Works by Chistoserdova, Ludmila

Results: 30

Recent progress and new challenges in metagenomics for biotechnology.

Published in:

Biotechnology Letters, 2010, v. 32, n. 10, p. 1351, doi. 10.1007/s10529-010-0306-9

By:

Chistoserdova, Ludmila

Publication type:

Article

Impacts of The Wetland Sedge Carex aquatilis on Microbial Community and Methane Metabolisms.

Published in:

Plant & Soil, 2022, v. 471, n. 1/2, p. 491, doi. 10.1007/s11104-021-05239-7

By:

Waldo, Nicholas B.;
Chistoserdova, Ludmila;
Hu, Dehong;
Gough, Heidi L.;
Neumann, Rebecca B.

Publication type:

Article

Electrochemically coupled CH4 and CO2 consumption driven by microbial processes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47445-8

By:

Zheng, Yue;
Wang, Huan;
Liu, Yan;
Liu, Peiyu;
Zhu, Baoli;
Zheng, Yanning;
Li, Jinhua;
Chistoserdova, Ludmila;
Ren, Zhiyong Jason;
Zhao, Feng

Publication type:

Article

Is metagenomics resolving identification of functions in microbial communities?

Published in:

Microbial Biotechnology, 2014, v. 7, n. 1, p. 1, doi. 10.1111/1751-7915.12077

By:

Chistoserdova, Ludmila

Publication type:

Article

Functional Metagenomics: Recent Advances and Future Challenges.

Published in:

Biotechnology & Genetic Engineering Reviews, 2009, v. 26, p. 335, doi. 10.5661/bger-26-335

By:

CHISTOSERDOVA, LUDMILA

Publication type:

Article

Methylotrophs in natural habitats: current insights through metagenomics.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 14, p. 5763, doi. 10.1007/s00253-015-6713-z

By:

Chistoserdova, Ludmila

Publication type:

Article

Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 3, p. 388, doi. 10.1038/ismej.2009.117

By:

Kalyuzhnaya, Marina G.;
Beck, David A. C.;
Suciu, Dominic;
Pozhitkov, Alexander;
Lidstrom, Mary E.;
Chistoserdova, Ludmila

Publication type:

Article

Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2008, v. 2, n. 7, p. 696, doi. 10.1038/ismej.2008.32

By:

Kalyuzhnaya, Marina G;
Lidstrom, Mary E;
Chistoserdova, Ludmila

Publication type:

Article

Wide Distribution of Genes for Tetrahydromethanopterin/ Methanofuran-Linked C1 Transfer Reactions Argues for Their Presence in the Common Ancestor of Bacteria and Archaea.

Published in:

2016

By:

Chistoserdova, Ludmila

Publication type:

Opinion

A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00946

By:

Zheng Yu;
Krause, Sascha M. B.;
Beck, David A. C.;
Chistoserdova, Ludmila

Publication type:

Article

Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00046

By:

Wegener, Gunter;
Krukenberg, Viola;
Ruff, S. Emil;
Kellermann, Matthias Y.;
Knittel, Katrin;
Chistoserdova, Ludmila;
Stams, Alfons

Publication type:

Article

Methylophilaceae link methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis.

Published in:

Environmental Microbiology Reports, 2009, v. 1, n. 5, p. 385, doi. 10.1111/j.1758-2229.2009.00046.x

By:

Kalyuhznaya, Marina G.;
Martens-Habbena, Willm;
Wang, Tiansong;
Hackett, Murray;
Stolyar, Sergey M.;
Stahl, David A.;
Lidstrom, Mary E.;
Chistoserdova, Ludmila

Publication type:

Article

Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01366

By:

Huang, Jing;
Yu, Zheng;
Chistoserdova, Ludmila

Publication type:

Article

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02392

By:

Zheng Yu;
Beck, David A. C.;
Chistoserdova, Ludmila

Publication type:

Article

New pieces to the lanthanide puzzle.

Published in:

Molecular Microbiology, 2019, v. 111, n. 5, p. 1127, doi. 10.1111/mmi.14210

By:

Chistoserdova, Ludmila

Publication type:

Article

Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00852

By:

Dziewit, Lukasz;
Czarnecki, Jakub;
Prochwicz, Emilia;
Wibberg, Daniel;
Schlüter, Andreas;
Pühler, Alfred;
Bartosik, Dariusz;
Chistoserdova, Ludmila;
Kappler, Ulrike

Publication type:

Article

Multiphyletic origins of methylotrophy in A lphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates.

