Works by Chikhi, Lounes

Results: 60

Facilitated Forest Restoration Using Pioneer Seed Dispersers in Madagascar: The Example of Microcebus spp.

Published in:

Land (2012), 2024, v. 13, n. 12, p. 1971, doi. 10.3390/land13121971

By:

Ganzhorn, Jörg U.;
Andriambeloson, Jean-Basile;
Atsalis, Sylvia;
Behrendt, Lis M.;
Blanco, Marina B.;
Bollen, An;
Carrière, Stéphanie M.;
Chikhi, Lounès;
Dammhahn, Melanie;
Donati, Giuseppe;
Eppley, Timothy M.;
Ernest, Refaly;
Giertz, Peggy;
Goodman, Steven M.;
Hending, Daniel;
Holst, Friederike;
Hyde Roberts, Sam;
Irwin, Mitchell T.;
Lahann, Petra;
Louis Jr., Edward E.

Publication type:

Article

The Neolithic transition in Europe: comparing broad scale genetic and local scale isotopic evidence.

Published in:

Antiquity, 2003, v. 77, n. 295, p. 63, doi. 10.1017/S0003598X00061342

By:

Bentley, R. Alexander;
Chikhi, Lounes;
Price, T. Douglas

Publication type:

Article

Reassessing the Evolutionary History of the 17q21 Inversion Polymorphism.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 12, p. 3239, doi. 10.1093/gbe/evv214

By:

Alves, Joao M.;
Lima, Ana C.;
Pais, Isa A.;
Amir, Nadir;
Celestino, Ricardo;
Piras, Giovanna;
Monne, Maria;
Comas, David;
Heutink, Peter;
Chikhi, Lounès;
Amorim, António;
Lopes, Alexandra M.

Publication type:

Article

The 8p23 Inversion Polymorphism Determines Local Recombination Heterogeneity across Human Populations.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 4, p. 921, doi. 10.1093/gbe/evu064

By:

Alves, Joao M.;
Chikhi, Lounès;
Amorim, António;
Lopes, Alexandra M.

Publication type:

Article

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-16

By:

Greminger, Maja P.;
Stölting, Kai N.;
Nater, Alexander;
Goossens, Benoit;
Arora, Natasha;
Bruggmann, Rémy;
Patrignani, Andrea;
Nussberger, Beatrice;
Sharma, Reeta;
Kraus, Robert H.;
Ambu, Laurentius N.;
Singleton, Ian;
Chikhi, Lounes;
van Schaik, Carel P.;
Krützen, Michael

Publication type:

Article

Signals of recent spatial expansions in the grey mouse lemur (Microcebus murinus).

Published in:

BMC Evolutionary Biology, 2010, v. 10, p. 105, doi. 10.1186/1471-2148-10-105

By:

Schneider, Nicole;
Chikhi, Lounès;
Currat, Mathias;
Radespiel, Ute

Publication type:

Article

Species‐Specific Traits Shape Genetic Diversity During an Expansion–Contraction Cycle and Bias Demographic History Reconstruction.

Published in:

Molecular Ecology, 2025, v. 34, n. 1, p. 1, doi. 10.1111/mec.17597

By:

Vishwakarma, Ravi;
Sgarlata, Gabriele Maria;
Soriano‐Paños, David;
Rasteiro, Rita;
Maié, Tiago;
Paixão, Tiago;
Tournebize, Rémi;
Chikhi, Lounès

Publication type:

Article

Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes.

Published in:

Journal of Mathematical Biology, 2019, v. 78, n. 1/2, p. 189, doi. 10.1007/s00285-018-1272-4

By:

Grusea, Simona;
Rodríguez, Willy;
Pinchon, Didier;
Chikhi, Lounès;
Boitard, Simon;
Mazet, Olivier

Publication type:

Article

The importance of well protected forests for the conservation genetics of West African colobine monkeys.

