Works by Choo, Siew Woh

Results: 43

Successful captive breeding of a Malayan pangolin population to the third filial generation.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02760-4

By:

Yan, Dingyu;
Zeng, Xiangyan;
Jia, Miaomiao;
Guo, Xiaobing;
Deng, Siwei;
Tao, Li;
Huang, Xiaolu;
Li, Baocai;
Huang, Chang;
Que, Tengcheng;
Li, Kaixiang;
Liang, Wenhui;
Zhao, Yao;
Liang, Xingxing;
Zhong, Yating;
Platto, Sara;
Choo, Siew Woh

Publication type:

Article

Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline.

Published in:

PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0214663

By:

Wee, Wei Yee;
Dutta, Avirup;
Jayaraj, Jayasyaliny;
Choo, Siew Woh

Publication type:

Article

A phylogenomic approach to bacterial subspecies classification: proof of concept in Mycobacterium abscessus.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-879

By:

Joon Liang Tan;
Tsung Fei Khang;
Yun Fong Ngeow;
Siew Woh Choo

Publication type:

Article

Roles of cofactors and chromatin accessibility in Hox protein target specificity.

Published in:

Epigenetics & Chromatin, 2016, v. 9, p. 1, doi. 10.1186/s13072-015-0049-x

By:

Ching Yew Beh;
El-Sharnouby, Sherif;
Chatzipli, Aikaterini;
Russell, Steven;
Siew Woh Choo;
White, Robert

Publication type:

Article

CoryneBase: Corynebacterium Genomic Resources and Analysis Tools at Your Fingertips.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086318

By:

Heydari, Hamed;
Siow, Cheuk Chuen;
Tan, Mui Fern;
Jakubovics, Nick S.;
Wee, Wei Yee;
Mutha, Naresh V. R.;
Wong, Guat Jah;
Ang, Mia Yang;
Yazdi, Amir Hessam;
Choo, Siew Woh

Publication type:

Article

MabsBase: A Mycobacterium abscessus Genome and Annotation Database.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0062443

By:

Heydari, Hamed;
Wee, Wei Yee;
Lokanathan, Naline;
Hari, Ranjeev;
Mohamed Yusoff, Aini;
Beh, Ching Yew;
Yazdi, Amir Hessam;
Wong, Guat Jah;
Ngeow, Yun Fong;
Choo, Siew Woh

Publication type:

Article

Genome-Wide Analysis of the Binding of the Hox Protein Ultrabithorax and the Hox Cofactor Homothorax in Drosophila.

Published in:

PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0014778

By:

Siew Woh Choo;
White, Robert;
Russell, Steven

Publication type:

Article

An RNA-Seq analysis of coronavirus in the skin of the Pangolin.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-51261-x

By:

Deng, Siwei;
Tian, Xuechen;
Belshaw, Robert;
Zhou, Jinfeng;
Zhang, Siyuan;
Yang, Yixin;
Huang, Chang;
Chen, Weikang;
Qiu, Hailu;
Choo, Siew Woh

Publication type:

Article

The anti-cancer effect and mechanism of animal scale-derived extract on malignant melanoma cells.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39742-x

By:

Song, Lanni;
Li, Chen;
Yu, Jia;
Yang, Yixin;
Tian, Xuechen;
Choo, Siew Woh

Publication type:

Article

Genome characterisation and comparative analysis of Schaalia dentiphila sp. nov. and its subspecies, S. dentiphila subsp. denticola subsp. nov., from the human oral cavity.

Published in:

BMC Microbiology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12866-024-03346-w

By:

Tian, Xuechen;
Teo, Wee Fei Aaron;
Yang, Yixin;
Dong, Linyinxue;
Wong, Aloysius;
Chen, Li;
Ahmed, Halah;
Choo, Siew Woh;
Jakubovics, Nicholas S.;
Tan, Geok Yuan Annie

Publication type:

Article

Pangolin scales as adaptations for innate immunity against pathogens.

Published in:

BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-02034-5

By:

Tian, Xuechen;
Chen, Li;
Zhou, Jinfeng;
Wang, Enbo;
Wang, Mu;
Jakubovics, Nicholas;
Li, Jing;
Song, Kunping;
Lau, King Tong;
Koepfli, Klaus-Peter;
Zhang, Siyuan;
Tan, Geok Yuan Annie;
Yang, Yixin;
Choo, Siew Woh

Publication type:

Article

Pangolin scales as adaptations for innate immunity against pathogens.