Published in:

Environmental Microbiology, 2015, v. 17, n. 3, p. 547, doi. 10.1111/1462-2920.12736

By:

Beck, David A. C.;
McTaggart, Tami L.;
Setboonsarng, Usanisa;
Vorobev, Alexey;
Goodwin, Lynne;
Shapiro, Nicole;
Woyke, Tanja;
Kalyuzhnaya, Marina G.;
Lidstrom, Mary E.;
Chistoserdova, Ludmila

Publication type:

Article

Modularity of methylotrophy, revisited.

Published in:

Environmental Microbiology, 2011, v. 13, n. 10, p. 2603, doi. 10.1111/j.1462-2920.2011.02464.x

By:

Chistoserdova, Ludmila

Publication type:

Article

Fishing for biodiversity: novel methanopterin-linked C1 transfer genes deduced from the Sargasso Sea metagenome.

Published in:

Environmental Microbiology, 2005, v. 7, n. 12, p. 1909, doi. 10.1111/j.1462-2920.2005.00798.x

By:

Kalyuzhnaya, Marina G.;
Nercessian, Olivier;
Lapidus, Alla;
Chistoserdova, Ludmila

Publication type:

Article

Development and application of polymerase chain reaction primers based on fhcD for environmental detection of methanopterin-linked C1-metabolism in bacteria.

Published in:

Environmental Microbiology, 2005, v. 7, n. 8, p. 1269, doi. 10.1111/j.1462-2920.2004.00831.x

By:

Kalyuzhnaya, Marina G.;
Nercessian, Olivier;
Lidstrom, Mary E.;
Chistoserdova, Ludmila

Publication type:

Article

The Enigmatic Planctomycetes May Hold a Key to the Origins of Methanogenesis and Methylotrophy.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 7, p. 1234, doi. 10.1093/molbev/msh113

By:

Chistoserdova, Ludmila;
Jenkins, Cheryl;
Kalyuzhnaya, Marina G.;
Marx, Christopher J.;
Lapidus, Alla;
Vorholt, Julia A.;
Staley, James T.;
Lidstrom, Mazy E.

Publication type:

Article

The PTS Components in Klebsiella pneumoniae Affect Bacterial Capsular Polysaccharide Production and Macrophage Phagocytosis Resistance.

Published in:

Microorganisms, 2021, v. 9, n. 2, p. 335, doi. 10.3390/microorganisms9020335

By:

Panjaitan, Novaria Sari Dewi;
Horng, Yu-Tze;
Chien, Chih-Ching;
Yang, Hung-Chi;
You, Ren-In;
Soo, Po-Chi;
Chistoserdova, Ludmila

Publication type:

Article

Metagenomic Insight into Environmentally Challenged Methane-Fed Microbial Communities.

Published in:

Microorganisms, 2020, v. 8, n. 10, p. 1614, doi. 10.3390/microorganisms8101614

By:

Zheng, Yue;
Wang, Huan;
Yu, Zheng;
Haroon, Fauzi;
Hernández, Maria E.;
Chistoserdova, Ludmila

Publication type:

Article

The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102458

By:

Beck, David A. C.;
McTaggart, Tami L.;
Setboonsarng, Usanisa;
Vorobev, Alexey;
Kalyuzhnaya, Marina G.;
Ivanova, Natalia;
Goodwin, Lynne;
Woyke, Tanja;
Lidstrom, Mary E.;
Chistoserdova, Ludmila

Publication type:

Article

Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources.

Published in:

PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005584

By:

Vuilleumier, Stéphane;
Chistoserdova, Ludmila;
Ming-Chun Lee;
Bringel, Françoise;
Lajus, Aurélie;
Yang Zhou;
Gourion, Benjamin;
Barbe, Valérie;
Chang, Jean;
Cruveiller, Stéphane;
Dossat, Carole;
Gillett, Will;
Gruffaz, Christelle;
Haugen, Eric;
Hourcade, Edith;
Levy, Ruth;
Mangenot, Sophie;
Muller, Emilie;
Nadalig, Thierry;
Pagni, Marco

Publication type:

Article

High-resolution metagenomics targets specific functional types in complex microbial communities.