Published in:

American Journal of Primatology, 2023, v. 85, n. 1, p. 1, doi. 10.1002/ajp.23453

By:

Minhós, Tânia;
Borges, Filipa;
Parreira, Bárbara;
Oliveira, Rúben;
Aleixo‐Pais, Isa;
Leendertz, Fabien H.;
Wittig, Roman;
Fernandes, Carlos Rodríguez;
Marques Silva, Guilherme Henrique Lima;
Duarte, Miguel;
Bruford, Michael W.;
Ferreira da Silva, Maria Joana;
Chikhi, Lounès

Publication type:

Article

Ecology and morphology of mouse lemurs (Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species.

Published in:

American Journal of Primatology, 2020, v. 82, n. 9, p. 1, doi. 10.1002/ajp.23180

By:

Schüßler, Dominik;
Blanco, Marina B.;
Salmona, Jordi;
Poelstra, Jelmer;
Andriambeloson, Jean B.;
Miller, Alex;
Randrianambinina, Blanchard;
Rasolofoson, David W.;
Mantilla‐Contreras, Jasmin;
Chikhi, Lounès;
Louis, Edward E.;
Yoder, Anne D.;
Radespiel, Ute

Publication type:

Article

New density estimates of a threatened sifaka species ( Propithecus coquereli) in Ankarafantsika National Park.

Published in:

American Journal of Primatology, 2014, v. 76, n. 6, p. 515, doi. 10.1002/ajp.22243

By:

Kun‐Rodrigues, Célia;
Salmona, Jordi;
Besolo, Aubin;
Rasolondraibe, Emmanuel;
Rabarivola, Clément;
Marques, Tiago A.;
Chikhi, Lounès

Publication type:

Article

Density Estimates of Two Endangered Nocturnal Lemur Species From Northern Madagascar: New Results and a Comparison of Commonly Used Methods.

Published in:

American Journal of Primatology, 2012, v. 74, n. 5, p. 414, doi. 10.1002/ajp.21997

By:

MEYLER, SAMUEL VIANA;
SALMONA, JORDI;
IBOUROI, MOHAMED THANI;
BESOLO, AUBIN;
RASOLONDRAIBE, EMMANUEL;
RADESPIEL, UTE;
RABARIVOLA, CLÉMENT;
CHIKHI, LOUNES

Publication type:

Article

Spatial variation in density and total size estimates in fragmented primate populations: the golden-crowned sifaka (Propithecus tattersalli).

Published in:

American Journal of Primatology, 2010, v. 72, n. 1, p. 72, doi. 10.1002/ajp.20754

By:

Quéméré, Erwan;
Champeau, Julie;
Besolo, Aubin;
Rasolondraibe, Emmanuel;
Rabarivola, Clément;
Crouau-Roy, Brigitte;
Chikhi, Lounès

Publication type:

Article

Natural and anthropogenic determinants of genetic structure in the largest remaining population of the endangered golden-brown mouse lemur, Microcebus ravelobensis.

Published in:

American Journal of Primatology, 2008, v. 70, n. 9, p. 860, doi. 10.1002/ajp.20574

By:

Radespiel, Ute;
Rakotondravony, Romule;
Chikhi, Lounès

Publication type:

Article

Approximate Bayesian Computation Without Summary Statistics: The Case of Admixture.

Published in:

Genetics, 2009, v. 181, n. 4, p. 1507, doi. 10.1534/genetics.108.098129

By:

Sousa, Vitor C.;
Fritz, Marielle;
Beaumont, Mark A.;
Chikhi, Lounës

Publication type:

Article

Estimation of Admixture Proportions: A Likelihood-Based Approach Using Markov Chain Monte Carlo.

Published in:

Genetics, 2001, v. 158, n. 3, p. 1347, doi. 10.1093/genetics/158.3.1347

By:

Chikhi, Lounes;
Bruford, Michael W.;
Beaumont, Mark A.

Publication type:

Article

Population genomic structure in Goodman's mouse lemur reveals long‐standing separation of Madagascar's Central Highlands and eastern rainforests.

