Works by Chen, Yidong

Results: 221

DNA methylome reveals cellular origin of cell-free DNA in spent medium of human preimplantation embryos.

Published in:

2021

By:

Yidong Chen;
Yuan Gao;
Jialin Jia;
Liang Chang;
Ping Liu;
Jie Qiao;
Fuchou Tang;
Lu Wen;
Jin Huang;
Chen, Yidong;
Gao, Yuan;
Jia, Jialin;
Chang, Liang;
Liu, Ping;
Qiao, Jie;
Tang, Fuchou;
Wen, Lu;
Huang, Jin

Publication type:

journal article

Data augmentation and debiasing for signers in signer-independent sign language translation: Data augmentation and debiasing for signers...: H. Fu, Y. Chen.

Published in:

Journal of Supercomputing, 2025, v. 81, n. 4, p. 1, doi. 10.1007/s11227-025-07119-8

By:

Fu, Honghao;
Chen, Yidong

Publication type:

Article

Assessing the moderating effect of environmental regulation on the process of media reports affecting enterprise investment inefficiency in China.

Published in:

Humanities & Social Sciences Communications, 2024, v. 11, n. 1, p. 1, doi. 10.1057/s41599-024-02677-3

By:

Feng, Yanchao;
Huang, Rongbing;
Chen, Yidong;
Sui, Guoshuo

Publication type:

Article

LINC02139 interacts with and stabilizes XIAP to regulate cell proliferation and apoptosis in gastric cancer.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07202-5

By:

Pei, Miaomiao;
Zhang, Jieming;
Yu, Zhen;
Peng, Ying;
Chen, Yidong;
Peng, Siyang;
Wei, Xiangyang;
Wu, Jieke;
Huang, Xiaodong;
Xie, Yanci;
Yang, Ping;
Hong, Linjie;
Huang, Xiaoting;
Wu, Xiaosheng;
Tang, Weimei;
Chen, Ye;
Liu, Side;
Lin, Jianjiao;
Xiang, Li;
Wang, Jide

Publication type:

Article

Defining function of wild-type and three patient-specific TP53 mutations in a zebrafish model of embryonal rhabdomyosarcoma.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.68221

By:

Jiangfei Chen;
Baxi, Kunal;
Lipsitt, Amanda E.;
Hensch, Nicole Rae;
Long Wang;
Sreenivas, Prethish;
Paulomi Modi;
Xiang Ru Zhao;
Baudin, Antoine;
Robledo, Daniel G.;
Bandyopadhyay, Abhik;
Sugalski, Aaron;
Challa, Anil K.;
Kurmashev, Dias;
Gilbert, Andrea R.;
Tomlinson, Gail E.;
Houghton, Peter;
Yidong Chen;
Hayes, Madeline N.;
Chen, Eleanor Y.

Publication type:

Article

Delivery of bone marrow mesenchymal stem cell-derived exosomes into fibroblasts attenuates intestinal fibrosis by weakening its transdifferentiation via the CCN2-TGF-β axis.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-02971-3

By:

Ling, Fangmei;
Yang, Wenkai;
Yuan, Meng;
Chen, Yidong;
Li, Junrong;
Wu, Jinhua;
Zhu, Liangru

Publication type:

Article

An updated review of gastrointestinal toxicity induced by PD-1 inhibitors: from mechanisms to management.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1190850

By:

Yiyu Cheng;
Fangmei Ling;
Junrong Li;
Yidong Chen;
Mingyang Xu;
Shuang Li;
Liangru Zhu

Publication type:

Article

Advancing Continuous Sign Language Recognition Through Denoising Diffusion Transformer‐Based Spatial‐Temporal Enhancement.

Published in:

Concurrency & Computation: Practice & Experience, 2025, v. 37, n. 4/5, p. 1, doi. 10.1002/cpe.8385

By:

Muhammad Kamal, Suhail;
Chen, Yidong;
Li, Shaozi

Publication type:

Article

Adversarial autoencoder for continuous sign language recognition.

Published in:

Concurrency & Computation: Practice & Experience, 2024, v. 36, n. 22, p. 1, doi. 10.1002/cpe.8220

By:

Kamal, Suhail Muhammad;
Chen, Yidong;
Li, Shaozi

Publication type:

Article

Gpnmb is a melanoblast-expressed, MITF-dependent gene.