Published in:

Nature Biotechnology, 2008, v. 26, n. 9, p. 1029, doi. 10.1038/nbt.1488

By:

Kalyuzhnaya, Marina G;
Lapidus, Alla;
Ivanova, Natalia;
Copeland, Alex C;
McHardy, Alice C;
Szeto, Ernest;
Salamov, Asaf;
Grigoriev, Igor V;
Suciu, Dominic;
Levine, Samuel R;
Markowitz, Victor M;
Rigoutsos, Isidore;
Tringe, Susannah G;
Bruce, David C;
Richardson, Paul M;
Lidstrom, Mary E;
Chistoserdova, Ludmila

Publication type:

Article

Ecology and molecular targets of hypermutation in the global microbiome.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23402-7

By:

Roux, Simon;
Paul, Blair G.;
Bagby, Sarah C.;
Nayfach, Stephen;
Allen, Michelle A.;
Attwood, Graeme;
Cavicchioli, Ricardo;
Chistoserdova, Ludmila;
Gruninger, Robert J.;
Hallam, Steven J.;
Hernandez, Maria E.;
Hess, Matthias;
Liu, Wen-Tso;
McAllister, Tim A.;
O'Malley, Michelle A.;
Peng, Xuefeng;
Rich, Virginia I.;
Saleska, Scott R.;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

To methanotrophy and beyond! New insight into functional and ecological roles for copper chelators.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 1, p. 3, doi. 10.1038/s41396-021-01131-5

By:

Chistoserdova, Ludmila

Publication type:

Article

Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 8, p. 2005, doi. 10.1038/s41396-019-0414-z

By:

Huang, Jing;
Yu, Zheng;
Groom, Joseph;
Cheng, Jan-Fang;
Tarver, Angela;
Yoshikuni, Yasuo;
Chistoserdova, Ludmila

Publication type:

Article

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 5, p. 1119, doi. 10.1038/ismej.2014.203

By:

Oshkin, Igor Y;
Beck, David AC;
Lamb, Andrew E;
Tchesnokova, Veronika;
Benuska, Gabrielle;
McTaggart, Tami L;
Kalyuzhnaya, Marina G;
Dedysh, Svetlana N;
Lidstrom, Mary E;
Chistoserdova, Ludmila

Publication type:

Article

Works by Chistoserdova, Ludmila

Recent progress and new challenges in metagenomics for biotechnology.

Impacts of The Wetland Sedge Carex aquatilis on Microbial Community and Methane Metabolisms.

Electrochemically coupled CH<sub>4</sub> and CO<sub>2</sub> consumption driven by microbial processes.

Is metagenomics resolving identification of functions in microbial communities?

Functional Metagenomics: Recent Advances and Future Challenges.

Methylotrophs in natural habitats: current insights through metagenomics.

Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics.

Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington.

Wide Distribution of Genes for Tetrahydromethanopterin/ Methanofuran-Linked C1 Transfer Reactions Argues for Their Presence in the Common Ancestor of Bacteria and Archaea.

A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?

Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane.

Methylophilaceae link methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis.

Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties.

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption.

New pieces to the lanthanide puzzle.

Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686.

Multiphyletic origins of methylotrophy in A lphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates.

Modularity of methylotrophy, revisited.

Fishing for biodiversity: novel methanopterin-linked C<sub>1</sub> transfer genes deduced from the Sargasso Sea metagenome.

Development and application of polymerase chain reaction primers based on fhcD for environmental detection of methanopterin-linked C<sub>1</sub>-metabolism in bacteria.

The Enigmatic Planctomycetes May Hold a Key to the Origins of Methanogenesis and Methylotrophy.

The PTS Components in Klebsiella pneumoniae Affect Bacterial Capsular Polysaccharide Production and Macrophage Phagocytosis Resistance.

Metagenomic Insight into Environmentally Challenged Methane-Fed Microbial Communities.

The Expanded Diversity of <i>Methylophilaceae</i> from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes.

Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources.

High-resolution metagenomics targets specific functional types in complex microbial communities.

Ecology and molecular targets of hypermutation in the global microbiome.

To methanotrophy and beyond! New insight into functional and ecological roles for copper chelators.

Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes.

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response.