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Deciphering the role of immune cell composition in epigenetic age acceleration: Insights from cell‐type deconvolution applied to human blood epigenetic clocks.
- Published in:
- Aging Cell, 2024, v. 23, n. 3, p. 1, doi. 10.1111/acel.14071
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- Article
Maternal–Infant Factors in Relation to Extracellular Vesicle and Particle miRNA in Prenatal Plasma and in Postpartum Human Milk.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 3, p. 1538, doi. 10.3390/ijms25031538
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- Article
Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer.
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- Clinical Epigenetics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13148-023-01609-3
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- Article
Intraoperative margin assessment for basal cell carcinoma with deep learning and histologic tumor mapping to surgical site.
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- NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-023-00477-7
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- Publication type:
- Article
A deep learning algorithm to detect cutaneous squamous cell carcinoma on frozen sections in Mohs micrographic surgery: A retrospective assessment.
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- Experimental Dermatology, 2024, v. 33, n. 1, p. 1, doi. 10.1111/exd.14949
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- Article
Large‐scale validation study of an improved semiautonomous urine cytology assessment tool: AutoParis‐X.
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- Cancer Cytopathology, 2023, v. 131, n. 10, p. 637, doi. 10.1002/cncy.22732
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- Article
Examining longitudinal markers of bladder cancer recurrence through a semiautonomous machine learning system for quantifying specimen atypia from urine cytology.
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- Cancer Cytopathology, 2023, v. 131, n. 9, p. 561, doi. 10.1002/cncy.22725
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- Article
Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication.
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- BioData Mining, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13040-023-00338-w
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- Article
Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation.
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- Frontiers in Neuroscience, 2023, p. 1, doi. 10.3389/fnins.2023.1198243
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- Article
HiTAIC: hierarchical tumor artificial intelligence classifier traces tissue of origin and tumor type in primary and metastasized tumors using DNA methylation.
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- NAR Cancer, 2023, v. 5, n. 2, p. 1, doi. 10.1093/narcan/zcad017
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- Article
The Effect of Lung Resection for NSCLC on Circulating Immune Cells: A Pilot Study.
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- Current Oncology, 2023, v. 30, n. 5, p. 5116, doi. 10.3390/curroncol30050387
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- Article
Video-Based Deep Learning to Detect Dyssynergic Defecation with 3D High-Definition Anorectal Manometry.
- Published in:
- Digestive Diseases & Sciences, 2023, v. 68, n. 5, p. 2015, doi. 10.1007/s10620-022-07759-3
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- Article
Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life.
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- Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1164553
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- Article
Assessment of immune cell profiles among post-menopausal women in the Women's Health Initiative using DNA methylation-based methods.
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- Clinical Epigenetics, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13148-023-01488-8
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- Publication type:
- Article
Down Syndrome Altered Cell Composition in Blood, Brain, and Buccal Swab Samples Profiled by DNA-Methylation-Based Cell-Type Deconvolution.
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- Cells (2073-4409), 2023, v. 12, n. 8, p. 1168, doi. 10.3390/cells12081168
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- Article
Lineage plasticity enables low-ER luminal tumors to evolve and gain basal-like traits.
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- Breast Cancer Research, 2023, v. 25, n. 1, p. 1, doi. 10.1186/s13058-023-01621-8
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- Article
DNA methylation biomarkers for noninvasive detection of triple‐negative breast cancer using liquid biopsy.
- Published in:
- International Journal of Cancer, 2023, v. 152, n. 5, p. 1025, doi. 10.1002/ijc.34337
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- Article
Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.
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- Journal of Pathology Informatics, 2023, v. 14, p. 1, doi. 10.1016/j.jpi.2023.100308
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- Article
Comparative analysis of the DNA methylation landscape in CD4, CD8, and B memory lineages.
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- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01399-0
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- Publication type:
- Article
HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data.
- Published in:
- 2022
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- Publication type:
- journal article
Evaluation of cross-platform compatibility of a DNA methylation-based glucocorticoid response biomarker.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01352-1
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- Article
DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33215-x
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- Article
Widespread redundancy in -omics profiles of cancer mutation states.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02705-y
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- Publication type:
- Article
MarZIC: A Marginal Mediation Model for Zero-Inflated Compositional Mediators with Applications to Microbiome Data.