Published in:

BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-02034-5

By:

Tian, Xuechen;
Chen, Li;
Zhou, Jinfeng;
Wang, Enbo;
Wang, Mu;
Jakubovics, Nicholas;
Li, Jing;
Song, Kunping;
Lau, King Tong;
Koepfli, Klaus-Peter;
Zhang, Siyuan;
Tan, Geok Yuan Annie;
Yang, Yixin;
Choo, Siew Woh

Publication type:

Article

YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-014-0422-y

By:

Shi Yang Tan;
Avirup Dutta;
Jakubovics, Nicholas S.;
Mia Yang Ang;
Cheuk Chuen Siow;
Mutha, Naresh V. R.;
Heydari, Hamed;
Wei Yee Wee;
Guat Jah Wong;
Siew Woh Choo

Publication type:

Article

YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 102, doi. 10.1186/s12859-014-0422-y

By:

Shi Yang Tan;
Dutta, Avirup;
Jakubovics, Nick S.;
Mia Yang Ang;
Chuek Chuen Siow;
Mutha, Naresh V. R.;
Heydari, Hamed;
Guat Jah Wong;
Siew Woh Choo

Publication type:

Article

Exome Sequencing Identifies Potentially Druggable Mutations in Nasopharyngeal Carcinoma.

Published in:

Scientific Reports, 2017, p. 42980, doi. 10.1038/srep42980

By:

Chow, Yock Ping;
Tan, Lu Ping;
Chai, San Jiun;
Abdul Aziz, Norazlin;
Choo, Siew Woh;
Lim, Paul Vey Hong;
Pathmanathan, Rajadurai;
Mohd Kornain, Noor Kaslina;
Lum, Chee Lun;
Pua, Kin Choo;
Yap, Yoke Yeow;
Tan, Tee Yong;
Teo, Soo Hwang;
Khoo, Alan Soo-Beng;
Patel, Vyomesh

Publication type:

Article

Evolutionary study of Yersinia genomes deciphers emergence of human pathogenic species.

Published in:

Scientific Reports, 2016, p. 36116, doi. 10.1038/srep36116

By:

Tan, Shi Yang;
Tan, Irene Kit Ping;
Tan, Mui Fern;
Dutta, Avirup;
Choo, Siew Woh

Publication type:

Article

De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin.

Published in:

Scientific Reports, 2016, p. 28199, doi. 10.1038/srep28199

By:

Mohamed Yusoff, Aini;
Tan, Tze King;
Hari, Ranjeev;
Koepfli, Klaus-Peter;
Wee, Wei Yee;
Antunes, Agostinho;
Sitam, Frankie Thomas;
Rovie-Ryan, Jeffrine Japning;
Karuppannan, Kayal Vizi;
Wong, Guat Jah;
Lipovich, Leonard;
Warren, Wesley C.;
O'Brien, Stephen J.;
Choo, Siew Woh

Publication type:

Article

MycoCAP - Mycobacterium Comparative Analysis Platform.

Published in:

Scientific Reports, 2015, p. 18227, doi. 10.1038/srep18227

By:

Choo, Siew Woh;
Ang, Mia Yang;
Dutta, Avirup;
Tan, Shi Yang;
Siow, Cheuk Chuen;
Heydari, Hamed;
Mutha, Naresh V. R.;
Wee, Wei Yee;
Wong, Guat Jah

Publication type:

Article

Comparative genomic analysis of Mycobacterium iranicum UM_TJL against representative mycobacterial species suggests its environmental origin.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep07169

By:

Joon Liang Tan;
Yun Fong Ngeow;
Wei Yee Wee;
Guat Jah Wong;
Hien Fuh Ng;
Siew Woh Choo

Publication type:

Article

Comparative genome analyses of mycobacteria give better insights into their evolution.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0172831

By:

Wee, Wei Yee;
Dutta, Avirup;
Choo, Siew Woh

Publication type:

Article

Regions of very low H3K27me3 partition the Drosophila genome into topological domains.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0172725

By:

El-Sharnouby, Sherif;
Fischer, Bettina;
Magbanua, Jose Paolo;
Umans, Benjamin;
Flower, Rosalyn;
Choo, Siew Woh;
Russell, Steven;
White, Robert

Publication type:

Article

Whole-transcriptome analysis reveals mechanisms underlying antibacterial activity and biofilm inhibition by a malic acid combination (MAC) in Pseudomonas aeruginosa.

Published in:

PeerJ, 2023, p. 1, doi. 10.7717/peerj.16476

By:

Kunping Song;
Li Chen;
Nanhua Suo;
Xinyi Kong;
Juexi Li;
Tianyu Wang;
Lanni Song;
Mengwei Cheng;
Xindian Guo;
Zhenghe Huang;
Zichen Huang;
Yixin Yang;
Xuechen Tian;
Siew Woh Choo

Publication type:

Article

Genome sequence analysis of Malayan pangolin (Manis javanica) forensic samples reveals the presence of Paraburkholderia fungorum sequences.