Published in:

Molecular Ecology, 2022, v. 31, n. 19, p. 4901, doi. 10.1111/mec.16632

By:

Tiley, George P.;
van Elst, Tobias;
Teixeira, Helena;
Schüßler, Dominik;
Salmona, Jordi;
Blanco, Marina B.;
Ralison, José M.;
Randrianambinina, Blanchard;
Rasoloarison, Rodin M.;
Stahlke, Amanda R.;
Hohenlohe, Paul A.;
Chikhi, Lounès;
Louis, Edward E.;
Radespiel, Ute;
Yoder, Anne D.

Publication type:

Article

Climate change and human colonization triggered habitat loss and fragmentation in Madagascar.

Published in:

Molecular Ecology, 2017, v. 26, n. 19, p. 5203, doi. 10.1111/mec.14173

By:

Salmona, Jordi;
Heller, Rasmus;
Quéméré, Erwan;
Chikhi, Lounès

Publication type:

Article

History of the invasive African olive tree in Australia and Hawaii: evidence for sequential bottlenecks and hybridization with the Mediterranean olive.

Published in:

Evolutionary Applications, 2014, v. 7, n. 2, p. 195, doi. 10.1111/eva.12110

By:

Besnard, Guillaume;
Dupuy, Jérémy;
Larter, Maximilien;
Cuneo, Peter;
Cooke, David;
Chikhi, Lounes

Publication type:

Article

Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar.

Published in:

BMC Ecology & Evolution, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12862-021-01929-z

By:

Teixeira, Helena;
Salmona, Jordi;
Arredondo, Armando;
Mourato, Beatriz;
Manzi, Sophie;
Rakotondravony, Romule;
Mazet, Olivier;
Chikhi, Lounès;
Metzger, Julia;
Radespiel, Ute

Publication type:

Article

Distribution and conservation status of the endangered Montagne d'Ambre fork-marked lemur (Phaner electromontis).

Published in:

Journal of Mammalogy, 2020, v. 101, n. 4, p. 1049, doi. 10.1093/jmammal/gyaa065

By:

Hending, Daniel;
Sgarlata, Gabriele M;
Pors, Barbara Le;
Rasolondraibe, Emmanuel;
Jan, Fabien;
Rakotonanahary, Ando N;
Ralantoharijaona, Tantely N;
Debulois, Stéphane;
Andrianiaina, Angelo;
Cotton, Sam;
Rasoloharijaona, Solofonirina;
Zaonarivelo, John R;
Andriaholinirina, Nicole V;
Chikhi, Lounès;
Salmona, Jordi

Publication type:

Article

Clinal Variation in the Nuclear DNA of Europeans.

Published in:

Human Biology, 2009, v. 81, n. 5/6, p. 625, doi. 10.3378/027.081.0611

By:

CHIKHI, LOUNÉS;
DESTRO-BISOL, GIOVANNI;
PASCALI, VINCENZO;
BARAVELLI, VANESSA;
DOBOSZ, MARINA;
BARBUJANI, GUIDO

Publication type:

Article

Update to Chikhi et al.'s "Clinal Variation in the Nuclear DNA of Europeans" (1998): Genetic Data and Storytelling--From Archaeogenetics to Astrologenetics?

Published in:

Human Biology, 2009, v. 81, n. 5/6, p. 639, doi. 10.3378/027.081.0612

By:

CHIKHI, LOUNÈS

Publication type:

Article

Clinical variation in the nuclear DNA of Europeans.

Published in:

Human Biology, 1998, v. 70, n. 4, p. 643

By:

Chikhi, Lounes;
Destro-Bisol, Giovanni;
Pascali, Vincenzo;
Baravelli, Vanessa;
Dobosz, Marina;
Barbujani, Guido

Publication type:

Article

A reference‐free approach to analyse RADseq data using standard next generation sequencing toolkits.