Published in:

Pigment Cell & Melanoma Research, 2009, v. 22, n. 1, p. 99, doi. 10.1111/j.1755-148X.2008.00518.x

By:

Loftus, Stacie K.;
Antonellis, Anthony;
Matera, Ivana;
Renaud, Gabriel;
Baxter, Laura L.;
Reid, Duncan;
Wolfsberg, Tyra G.;
Chen, Yidong;
ChenWei Wang;
Prasad, Megana K.;
Bessling, Seneca L.;
McCallion, Andrew S.;
Green, Eric D.;
Bennett, Dorothy C.;
Pavan, William J.

Publication type:

Article

Amine-modified random primers to label probes for DNA microarrays.

Published in:

Nature Biotechnology, 2002, v. 20, n. 7, p. 738, doi. 10.1038/nbt0702-738

By:

Xiang, Charlie C.;
Kozhich, Olga A.;
Chen, Mei;
Inman, Jason M.;
Phan, Quang N.;
Chen, Yidong;
Brownstein, Michael J.

Publication type:

Article

PELP1 inhibition by SMIP34 reduces endometrial cancer progression via attenuation of ribosomal biogenesis.

Published in:

Molecular Oncology, 2024, v. 18, n. 9, p. 2136, doi. 10.1002/1878-0261.13539

By:

Yang, Xue;
Liu, Zexuan;
Tang, Weiwei;
Pratap, Uday P.;
Collier, Alexia B.;
Altwegg, Kristin A.;
Gopalam, Rahul;
Li, Xiaonan;
Yuan, Yaxia;
Zhou, Daohong;
Lai, Zhao;
Chen, Yidong;
Sareddy, Gangadhara R.;
Valente, Philip T.;
Kost, Edward R.;
Viswanadhapalli, Suryavathi;
Vadlamudi, Ratna K.

Publication type:

Article

PELP1 oncogenic functions involve alternative splicing via PRMT6.

Published in:

Molecular Oncology, 2014, v. 8, n. 2, p. 389, doi. 10.1016/j.molonc.2013.12.012

By:

Mann, Monica;
Zou, Yi;
Chen, Yidong;
Brann, Darrell;
Vadlamudi, Ratna

Publication type:

Article

scdNet: a computational tool for single-cell differential network analysis.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0652-0

By:

Chiu, Yu-Chiao;
Hsiao, Tzu-Hung;
Wang, Li-Ju;
Chen, Yidong;
Shao, Yu-Hsuan Joni

Publication type:

Article

GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0642-2

By:

Chen, Hung-I Harry;
Chiu, Yu-Chiao;
Zhang, Tinghe;
Zhang, Songyao;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Inhibitory Interplay of SULT2B1b Sulfotransferase with AKR1C3 Aldo-keto Reductase in Prostate Cancer.

Published in:

Endocrinology, 2020, v. 161, n. 2, p. 1, doi. 10.1210/endocr/bqz042

By:

Park, Sulgi;
Song, Chung-Seog;
Lin, Chun-Lin;
Jiang, Shoulei;
Osmulski, Pawel A;
Wang, Chiou-Miin;
Marck, Brett T;
Matsumoto, Alvin M;
Morrissey, Colm;
Gaczynska, Maria E;
Chen, Yidong;
Mostaghel, Elahe A;
Chatterjee, Bandana

Publication type:

Article

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.

Published in:

BMC Cancer, 2017, v. 17, p. 1, doi. 10.1186/s12859-017-1557-4

By:

Yu-Chiao Chiu;
Li-Ju Wang;
Tzu-Pin Lu;
Tzu-Hung Hsiao;
Chuang, Eric Y.;
Yidong Chen

Publication type:

Article

Classification of trabecular structure in magnetic resonance images based on morphological granulometries.

Published in:

Magnetic Resonance in Medicine, 1993, v. 29, n. 3, p. 358, doi. 10.1002/mrm.1910290312

By:

Chen, Yidong;
Dougherty, Edward R.;
Totterman, Saara M.;
Hornak, Joseph P.

Publication type:

Article

Genetic markers for treatment-related pancreatitis in a cohort of Hispanic children with acute lymphoblastic leukemia.

Published in:

2021

By:

Grimes, Allison C.;
Chen, Yidong;
Bansal, Hima;
Aguilar, Christine;
Perez Prado, Luz;
Quezada, Gerardo;
Estrada, Jaime;
Tomlinson, Gail E.

Publication type:

journal article

TGFβ and Hippo Signaling Pathways Coordinate to Promote Acinar to Ductal Metaplasia in Human Pancreas.

