Works by Chiu, Readman

Results: 19

Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02447-3

By:

Chiu, Readman;
Rajan-Babu, Indhu-Shree;
Friedman, Jan M.;
Birol, Inanc

Publication type:

Article

TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.

Published in:

BMC Medical Genomics, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s12920-018-0402-6

By:

Chiu, Readman;
Nip, Ka Ming;
Chu, Justin;
Birol, Inanc

Publication type:

Article

Konnector v2.0: pseudo-long reads from paired-end sequencing data.

Published in:

BMC Medical Genomics, 2015, v. 8, p. 1, doi. 10.1186/1755-8794-8-S3-S1

By:

Vandervalk, Benjamin P.;
Chen Yang;
Zhuyi Xue;
Raghavan, Karthika;
Chu, Justin;
Mohamadi, Hamid;
Jackman, Shaun D.;
Chiu, Readman;
Warren, René L.;
Birol, Inanç

Publication type:

Article

Automated ordering of fingerprinted clones.

Published in:

Bioinformatics, 2004, v. 20, n. 8, p. 1264, doi. 10.1093/bioinformatics/bth079

By:

Stephane Flibotte;
Readman Chiu;
Chris Fjell;
Martin Krzywinski;
Jacqueline E. Schein;
Heesun Shin;
Marco A. Marra

Publication type:

Article

Linked-read sequencing for detecting short tandem repeat expansions.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-13024-4

By:

Chiu, Readman;
Rajan-Babu, Indhu-Shree;
Birol, Inanc;
Friedman, Jan M.

Publication type:

Article

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38553-y

By:

Nip, Ka Ming;
Hafezqorani, Saber;
Gagalova, Kristina K.;
Chiu, Readman;
Yang, Chen;
Warren, René L.;
Birol, Inanc

Publication type:

Article

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38553-y

By:

Nip, Ka Ming;
Hafezqorani, Saber;
Gagalova, Kristina K.;
Chiu, Readman;
Yang, Chen;
Warren, René L.;
Birol, Inanc

Publication type:

Article

Correction to: Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions.

Published in:

2021

By:

Rajan-Babu, Indhu-Shree;
Peng, Junran J.;
Chiu, Readman;
IMAGINE Study;
Birch, Patricia;
Couse, Madeline;
Guimond, Colleen;
Lehman, Anna;
Mwenifumbo, Jill;
van Karnebeek, Clara;
Friedman, Jan;
CAUSES Study;
Adam, Shelin;
Du Souich, Christele;
Elliott, Alison;
Nelson, Tanya;
Rajan-Babu;
Li, Chenkai;
Mohajeri, Arezoo;
Dolzhenko, Egor

Publication type:

Correction Notice

Improved white spruce ( Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.

Published in:

Plant Journal, 2015, v. 83, n. 2, p. 189, doi. 10.1111/tpj.12886

By:

Warren, René L.;
Keeling, Christopher I.;
Yuen, Macaire Man Saint;
Raymond, Anthony;
Taylor, Greg A.;
Vandervalk, Benjamin P.;
Mohamadi, Hamid;
Paulino, Daniel;
Chiu, Readman;
Jackman, Shaun D.;
Robertson, Gordon;
Yang, Chen;
Boyle, Brian;
Hoffmann, Margarete;
Weigel, Detlef;
Nelson, David R.;
Ritland, Carol;
Isabel, Nathalie;
Jaquish, Barry;
Yanchuk, Alvin

Publication type:

Article

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Published in:

Plant Journal, 2007, v. 50, n. 6, p. 1063, doi. 10.1111/j.1365-313X.2007.03112.x

By:

Kelleher, Colin T.;
Chiu, Readman;
Shin, Heesun;
Bosdet, Ian E.;
Krzywinski, Martin I.;
Fjell, Chris D.;
Wilkin, Jennifer;
Yin, TongMing;
DiFazio, Stephen P.;
Ali, Johar;
Asano, Jennifer K.;
Chan, Susanna;
Cloutier, Alison;
Girn, Noreen;
Leach, Stephen;
Lee, Darlene;
Mathewson, Carrie A.;
Olson, Teika;
O'Connor, Katie;
Prabhu, Anna-Liisa

Publication type:

Article

A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22625-y

By:

Docking, T. Roderick;
Parker, Jeremy D. K.;
Jädersten, Martin;
Duns, Gerben;
Chang, Linda;
Jiang, Jihong;
Pilsworth, Jessica A.;
Swanson, Lucas A.;
Chan, Simon K.;
Chiu, Readman;
Nip, Ka Ming;
Mar, Samantha;
Mo, Angela;
Wang, Xuan;
Martinez-Høyer, Sergio;
Stubbins, Ryan J.;
Mungall, Karen L.;
Mungall, Andrew J.;
Moore, Richard A.;
Jones, Steven J. M.