Published in:

Molecular Ecology Resources, 2021, v. 21, n. 4, p. 1085, doi. 10.1111/1755-0998.13324

By:

Heller, Rasmus;
Nursyifa, Casia;
Garcia‐Erill, Genís;
Salmona, Jordi;
Chikhi, Lounes;
Meisner, Jonas;
Korneliussen, Thorfinn Sand;
Albrechtsen, Anders

Publication type:

Article

A preliminary study of allozyme differences amongst Carcharhinus sharks from the continental slope near Abidjan, Côte d'lvoire.

Published in:

African Journal of Aquatic Science, 2007, v. 32, n. 3, p. 305, doi. 10.2989/AJAS.2007.32.3.11.310

By:

Adepo-Gourène, Béatrice;
Chikhi, Lounès;
Agnèse, Jean-François;
Gourène, Germain;
Hervé, Alain

Publication type:

Article

A novel parallel approach to the likelihood-based estimation of admixture in population genetics.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1440, doi. 10.1093/bioinformatics/btp136

By:

Ambra Giovannini;
Gaetano Zanghirati;
Mark A. Beaumont;
Lounès Chikhi;
Guido Barbujani

Publication type:

Article

Revisiting the peopling of Japan: an admixture perspective.

Published in:

Journal of Human Genetics, 2009, v. 54, n. 6, p. 349, doi. 10.1038/jhg.2009.39

By:

Rasteiro, Rita;
Chikhi, Lounès

Publication type:

Article

Effects of Social Structure on Effective Population Size Change Estimates.

Published in:

Evolutionary Applications, 2025, v. 18, n. 1, p. 1, doi. 10.1111/eva.70063

By:

Parreira, Bárbara Ribeiro;
Gopalakrishnan, Shyam;
Chikhi, Lounès

Publication type:

Article

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5685-2

By:

da Fonseca, Rute R.;
Ureña, Irene;
Afonso, Sandra;
Pires, Ana Elisabete;
Jørsboe, Emil;
Chikhi, Lounès;
Ginja, Catarina

Publication type:

Article

Estimating the Impact of Prehistoric Admixture on the Genome of Europeans.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 7, p. 1361, doi. 10.1093/molbev/msh135

By:

Dupanloup, Isabelle;
Bertorelle, Giorgio;
Chikhi, Lounes;
Barbujani, Guido

Publication type:

Article

Postdocs face hardship across mainland Europe.

Published in:

Nature, 2002, v. 415, n. 6869, p. 259, doi. 10.1038/415259a

By:

Chikhi, Lounès

Publication type:

Article

The genetic structure of a mouse lemur living in a fragmented habitat in Northern Madagascar.

Published in:

Conservation Genetics, 2019, v. 20, n. 2, p. 229, doi. 10.1007/s10592-018-1126-z

By:

Aleixo-Pais, Isa;
Salmona, Jordi;
Sgarlata, Gabriele Maria;
Rakotonanahary, Ando;
Sousa, Ana Priscilla;
Parreira, Bárbara;
Kun-Rodrigues, Célia;
Ralantoharijaona, Tantely;
Jan, Fabien;
Rasolondraibe, Emmanuel;
Minhós, Tânia;
Zaonarivelo, John Rigobert;
Andriaholinirina, Nicole Volasoa;
Chikhi, Lounès

Publication type:

Article

Non-invasive conservation genetics of the critically endangered golden-crowned sifaka ( Propithecus tattersalli): high diversity and significant genetic differentiation over a small range.

Published in:

Conservation Genetics, 2010, v. 11, n. 3, p. 675, doi. 10.1007/s10592-009-9837-9

By:

Quéméré, Erwan;
Louis Jr., Edward E.;
Ribéron, Alexandre;
Chikhi, Lounès;
Crouau-Roy, Brigitte

Publication type:

Article

Lemur inventory of the Analabe forest, SAVA region, and observation of an albino Eulemur.

Published in:

Lemur News, 2019, v. 22, p. 56

By:

Le Pors, Barbara;
Sgarlata, Gabriele Maria;
Salmona, Jordi;
Rasolondraibe, Emmanuel;
Ralantoharijaona, Tantely;
Randriamaroson, Jacquis;
Rasoloharijaona, Solofonirina;
Andriaholinirina, Nicole Volasoa;
Chikhi, Lounes

Publication type:

Article

The unique and isolated Phaner population of Analafiana (Vohémar, SAVA).

