Works matching AU Chung, Ho-Ryun

Results: 21

Inferring nucleosome positions with their histone mark annotation from ChIP data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2547, doi. 10.1093/bioinformatics/btt449

By:

Mammana, Alessandro;
Vingron, Martin;
Chung, Ho-Ryun

Publication type:

Article

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1024, doi. 10.1093/bioinformatics/bts064

By:

Sun, Ruping;
Love, Michael I.;
Zemojtel, Tomasz;
Emde, Anne-Katrin;
Chung, Ho-Ryun;
Vingron, Martin;
Haas, Stefan A.

Publication type:

Article

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006372

By:

van Bömmel, Alena;
Love, Michael I.;
Chung, Ho-Ryun;
Vingron, Martin

Publication type:

Article

The long non-coding RNA NEAT1 contributes to aberrant STAT3 signaling in pancreatic cancer and is regulated by a metalloprotease-disintegrin ADAM8/miR-181a-5p axis.

Published in:

Cellular Oncology (2211-3428), 2025, v. 48, n. 2, p. 391, doi. 10.1007/s13402-024-01001-0

By:

Gao, Yutong;
Zandieh, Kimia;
Zhao, Kai;
Khizanishvili, Natalia;
Fazio, Pietro Di;
Yu, Xiangdi;
Schulte, Leon;
Aillaud, Michelle;
Chung, Ho-Ryun;
Ball, Zachary;
Meixner, Marion;
Bauer, Uta-Maria;
Bartsch, Detlef Klaus;
Buchholz, Malte;
Lauth, Matthias;
Nimsky, Christopher;
Cook, Lena;
Bartsch, Jörg W.

Publication type:

Article

Alterations in the hepatocyte epigenetic landscape in steatosis.

Published in:

Epigenetics & Chromatin, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13072-023-00504-8

By:

Maji, Ranjan Kumar;
Czepukojc, Beate;
Scherer, Michael;
Tierling, Sascha;
Cadenas, Cristina;
Gianmoena, Kathrin;
Gasparoni, Nina;
Nordström, Karl;
Gasparoni, Gilles;
Laggai, Stephan;
Yang, Xinyi;
Sinha, Anupam;
Ebert, Peter;
Falk-Paulsen, Maren;
Kinkley, Sarah;
Hoppstädter, Jessica;
Chung, Ho-Ryun;
Rosenstiel, Philip;
Hengstler, Jan G.;
Walter, Jörn

Publication type:

Article

EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications.

Published in:

Epigenetics & Chromatin, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13072-020-00341-z

By:

Sahu, Anshupa;
Li, Na;
Dunkel, Ilona;
Chung, Ho-Ryun

Publication type:

Article

Mass cytometry‐based identification of a unique T‐cell signature in childhood allergic asthma.

Published in:

Allergy, 2022, v. 77, n. 1, p. 313, doi. 10.1111/all.15110

By:

Raifer, Hartmann;
Schulz, Axel R.;
Theodorou, Johanna;
Romero‐Olmedo, Addi J.;
Böck, Andreas;
Bertrams, Wilhelm;
Schmeck, Bernd T.;
Chung, Ho‐Ryun;
Lohoff, Michael;
Chang, Hyun‐Dong;
Schaub, Bianca;
Mei, Henrik E.;
Huber, Magdalena

Publication type:

Article

Lactate induces metabolic and epigenetic reprogramming of pro‐inflammatory Th17 cells.

Published in:

EMBO Reports, 2022, v. 23, n. 12, p. 1, doi. 10.15252/embr.202254685

By:

Lopez Krol, Aleksandra;
Nehring, Hannah P;
Krause, Felix F;
Wempe, Anne;
Raifer, Hartmann;
Nist, Andrea;
Stiewe, Thorsten;
Bertrams, Wilhelm;
Schmeck, Bernd;
Luu, Maik;
Leister, Hanna;
Chung, Ho‐Ryun;
Bauer, Uta‐Maria;
Adhikary, Till;
Visekruna, Alexander

Publication type:

Article

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003168

By:

Lasserre, Julia;
Chung, Ho-Ryun;
Vingron, Martin

Publication type:

Article

Prevalence of SARS-CoV-2 antibodies in hospital employees, Central Germany.

Published in:

Journal of Laboratory Medicine, 2022, v. 46, n. 1, p. 61, doi. 10.1515/labmed-2021-0107

By:

Keller, Christian;
Chung, Ho-Ryun;
Jerrentrup, Andreas;
Feldmann, Leah;
Rohde, Cornelius;
Halwe, Sandro;
Wölfel, Friederike;
Günther, Susanne;
Renz, Harald

Publication type:

Article

Dissecting the role of toll‐like receptor 7 in pancreatic cancer.