Published in:

Cells (2073-4409), 2024, v. 13, n. 2, p. 186, doi. 10.3390/cells13020186

By:

Nipper, Michael;
Xu, Yi;
Liu, Jun;
Yin, Xue;
Liu, Zhijie;
Ye, Zhengqing;
Zhang, Jianmin;
Chen, Yidong;
Wang, Pei

Publication type:

Article

The RNA Demethylase ALKBH5 Maintains Endoplasmic Reticulum Homeostasis by Regulating UPR, Autophagy, and Mitochondrial Function.

Published in:

Cells (2073-4409), 2023, v. 12, n. 9, p. 1283, doi. 10.3390/cells12091283

By:

Subbarayalu, Panneerdoss;
Yadav, Pooja;
Timilsina, Santosh;
Medina, Daisy;
Baxi, Kunal;
Hromas, Robert;
Vadlamudi, Ratna K.;
Chen, Yidong;
Sung, Patrick;
Rao, Manjeet K.

Publication type:

Article

Defective Immune Function of Primary Effusion Lymphoma Cells is Associated with Distinct KSHV Gene Expression Profiles.

Published in:

Leukemia & Lymphoma, 2004, v. 45, n. 6, p. 1223, doi. 10.1080/10428190310001643358

By:

Suscovich, Todd J.;
Paulose-Murphy, Mini;
Harlow, Jason D.;
Yidong Chen;
Thomas, Seddon Y.;
Mellott, Tiffany J.;
Walker, Bruce D.;
Scadden, David T.;
Zeichner, Steven;
Brander, Christian

Publication type:

Article

Effects of SARS-CoV-2 infection on human reproduction.

Published in:

Journal of Molecular Cell Biology, 2021, v. 13, n. 10, p. 695, doi. 10.1093/jmcb/mjab025

By:

Yang, Ming;
Wang, Jing;
Chen, Yidong;
Kong, Siming;
Qiao, Jie

Publication type:

Article

Convolutional neural network models for cancer type prediction based on gene expression.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0677-2

By:

Mostavi, Milad;
Chiu, Yu-Chiao;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Correction to: Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Published in:

2019

By:

Chiu, Yu-Chiao;
Chen, Hung-I Harry;
Zhang, Tinghe;
Zhang, Songyao;
Gorthi, Aparna;
Wang, Li-Ju;
Huang, Yufei;
Chen, Yidong

Publication type:

Correction Notice

Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-018-0460-9

By:

Chiu, Yu-Chiao;
Chen, Hung-I Harry;
Zhang, Tinghe;
Zhang, Songyao;
Gorthi, Aparna;
Wang, Li-Ju;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Published in:

BMC Medical Genomics, 2019, v. 12, p. N.PAG, doi. 10.1186/s12920-018-0460-9

By:

Chiu, Yu-Chiao;
Chen, Hung-I Harry;
Zhang, Tinghe;
Zhang, Songyao;
Gorthi, Aparna;
Wang, Li-Ju;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Intelligent Cloud Learning Model for Online Overseas Chinese Education.

Published in:

International Journal of Emerging Technologies in Learning, 2015, v. 10, n. 1, p. 55, doi. 10.3991/ijet.v10i1.4284

By:

Zhehuang Huang;
Xiaodong Shi;
Yidong Chen

Publication type:

Article

Log-Linear Model Based Behavior Selection Method for Artificial Fish Swarm Algorithm.

Published in:

Computational Intelligence & Neuroscience, 2015, v. 2015, p. 1, doi. 10.1155/2015/685404

By:

Huang, Zhehuang;
Chen, Yidong

Publication type:

Article

Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer.

Published in:

Nature Genetics, 2004, v. 36, n. 9, p. 979, doi. 10.1038/ng1408

By:

Huusko, Pia;
Ponciano-Jackson, Damaris;
Wolf, Maija;
Kiefer, Jeff A.;
Azorsa, David O.;
Tuzmen, Sukru;
Weaver, Don;
Robbins, Christiane;
Moses, Tracy;
Allinen, Minna;
Hautaniemi, Sampsa;
Chen, Yidong;
Elkahloun, Abdel;
Basik, Mark;
Bova, G. Steven;
Bubendorf, Lukas;
Lugli, Alessandro;
Sauter, Guido;
Schleutker, Johanna;
Ozcelik, Hilmi

Publication type:

Article

Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease.

Published in:

Nature Genetics, 2001, v. 29, n. 2, p. 143, doi. 10.1038/ng731

By:

MacDonald, Tobey J.;
Brown, Kevin M.;
LaFleur, Bonnie;
Peterson, Katia;
Lawlor, Christopher;
Chen, Yidong;
Packer, Roger J.;
Cogen, Philip;
Stephan, Dietrich A.

