Works by Chowdhury, Ratul

Results: 22

Reinforcement learning‐guided control strategies for CAR T‐cell activation and expansion.

Published in:

Biotechnology & Bioengineering, 2024, v. 121, n. 9, p. 2868, doi. 10.1002/bit.28753

By:

Ferdous, Sakib;
Shihab, Ibne Farabi;
Chowdhury, Ratul;
Reuel, Nigel F.

Publication type:

Article

Computational approaches for enteric methane mitigation research: from fermi calculations to artificial intelligence paradigms.

Published in:

Animal Frontiers, 2024, v. 14, n. 6, p. 33, doi. 10.1093/af/vfae025

By:

Chowdhury, Ratul;
Frazier, Anthony Nathan;
Koziel, Jacek A;
Thompson, Logan;
Beck, Matthew R

Publication type:

Article

Dissecting metabolic landscape of alveolar macrophage.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-81253-w

By:

Malla, Sunayana;
Sajeevan, Karuna Anna;
Acharya, Bibek;
Chowdhury, Ratul;
Saha, Rajib

Publication type:

Article

Viral escape-inspired framework for structure-guided dual bait protein biosensor design.

Published in:

PLoS Computational Biology, 2025, v. 20, n. 4, p. 1, doi. 10.1371/journal.pcbi.1012964

By:

Teoh, Yee Chuen;
Noor, Mohammed Sakib;
Aghakhani, Sina;
Girton, Jack;
Hu, Guiping;
Chowdhury, Ratul

Publication type:

Article

Autophagy-related protein Atg11 is essential for microtubule-mediated chromosome segregation.

Published in:

PLoS Biology, 2025, v. 23, n. 4, p. 1, doi. 10.1371/journal.pbio.3003069

By:

Reza, Md. Hashim;
Aggarwal, Rashi;
Verma, Jigyasa;
Podh, Nitesh Kumar;
Chowdhury, Ratul;
Mehta, Gunjan;
Manjithaya, Ravi;
Sanyal, Kaustuv

Publication type:

Article

A single amino acid change led to structural and functional differentiation of PvHd1 to control flowering in switchgrass.

Published in:

Journal of Experimental Botany, 2023, v. 74, n. 18, p. 5532, doi. 10.1093/jxb/erad255

By:

Choi, Soyeon;
Prabhakar, Pradeep K;
Chowdhury, Ratul;
Pendergast, Thomas H;
Urbanowicz, Breeanna R;
Maranas, Costas;
Devos, Katrien M

Publication type:

Article

Nasogastric Tube Insertion in Anaesthetised, Intubated Paediatric Patients: A Comparison between Conventional Blind Method and ‘Throat Pack In-situ’ Technique.

Published in:

Journal of Clinical & Diagnostic Research, 2019, v. 13, n. 12, p. 1, doi. 10.7860/JCDR/2019/42938.13346

By:

CHOWDHURY, RATUL;
MANDAL, MOHANCHANDRA;
KHANRA, MOUSHUMI;
MUKHERJEE, ABHIJIT

Publication type:

Article

From directed evolution to computational enzyme engineering—A review.

Published in:

AIChE Journal, 2020, v. 66, n. 3, p. N.PAG, doi. 10.1002/aic.16847

By:

Chowdhury, Ratul;
Maranas, Costas D.

Publication type:

Article

SRF2T-ID: an implementation of ensemble learning-based IDS with wireless of things secure communication for smart residency environment.

Published in:

Neural Computing & Applications, 2025, v. 37, n. 18, p. 12525, doi. 10.1007/s00521-025-11154-0

By:

Barman, Prokash;
Chowdhury, Ratul;
Chakraborty, Tamal;
Goswami, Arpan;
Ghosh, Sayak;
Saha, Banani

Publication type:

Article

De novo design and Rosetta‐based assessment of high‐affinity antibody variable regions (Fv) against the SARS‐CoV‐2 spike receptor binding domain (RBD).

Published in:

Proteins, 2023, v. 91, n. 2, p. 196, doi. 10.1002/prot.26422

By:

Boorla, Veda Sheersh;
Chowdhury, Ratul;
Ramasubramanian, Ranjani;
Ameglio, Brandon;
Frick, Rahel;
Gray, Jeffrey J.;
Maranas, Costas D.

Publication type:

Article

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00943-6

By:

Patiño-Galindo, Juan Ángel;
Filip, Ioan;
Chowdhury, Ratul;
Maranas, Costas D.;
Sorger, Peter K.;
AlQuraishi, Mohammed;
Rabadan, Raul

Publication type:

Article

SE<sup>2</sup>CURA - design and implementation of a robust ensemble learning based 2-tier intrusion detection system for real time traffic.