Published in:

Cancer Medicine, 2023, v. 12, n. 7, p. 8542, doi. 10.1002/cam4.5606

By:

Stark, Maren;
Nicolai, Marina;
Tatura, Marina;
Keber, Corinna U.;
Kaufmann, Andreas;
Chung, Ho‐Ryun;
Slater, Emily P.;
Heeschen, Christopher;
Lawlor, Rita T.;
Scarpa, Aldo;
Bartsch, Detlef K.;
Gress, Thomas M.;
Bauer, Stefan;
Buchholz, Malte

Publication type:

Article

Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12178, doi. 10.1093/nar/gkab1100

By:

Glaser, Laura V;
Steiger, Mara;
Fuchs, Alisa;
van Bömmel, Alena;
Einfeldt, Edda;
Chung, Ho-Ryun;
Vingron, Martin;
Meijsing, Sebastiaan H

Publication type:

Article

Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 7, p. 3856, doi. 10.1093/nar/gkab185

By:

Kulik, Marina;
Bothe, Melissa;
Kibar, Gözde;
Fuchs, Alisa;
Schöne, Stefanie;
Prekovic, Stefan;
Mayayo-Peralta, Isabel;
Chung, Ho-Ryun;
Zwart, Wilbert;
Helsen, Christine;
Claessens, Frank;
Meijsing, Sebastiaan H

Publication type:

Article

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3258, doi. 10.1093/nar/gky122

By:

Thormann, Verena;
Rothkegel, Maika C;
Schöpflin, Robert;
Glaser, Laura V;
Djuric, Petar;
Li, Na;
Chung, Ho-Ryun;
Schwahn, Kevin;
Vingron, Martin;
Meijsing, Sebastiaan H

Publication type:

Article

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2868, doi. 10.1093/nar/gky051

By:

Thormann, Verena;
Rothkegel, Maika C;
Schöpflin, Robert;
Glaser, Laura V;
Djuric, Petar;
Li, Na;
Chung, Ho-Ryun;
Schwahn, Kevin;
Vingron, Martin;
Meijsing, Sebastiaan H

Publication type:

Article

reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4<sup>+</sup> memory T cells.

Published in:

Nature Communications, 2016, v. 7, n. 8, p. 12514, doi. 10.1038/ncomms12514

By:

Kinkley, Sarah;
Helmuth, Johannes;
Polansky, Julia K.;
Dunkel, Ilona;
Gasparoni, Gilles;
Fröhler, Sebastian;
Chen, Wei;
Walter, Jörn;
Hamann, Alf;
Chung, Ho-Ryun

Publication type:

Article

Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila.

Published in:

EMBO Reports, 2002, v. 3, n. 12, p. 1158, doi. 10.1093/embo-reports/kvf243

By:

Chung, Ho-Ryun;
Schäfer, Ulrich;
Jäckle, Herbert;
Böhm, Siegfried

Publication type:

Article

Timing of Blood Sample Processing Affects the Transcriptomic and Epigenomic Profiles in CD4 + T-cells of Atopic Subjects.

Published in:

Cells (2073-4409), 2022, v. 11, n. 19, p. 2958, doi. 10.3390/cells11192958

By:

Alhamdan, Fahd;
Laubhahn, Kristina;
Happle, Christine;
Habener, Anika;
Jirmo, Adan C.;
Thölken, Clemens;
Conca, Raffaele;
Chung, Ho-Ryun;
Hansen, Gesine;
Potaczek, Daniel P.;
Schaub, Bianca;
Grychtol, Ruth;
Garn, Holger

Publication type:

Article

Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 151, doi. 10.1186/s13059-015-0708-z

By:

Mammana, Alessandro;
Chung, Ho-Ryun

Publication type:

Article

C1q/TNF-Related Protein 3 (CTRP-3) Deficiency of Adipocytes Affects White Adipose Tissue Mass but Not Systemic CTRP-3 Concentrations.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 4, p. 1670, doi. 10.3390/ijms22041670

By:

Schmid, Andreas;
Roderfeld, Martin;
Gehl, Jonas;
Roeb, Elke;
Nist, Andrea;
Chung, Ho-Ryun;
Stiewe, Thorsten;
Karrasch, Thomas;
Schäffler, Andreas;
Brzozowski, Tomasz

Publication type:

Article

Lineage-specific expansion of the Zinc Finger Associated Domain ZAD.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 9, p. 1934, doi. 10.1093/molbev/msm121

By:

Chung, Ho-Ryun;
Löhr, Ulrike;
Jäckle, Herbert

Publication type:

Article