:

Article

Designing efficient genetic code expansion in Bacillus subtilis to gain biological insights.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25691-4

By:

Stork, Devon A.;
Squyres, Georgia R.;
Kuru, Erkin;
Gromek, Katarzyna A.;
Rittichier, Jonathan;
Jog, Aditya;
Burton, Briana M.;
Church, George M.;
Garner, Ethan C.;
Kunjapur, Aditya M.

Publication type:

Article

Millstone: software for multiplex microbial genome analysis and engineering.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1223-1

By:

Goodman, Daniel B.;
Kuznetsov, Gleb;
Lajoie, Marc J.;
Ahern, Brian W.;
Napolitano, Michael G.;
Chen, Kevin Y.;
Changping Chen;
Church, George M.

Publication type:

Article

Optimizing complex phenotypes through model-guided multiplex genome engineering.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1217-z

By:

Kuznetsov, Gleb;
Goodman, Daniel B.;
Filsinger, Gabriel T.;
Landon, Matthieu;
Rohland, Nadin;
Aach, John;
Lajoie, Marc J.;
Church, George M.

Publication type:

Article

Spatial Sequencing: A Perspective.

Published in:

Journal of Biomolecular Techniques, 2020, v. 31, n. 2, p. 44, doi. 10.7171/jbt.20-3102-003

By:

Turczyk, Brian M.;
Busby, Michele;
Martin, Allison L.;
Daugharthy, Evan R.;
Myung, Daniel;
Terry, Richard C.;
Inverso, Samuel A.;
Kohman, Richie E.;
Church, George M.

Publication type:

Article

Cushing's syndrome mutant PKA<sup>L</sup><sup>205R</sup> exhibits altered substrate specificity.

Published in:

FEBS Letters, 2017, v. 591, n. 3, p. 459, doi. 10.1002/1873-3468.12562

By:

Lubner, Joshua M.;
Dodge-Kafka, Kimberly L.;
Carlson, Cathrine R.;
Church, George M.;
Chou, Michael F.;
Schwartz, Daniel

Publication type:

Article

Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants.

Published in:

Nature Genetics, 2006, v. 38, n. 10, p. 1216, doi. 10.1038/ng1888

By:

Derti, Adnan;
Roth, Frederick P.;
Church, George M.;
Wu, C-ting

Publication type:

Article

Long-range polony haplotyping of individual human chromosome molecules.

Published in:

Nature Genetics, 2006, v. 38, n. 3, p. 382, doi. 10.1038/ng1741

By:

Kun Zhang;
Jun Zhu;
Shendure, Jay;
Porreca, Gregory J.;
Aach, John D.;
Mitra, Robi D.;
Church, George M.

Publication type:

Article

Modular epistasis in yeast metabolism.

Published in:

Nature Genetics, 2005, v. 37, n. 1, p. 77, doi. 10.1038/ng1489

By:

Segrè, Daniel;
DeLuna, Alexander;
Church, George M.;
Kishony, Roy

Publication type:

Article

Reply to "Does mapping reveal correlation between gene expression and protein–protein interaction?".

Published in:

Nature Genetics, 2003, v. 33, n. 1, p. 16, doi. 10.1038/ng0103-16

By:

Ge, Hui;
Liu, Zhihua;
Church, George M.;
Vidal, Marc

Publication type:

Article

Identification of foreign gene sequences by transcript filtering against the human genome.

Published in:

Nature Genetics, 2002, v. 30, n. 2, p. 141, doi. 10.1038/ng818

By:

Weber, Griffin;
Shendure, Jay;
Tanenbaum, David M.;
Church, George M.;
Meyerson, Matthew

Publication type:

Article

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.

Published in:

Nature Genetics, 2001, v. 29, n. 4, p. 482, doi. 10.1038/ng776

By:

Ge, Hui;
Liu, Zhihua;
Church, George M.;
Vidal, Marc

Publication type:

Article

Identifying regulatory networks by combinatorial analysis of promoter elements.

Published in:

Nature Genetics, 2001, v. 29, n. 2, p. 153, doi. 10.1038/ng724

By:

Pilpel, Yitzhak;
Sudarsanam, Priya;
Church, George M.

Publication type:

Article

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression.

Published in:

Nature Genetics, 2000, v. 26, n. 2, p. 183, doi. 10.1038/79896

By:

Cohen, Barak A.;
Mitra, Robi D.;
Hughes, Jason D.;
Church, George M.

Publication type:

Article