Published in:

Lemur News, 2018, v. 21, p. 31

By:

Salmona, Jordi;
Rasolondraibe, Emmanuel;
Jan, Fabien;
Rakotonanahary, Ando Nantenaina;
Ralantoharijaona, Tantely;
Le Pors, Barbara;
Ali Ousseni, Dhurham Said;
Aleixo-Pais, Isa;
Doncheff Marques, Adam Joseph;
Sgarlata, Gabriele Maria;
Teixeira, Helena;
Gabillaud, Vivien;
Miller, Alexandra;
Ibouroi, Mohamed Thani;
Zaonarivelo, John Rigobert;
Andriaholinirina, Nicole Volasoa;
Chikhi, Lounès

Publication type:

Article

Mouse lemurs' use of degraded habitat: a review of the literature.

Published in:

Lemur News, 2018, v. 21, p. 20

By:

Knoop, Simon;
Chikhi, Lounès;
Salmona, Jordi

Publication type:

Article

A biological survey of Antsahanadraitry forest (Alan'Antanetivy corridor, Manompana) reveals the presence of the hairy-eared dwarf lemur (Allocebus trichotis).

Published in:

Lemur News, 2015, v. 19, p. 4

By:

Miller, Alex;
Ralantoharijaona, Tantely;
Misandeau, Chantal;
Andriaholinirina Volasoa, Nicole;
Mills, Harriet;
Bencini, Roberta;
Chikhi, Lounès;
Salmona, Jordi

Publication type:

Article

Estimation des densités et tailles de population du Microcèbe Roux du Nord de (Microcebus tavaratra) dans la région Loky-Manambato (Daraina).

Published in:

Lemur News, 2014, v. 18, p. 73

By:

Salmona, Jordi;
Rakotonanahary, Ando;
Thani, Ibouroi Mohamed;
Zaranaina, Radavison;
Ralantoharijaona, Tantely;
Jan, Fabien;
Rasolondraibe, Emmanuel;
Barnavon, Mélanie;
Beck, Angelika;
Wohlhauser, Sébastien;
Ranirison, Patrick;
Zaonarivelo, John Rigobert;
Rabarivola, Clément;
Chikhi, Lounès

Publication type:

Article

Daraina sportive lemur (Lepilemur milanoii) density and population size estimates in most of its distribution range: the Loky-Manambato region.

Published in:

Lemur News, 2014, v. 18, p. 16

By:

Salmona, Jordi;
Ralantoharijaona, Tantely;
Thani, Ibouroi Mohamed;
Rakotonanahary, Ando;
Zaranaina, Radavison;
Jan, Fabien;
Rasolondraibe, Emmanuel;
Barnavon, Mélanie;
Beck, Angelika;
Wohlhauser, Sébastien;
Ranirison, Patrick;
Zaonarivelo, John Rigobert;
Rabarivola, Clément;
Chikhi, Lounès

Publication type:

Article

Contribution of spatial heterogeneity in effective population sizes to the variance in pairwise measures of genetic differentiation.

Published in:

Methods in Ecology & Evolution, 2017, v. 8, n. 12, p. 1866, doi. 10.1111/2041-210X.12820

By:

Prunier, Jérôme G.;
Dubut, Vincent;
Chikhi, Lounès;
Blanchet, Simon;
Gaggiotti, Oscar

Publication type:

Article

Forest Type Influences Population Densities of Nocturnal Lemurs in Manompana, Northeastern Madagascar.

Published in:

International Journal of Primatology, 2018, v. 39, n. 4, p. 646, doi. 10.1007/s10764-018-0055-5

By:

Miller, Alex;
Mills, Harriet;
Ralantoharijaona, Tantely;
Volasoa, Nicole Andriaholinirina;
Misandeau, Chantal;
Chikhi, Lounès;
Bencini, Roberta;
Salmona, Jordi

Publication type:

Article

Genetic Differentiation and Demographic History of the Northern Rufous Mouse Lemur (<italic>Microcebus tavaratra</italic>) Across a Fragmented Landscape in Northern Madagascar.