Published in:

PeerJ, 2023, p. 1, doi. 10.7717/peerj.16002

By:

Ka Yun Tan;
Siwei Deng;
Tze King Tan;
Hari, Ranjeev;
Sitam, Frankie Thomas;
Othman, Rofina Yasmin;
Kum Thong Wong;
Mohd Mohidin, Taznim Begam;
Siew Woh Choo

Publication type:

Article

Comprehensive genome analysis of a pangolin-associated Paraburkholderia fungorum provides new insights into its secretion systems and virulence.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.9733

By:

Ka Yun Tan;
Dutta, Avirup;
Tze King Tan;
Hari, Ranjeev;
Othman, Rofina Y.;
Siew Woh Choo

Publication type:

Article

PGD: a pangolin genome hub for the research community.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw063

By:

Tze King Tan;
Ka Yun Tan;
Hari, Ranjeev;
Yusoff, Aini Mohamed;
Guat Jah Wong;
Siow, Cheuk Chuen;
Mutha, Naresh V. R.;
Rayko, Mike;
Komissarov, Aleksey;
Dobrynin, Pavel;
Krasheninnikova, Ksenia;
Tamazian, Gaik;
Paterson, Ian C.;
Warren, Wesley C.;
Johnson, Warren E.;
O'Brien, Stephen J.;
Siew Woh Choo

Publication type:

Article

FusoBase: an online Fusobacterium comparative genomic analysis platform.

Published in:

Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau082

By:

Mia Yang Ang;
Heydari, Hamed;
Jakubovics, Nick S.;
Mahmud, Mahafizul Imran;
Dutta, Avirup;
Wei Yee Wee;
Guat Jah Wong;
Mutha, Naresh V. R.;
Shi Yang Tan;
Siew Woh Choo

Publication type:

Article

StaphyloBase: a specialized genomic resource for the staphylococcal research community.

Published in:

Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau010

By:

Heydari, Hamed;
Mutha, Naresh V. R.;
Mahmud, Mahafizul Imran;
Cheuk Chuen Siow;
Wei Yee Wee;
Guat Jah Wong;
Yazdi, Amir Hessam;
Mia Yang Ang;
Siew Woh Choo

Publication type:

Article

Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives.

Published in:

Gut Pathogens, 2013, v. 5, n. 1, p. 1, doi. 10.1186/1757-4749-5-25

By:

Khosravi, Yalda;
Rehvathy, Vellaya;
Wei Yee Wee;
Wang, Susana;
Baybayan, Primo;
Singh, Siddarth;
Ashby, Meredith;
Junxian Ong;
Amoyo, Arlaine Anne;
Shih Wee Seow;
Siew Woh Choo;
Perkins, Tim;
Eng Guan Chua;
Tay, Alfred;
Marshall, Barry James;
Mun Fai Loke;
Khean Lee Goh;
Pettersson, Sven;
Vadivelu, Jamuna

Publication type:

Article

Development of ListeriaBase and comparative analysis of Listeria monocytogenes.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1959-5

By:

Mui Fern Tan;
Cheuk Chuen Siow;
Dutta, Avirup;
Mutha, Naresh V. R.;
Wei Yee Wee;
Heydari, Hamed;
Shi Yang Tan;
Mia Yang Ang;
Guat Jah Wong;
Siew Woh Choo

Publication type:

Article

HelicoBase: a Helicobacter genomic resource and analysis platform

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 600, doi. 10.1186/1471-2164-15-600

By:

Siew Woh Choo;
Mia Yang Ang;
Hanieh Fouladi;
Shi Yang Tan;
Cheuk Chuen Siow;
Mutha, Naresh VR;
Heydari, Hamed;
Wei Yee Wee;
Vadivelu, Jamuna;
Mun Fai Loke;
Rehvathy, Vellaya;
Guat Jah Wong

Publication type:

Article

FGF4, A New Potential Regulator in Gestational Diabetes Mellitus.