Publication type:

Article

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-550

By:

Swanson, Lucas;
Robertson, Gordon;
Mungall, Karen L.;
Butterfield, Yaron S.;
Chiu, Readman;
Corbett, Richard D.;
Roderick Docking, T.;
Hogge, Donna;
Jackman, Shaun D.;
Moore, Richard A.;
Mungall, Andrew J.;
Nip, Ka Ming;
Parker, Jeremy D. K.;
Qian, Jenny Qing;
Raymond, Anthony;
Sung, Sandy;
Tam, Angela;
Thiessen, Nina;
Varhol, Richard;
Wang, Sherry

Publication type:

Article

De novo assembly and analysis of RNA-seq data.

Published in:

Nature Methods, 2010, v. 7, n. 11, p. 909, doi. 10.1038/nmeth.1517

By:

Robertson, Gordon;
Schein, Jacqueline;
Chiu, Readman;
Corbett, Richard;
Field, Matthew;
Jackman, Shaun D.;
Mungall, Karen;
Sam Lee;
Okada, Hisanaga Mark;
Qian, Jenny Q.;
Griffith, Malachi;
Raymond, Anthony;
Thiessen, Nina;
Cezard, Timothee;
Butterfield, Yaron S.;
Newsome, Richard;
Chan, Simon K.;
Rong She;
Varhol, Richard;
Kamoh, Baljit

Publication type:

Article

Purification and identification of tyrosine-phosphorylated proteins from B lymphocytes stimulated through the antigen receptor.

Published in:

Electrophoresis, 1994, v. 15, n. 1, p. 441, doi. 10.1002/elps.1150150161

By:

Gold, Michael R.;
Yungwirth, Tom;
Sutherland, Claire L.;
Ingham, Robert J.;
Vianzon, Daisy;
Chiu, Readman;
Van Oostveen, Inge;
Morrison, Hamish D.;
Aebersold, Ruedi

Publication type:

Article

A set of BAC clones spanning the human genome.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 12, p. 3651, doi. 10.1093/nar/gkh700

By:

Krzywinski, Martin;
Bosdet, Ian;
Smailus, Duane;
Chiu, Readman;
Mathewson, Carrie;
Wye, Natasja;
Barber, Sarah;
Brown-John, Mabel;
Chan, Susanna;
Chand, Steve;
Cloutier, Alison;
Girn, Noreen;
Lee, Darlene;
Masson, Amara;
Mayo, Michael;
Olson, Teika;
Pandoh, Pawan;
Prabhu, Anna-Liisa;
Schoenmakers, Eric;
Tsai, Miranda

Publication type:

Article

Fusion-Bloom: fusion detection in assembled transcriptomes.

Published in:

Bioinformatics, 2020, v. 36, n. 7, p. 2256, doi. 10.1093/bioinformatics/btz902

By:

Chiu, Readman;
Nip, Ka Ming;
Birol, Inanc

Publication type:

Article

Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.

Published in:

Journal of Pathology, 2012, v. 226, n. 1, p. 7, doi. 10.1002/path.2995

By:

Yip, Stephen;
Butterfield, Yaron S;
Morozova, Olena;
Chittaranjan, Suganthi;
Blough, Michael D;
An, Jianghong;
Birol, Inanc;
Chesnelong, Charles;
Chiu, Readman;
Chuah, Eric;
Corbett, Richard;
Docking, Rod;
Firme, Marlo;
Hirst, Martin;
Jackman, Shaun;
Karsan, Aly;
Li, Haiyan;
Louis, David N;
Maslova, Alexandra;
Moore, Richard

Publication type:

Article

Recurrent tumor-specific regulation of alternative polyadenylation of cancerrelated genes.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4903-7

By:

Zhuyi Xue;
Warren, René L.;
Gibb, Ewan A.;
MacMillan, Daniel;
Wong, Johnathan;
Chiu, Readman;
Austin Hammond, S.;
Chen Yang;
Nip, Ka Ming;
Ennis, Catherine A.;
Hahn, Abigail;
Reynolds, Sheila;
Birol, Inanc

Publication type:

Article

Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Published in:

Nature, 2011, v. 476, n. 7360, p. 298, doi. 10.1038/nature10351

By:

Morin, Ryan D.;
Mendez-Lago, Maria;
Mungall, Andrew J.;
Goya, Rodrigo;
Mungall, Karen L.;
Corbett, Richard D.;
Johnson, Nathalie A.;
Severson, Tesa M.;
Chiu, Readman;
Field, Matthew;
Jackman, Shaun;
Krzywinski, Martin;
Scott, David W.;
Trinh, Diane L.;
Tamura-Wells, Jessica;
Li, Sa;
Firme, Marlo R.;
Rogic, Sanja;
Griffith, Malachi;
Chan, Susanna

Publication type:

Article