Published in:

Multimedia Tools & Applications, 2024, v. 83, n. 13, p. 38567, doi. 10.1007/s11042-023-16876-8

By:

Chowdhury, Ratul;
Chakraborty, Tamal;
Purkait, Shankhadeep;
Saha, Banani

Publication type:

Article

An optimal feature based network intrusion detection system using bagging ensemble method for real-time traffic analysis.

Published in:

Multimedia Tools & Applications, 2022, v. 81, n. 28, p. 41225, doi. 10.1007/s11042-022-12330-3

By:

Chowdhury, Ratul;
Sen, Shibaprasad;
Roy, Arindam;
Saha, Banani

Publication type:

Article

OptMAVEn-2.0: De novo Design of Variable Antibody Regions against Targeted Antigen Epitopes.

Published in:

Antibodies (2073-4468), 2018, v. 7, n. 3, p. 23, doi. 10.3390/antib7030023

By:

Chowdhury, Ratul;
Allan, Matthew F.;
Maranas, Costas D.

Publication type:

Article

PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06097-1

By:

Chowdhury, Ratul;
Ren, Tingwei;
Shankla, Manish;
Decker, Karl;
Grisewood, Matthew;
Prabhakar, Jeevan;
Baker, Carol;
Golbeck, John H.;
Aksimentiev, Aleksei;
Kumar, Manish;
Maranas, Costas D.

Publication type:

Article

Facile Affinity Maturation of Antibody Variable Domains Using Natural Diversity Mutagenesis.

Published in:

Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00986

By:

Tiller, Kathryn E.;
Chowdhury, Ratul;
Tong Li;
Ludwig, Seth D.;
Sen, Sabyasachi;
Maranas, Costas D.;
Tessier, Peter M.

Publication type:

Article

Effective pathogen removal in sustainable natural fiber Moringa filters.

Published in:

NPJ Clean Water, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s41545-022-00170-5

By:

Samineni, Laxmicharan;
De Respino, Sophie;
Tu, Yu-Ming;
Chowdhury, Ratul;
Mohanty, Rashmi Prava;
Oh, Hyeonji;
Geitner, Michael;
Alberg, Claire Hartwig;
Roman-White, Abigail;
McKinzie, Sarine;
Lemus, Camila;
Massey, Joy;
Ghosh, Debadyuti;
Truskett, Thomas M.;
Velegol, Stephanie;
Kumar, Manish

Publication type:

Article

Engineering sensitivity and specificity of AraC-based biosensors responsive to triacetic acid lactone and orsellinic acid.

Published in:

PEDS: Protein Engineering, Design & Selection, 2020, v. 33, p. 1, doi. 10.1093/protein/gzaa027

By:

Wang, Zhiqing;
Doshi, Aarti;
Chowdhury, Ratul;
Wang, Yixi;
Maranas, Costas D;
Cirino, Patrick C

Publication type:

Article

Interacting Generalized Cosmic Chaplygin Gas in Loop Quantum Cosmology: A Singularity Free Universe.

Published in:

International Journal of Theoretical Physics, 2013, v. 52, n. 2, p. 489, doi. 10.1007/s10773-012-1353-x

By:

Chowdhury, Ratul;
Rudra, Prabir

Publication type:

Article

Influence of Gauss-Bonnet Coupling Parameter on the Thermodynamic Properties of Einstein-Gauss-Bonnet and Einstein-Yang-Mills-Gauss-Bonnet Black Holes.

Published in:

International Journal of Theoretical Physics, 2011, v. 50, n. 5, p. 1628, doi. 10.1007/s10773-011-0672-7

By:

Chowdhury, Ratul;
Biswas, Ritabrata;
Mazumder, Nairwita;
Chakraborty, Subenoy

Publication type:

Article

Publisher Correction: Single-sequence protein structure prediction using a language model and deep learning.

Published in:

2022

By:

Chowdhury, Ratul;
Bouatta, Nazim;
Biswas, Surojit;
Floristean, Christina;
Kharkar, Anant;
Roy, Koushik;
Rochereau, Charlotte;
Ahdritz, Gustaf;
Zhang, Joanna;
Church, George M.;
Sorger, Peter K.;
AlQuraishi, Mohammed

Publication type:

Correction Notice

Single-sequence protein structure prediction using a language model and deep learning.

Published in:

Nature Biotechnology, 2022, v. 40, n. 11, p. 1617, doi. 10.1038/s41587-022-01432-w

By:

Chowdhury, Ratul;
Bouatta, Nazim;
Biswas, Surojit;
Floristean, Christina;
Kharkar, Anant;
Roy, Koushik;
Rochereau, Charlotte;
Ahdritz, Gustaf;
Zhang, Joanna;
Church, George M.;
Sorger, Peter K.;
AlQuraishi, Mohammed

Publication type:

Article