- Published in:
- Genes, 2022, v. 13, n. 6, p. 1049, doi. 10.3390/genes13061049
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- Article
Human cytomegalovirus alters immune cell profile with potential implications for patient survival in head and neck cancer.
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- Carcinogenesis, 2022, v. 43, n. 5, p. 430, doi. 10.1093/carcin/bgac021
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- Article
DNA methylation‐derived systemic inflammation indices and their association with oropharyngeal cancer risk and survival.
- Published in:
- Head & Neck, 2022, v. 44, n. 4, p. 904, doi. 10.1002/hed.26981
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- Article
Interactions of Age and Blood Immune Factors and Noninvasive Prediction of Glioma Survival.
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- 2022
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- Publication type:
- journal article
A core of differentially methylated CpG loci in gMDSCs isolated from neonatal and adult sources.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01247-1
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- Publication type:
- Article
Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27864-7
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- Publication type:
- Article
Immune profiles and DNA methylation alterations related with non-muscle-invasive bladder cancer outcomes.
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- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01234-6
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- Publication type:
- Article
DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker.
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- Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01156-9
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- Article
MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks.
- Published in:
- NPJ Systems Biology & Applications, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41540-021-00193-7
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- Article
Weight management intervention identifies association of decreased DNA methylation age with improved functional age measures in older adults with obesity.
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- Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01031-7
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- Article
A phase 1 study of combined guadecitabine and cisplatin in platinum refractory germ cell cancer.
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- Cancer Medicine, 2021, v. 10, n. 1, p. 156, doi. 10.1002/cam4.3583
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- Article
Altered immune phenotype and DNA methylation in panic disorder.
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- Clinical Epigenetics, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13148-020-00972-9
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- Article
MethylNet: an automated and modular deep learning approach for DNA methylation analysis.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3443-8
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- Article
Prediagnostic breast milk DNA methylation alterations in women who develop breast cancer.
- Published in:
- Human Molecular Genetics, 2020, v. 29, n. 4, p. 662, doi. 10.1093/hmg/ddz301
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- Article
Microbial Communities in Human Milk Relate to Measures of Maternal Weight.
- Published in:
- Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02886
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- Publication type:
- Article
PyMethylProcess—convenient high-throughput preprocessing workflow for DNA methylation data.
- Published in:
- Bioinformatics, 2019, v. 35, n. 24, p. 5379, doi. 10.1093/bioinformatics/btz594
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- Article
DNA methylation aging clocks: challenges and recommendations.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1824-y
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- Article
Your DNA May Appear Older Than You Think.
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- 2019
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- Publication type:
- editorial
Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data.
- Published in:
- Clinical Epigenetics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13148-019-0717-y
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- Publication type:
- Article
Absence of an embryonic stem cell DNA methylation signature in human cancer.
- Published in:
- 2019
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- Publication type:
- journal article
Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier.
- Published in:
- 2019
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- Publication type:
- journal article
Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with lung macrophages in cystic fibrosis.
- Published in:
- Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0580-2
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- Publication type:
- Article
NLRP3 expression in mesencephalic neurons and characterization of a rare NLRP3 polymorphism associated with decreased risk of Parkinson's disease.
- Published in:
- NPJ Parkinson's Disease, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41531-018-0061-5
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- Publication type:
- Article
Pan-Cancer Analysis Reveals Differential Susceptibility of Bidirectional Gene Promoters to DNA Methylation, Somatic Mutations, and Copy Number Alterations.
- Published in:
- International Journal of Molecular Sciences, 2018, v. 19, n. 8, p. 2296, doi. 10.3390/ijms19082296
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- Article
Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner.
- Published in:
- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0490-8
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- Publication type:
- Article
An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray.
- Published in:
- Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1448-7
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- Article
Cell-type deconvolution from DNA methylation: a review of recent applications.
- Published in:
- Human Molecular Genetics, 2017, v. 26, p. R216, doi. 10.1093/hmg/ddx275
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- Publication type:
- Article