Published in:

Frontiers in Pharmacology, 2022, v. 13, p. 1, doi. 10.3389/fphar.2022.827617

By:

Fan, Miaojuan;
Pan, Tongtong;
Jin, Wei;
Sun, Jian;
Zhang, Shujun;
Du, Yali;
Chen, Xinwei;
Chen, Qiong;
Xu, Wenxin;
Choo, Siew Woh;
Zhu, Guanghui;
Chen, Yongping;
Zhou, Jie

Publication type:

Article

Genome characterization and taxonomy of Actinomyces acetigenes sp. nov., and Actinomyces stomatis sp. nov., previously isolated from the human oral cavity.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09831-2

By:

Tian, Xuechen;
Teo, Wee Fei Aaron;
Wee, Wei Yee;
Yang, Yixin;
Ahmed, Halah;
Jakubovics, Nicholas S.;
Choo, Siew Woh;
Tan, Geok Yuan Annie

Publication type:

Article

Comparative Genome Analysis of Fusobacterium nucleatum.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 9, p. 2928, doi. 10.1093/gbe/evw199

By:

Mia Yang Ang;
Dutta, Avirup;
Wei Yee Wee;
Dymock, David;
Paterson, Ian C.;
Siew Woh Choo

Publication type:

Article

StreptoBase: An Oral Streptococcus mitis Group Genomic Resource and Analysis Platform.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0151908

By:

Zheng, Wenning;
Tan, Tze King;
Paterson, Ian C.;
Mutha, Naresh V. R.;
Siow, Cheuk Chuen;
Tan, Shi Yang;
Old, Lesley A.;
Jakubovics, Nicholas S.;
Choo, Siew Woh

Publication type:

Article

Comparative Genomic Analysis Reveals a Possible Novel Non-Tuberculous Mycobacterium Species with High Pathogenic Potential.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0150413

By:

Choo, Siew Woh;
Dutta, Avirup;
Wong, Guat Jah;
Wee, Wei Yee;
Ang, Mia Yang;
Siow, Cheuk Chuen

Publication type:

Article

Whole-Genome Sequencing and Comparative Analysis of Mycobacterium brisbanense Reveals a Possible Soil Origin and Capability in Fertiliser Synthesis.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0152682

By:

Wee, Wei Yee;
Tan, Tze King;
Jakubovics, Nicholas S.;
Choo, Siew Woh

Publication type:

Article

VibrioBase: a model for next-generation genome and annotation database development.

Published in:

2014

By:

Choo, Siew Woh;
Heydari, Hamed;
Tan, Tze King;
Siow, Cheuk Chuen;
Beh, Ching Yew;
Wee, Wei Yee;
Mutha, Naresh V R;
Wong, Guat Jah;
Ang, Mia Yang;
Yazdi, Amir Hessam

Publication type:

journal article

Characterisation of Drosophila Ubx CPTI000601 and hth CPTI000378 protein trap lines.

Published in:

2014

By:

Choo, Siew Woh;
Beh, Ching Yew;
Russell, Steven;
White, Robert

Publication type:

journal article

VibrioBase: A Model for Next-Generation Genome and Annotation Database Development.

Published in:

Scientific World Journal, 2014, p. 1, doi. 10.1155/2014/569324

By:

Siew Woh Choo;
Hamed Heydari;
Tze King Tan;
Cheuk Chuen Siow;
Ching Yew Beh;
Wei Yee Wee;
Mutha, Naresh V. R.;
Guat Jah Wong;
Mia Yang Ang;
Yazdi, Amir Hessam

Publication type:

Article

Characterisation of Drosophila UbxCPTI000601 and hthCPTI000378 Protein Trap Lines.

Published in:

Scientific World Journal, 2014, p. 1, doi. 10.1155/2014/191535

By:

Siew Woh Choo;
Ching Yew Beh;
Russell, Steven;
White, Robert

Publication type:

Article

Conservation genomics reveals possible illegal trade routes and admixture across pangolin lineages in Southeast Asia.

Published in:

Conservation Genetics, 2018, v. 19, n. 5, p. 1083, doi. 10.1007/s10592-018-1080-9

By:

Nash, Helen C.;
Wirdateti;
Low, Gabriel W.;
Choo, Siew Woh;
Chong, Ju Lian;
Semiadi, Gono;
Hari, Ranjeev;
Sulaiman, Muhammad Hafiz;
Turvey, Samuel T.;
Evans, Theodore A.;
Rheindt, Frank E.

Publication type:

Article

Helping to save pangolins from extinction.

Published in:

Conservation Letters, 2022, v. 15, n. 3, p. 1, doi. 10.1111/conl.12871

By:

Choo, Siew Woh;
Platto, Sara;
Challender, Daniel W.S.

Publication type:

Article

Are pangolins scapegoats of the COVID‐19 outbreak‐CoV transmission and pathology evidence?

Published in:

Conservation Letters, 2020, v. 13, n. 6, p. 1, doi. 10.1111/conl.12754

By:

Choo, Siew Woh;
Zhou, Jinfeng;
Tian, Xuechen;
Zhang, Siyuan;
Qiang, Shen;
O'Brien, Stephen J.;
Tan, Ka Yun;
Platto, Sara;
Koepfli, Klaus‐Peter;
Antunes, Agostinho;
Sitam, Frankie Thomas

Publication type:

Article