Published in:

International Journal of Primatology, 2018, v. 39, n. 1, p. 65, doi. 10.1007/s10764-018-0015-0

By:

Sgarlata, Gabriele Maria;
Salmona, Jordi;
Aleixo-Pais, Isa;
Rakotonanahary, Ando;
Sousa, Ana Priscila;
Kun-Rodrigues, Célia;
Ralantoharijaona, Tantely;
Jan, Fabien;
Zaranaina, Radavison;
Rasolondraibe, Emmanuel;
Zaonarivelo, John Rigobert;
Andriaholinirina, Nicole Volasoa;
Chikhi, Lounès

Publication type:

Article

Genetic Diversity, Population Size, and Conservation of the Critically Endangered Perrier's Sifaka ( Propithecus perrieri).

Published in:

International Journal of Primatology, 2015, v. 36, n. 6, p. 1132, doi. 10.1007/s10764-015-9881-x

By:

Salmona, Jordi;
Teixeira, Helena;
Rasolondraibe, Emmanuel;
Aleixo-Pais, Isa;
Kun-Rodrigues, Célia;
Rakotonanahary, Ando;
Jan, Fabien;
Rabarivola, Clément;
Zaonarivelo, John;
Andriaholinirina, Nicole;
Chikhi, Lounès

Publication type:

Article

Mitochondrial Genetic Diversity in the Crowned Sifaka (Propithecus coronatus) in a Fragmented Landscape.

Published in:

Primate Conservation, 2016, n. 30, p. 39

By:

Sgarlata, Gabriele Maria;
Salmona, Jordi;
Razanaparany, Tojotanjona Patrick;
Rabarivola, Clément Joseph;
Jan, Fabien;
Rasolondraibe, Emmanuel;
Andriaholinirina, Nicole Volasoa;
Lafosse, Sophie;
Chikhi, Lounès;
Manni, Franz;
Bayart, Françoise

Publication type:

Article

Conservation Status and Abundance of the Crowned Sifaka (Propithecus coronatus).

Published in:

Primate Conservation, 2014, n. 28, p. 73, doi. 10.1896/052.028.0122

By:

Salmona, Jordi;
Rasolondraibe, Emmanuel;
Jan, Fabien;
Besolo, Aubin;
Rakotoarisoa, Heriniaina;
Meyler, Sam Viana;
Wohlhauser, Sébastien;
Rabarivola, Clément;
Chikhi, Lounès

Publication type:

Article

Special Section on the Crowned Sifaka Propithecus coronatus: Introduction.

Published in:

Primate Conservation, 2014, n. 28, p. 39

By:

Razaindramanana, Josia;
King, Tony;
Chikhi, Lounès;
Schwitzer, Christoph;
Ratsimbazafy, Jonah

Publication type:

Article

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062992

By:

Heller, Rasmus;
Chikhi, Lounes;
Siegismund, Hans Redlef

Publication type:

Article

Female and Male Perspectives on the Neolithic Transition in Europe: Clues from Ancient and Modern Genetic Data.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0060944

By:

Rasteiro, Rita;
Chikhi, Lounès

Publication type:

Article

A DNA Metabarcoding Study of a Primate Dietary Diversity and Plasticity across Its Entire Fragmented Range.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058971

By:

Quéméré, Erwan;
Hibert, Fabrice;
Miquel, Christian;
Lhuillier, Emeline;
Rasolondraibe, Emmanuel;
Champeau, Julie;
Rabarivola, Clément;
Nusbaumer, Louis;
Chatelain, Cyrille;
Gautier, Laurent;
Ranirison, Patrick;
Crouau-Roy, Brigitte;
Taberlet, Pierre;
Chikhi, Lounès

Publication type:

Article