Publication type:

Article

A layered perceptron approach to categorizing cDNA microarray measurements.

Published in:

2001

By:

Ringner, Markus;
Peterson, Carsten;
Gruvberger, Sofia;
Fernö, Mårten;
Borg, Åke;
Khan, Javed;
Wei, Jun;
Saal, Lao;
Chen, Yidong;
Ladanyi, Marc;
Meltzer, Paul S.;
Trent, Jeff M.

Publication type:

Abstract

Development of a molecular taxonomy of small blue round-cell tumors using cDNA microarrays.

Published in:

2001

By:

Khan, Javed;
Wei, Jun;
Saal, Lao;
Marc, Ladanyi;
Markus, Ringnér;
Peterson, Carsten;
Chen, Yidong;
Meltzer, Paul

Publication type:

Abstract

Classification of hereditary breast cancers based on gene expression.

Published in:

2001

By:

Hedenfalk, Ingrid;
Chen, Yidong;
Duggan, David;
Borg, Åke;
Trent, Jeffrey

Publication type:

Abstract

Clustering algorithms: can anything be concluded?

Published in:

2001

By:

Dougherty, Edward;
Barrera, Junior;
Brun, Marcel;
Kim, Seungchan;
Marcondes, Roberto;
Chen, Yidong;
Bittner, Michael;
Trent, Jeffrey

Publication type:

Abstract

Relationship between gene expression profile and clinical outcome in malignant melanoma.

Published in:

2001

By:

Carr, Kristen;
Bittner, Mike;
Chen, Yidong;
Meltzer, Paul;
Duray, Paul;
Sondak, Vern;
Trent, Jeffrey

Publication type:

Abstract

Microarray-based genetic analysis of synovial sarcomas.

Published in:

2001

By:

Allander, Susanne;
Chen, Yidong;
Ladanyi, Marc;
Meltzer, Paul

Publication type:

Abstract

Microarray ratio analysis under noisy background.

Published in:

1999

By:

Chen, Yidong;
Kamat, Vishnu;
Dougherty, Edward R.;
Bittner, Michael L.;
Meltzer, Paul S.;
Trent, Jeffery M.

Publication type:

Abstract

Nonlinear stochastic determination for gene expressions via cDNA microarrays.

Published in:

1999

By:

Dougherty, Edward R.;
Kim, Seungchan;
Bittner, Michael L.;
Chen, Yidong;
Sivakumar, Krishnamoorthy;
Meltzer, Paul;
Trent, Jeffrey M.

Publication type:

Abstract

Microarray analysis discriminates BRCA2 mutation-positive from BRCA1 and sporadic breast cancer patient tumour biopsies.

Published in:

1999

By:

Duggan, David J.;
Hedenfalk, Ingrid A.;
Chen, Yidong;
Bittner, Mike;
Borg, Åke;
Trent, Jeffrey

Publication type:

Abstract

Determining the quantitative accuracy of cDNA microarrays.

Published in:

1999

By:

Gooden, Gerald;
Morse, David;
Glatfelter, Arthur;
Chen, Yidong;
Trent, Jeffrey M.;
Meltzer, Paul S.;
Bittner, Michael

Publication type:

Abstract

Gene expression profiling of human bone marrow stromal cells with FGFR-3 mutation (K650M) using cDNA microarrays.

Published in:

1999

By:

Jia, Libin;
Bittner, Michael;
Chen, Yidong;
Gooden, Kris;
Jiang, Yuan;
Trent, Jeffery;
Keen, Erica;
DeRubeis, Anna R.;
Kuznetsov, Sergei;
Robey, Pamela;
Young, Marian;
Powell, John;
Yang, Liming;
Hotchkiss, Robert;
Francomano, Claire

Publication type:

Abstract

Evaluating altered levels of gene expression in cancer cells.

Published in:

1999

By:

Jiang, Yuan;
Chen, Yidong;
Su, Yan;
Wang, Ena;
Marincola, Francesco M.;
Dougherty, Edward R.;
Meltzer, Paul S.;
Bittner, Michael;
Trent, Jeffery M.

Publication type:

Abstract

Profiling expression patterns of 2,214 unigenes in mouse craniofacial development by cDNA microarray analysis.

Published in:

1999

By:

Li, Haochuan;
Chen, Yidong;
Jiang, Yuan;
Bittner, Michael L.;
Meltzer, Paul S.;
Trent, Jeffery M.;
Yamada, Kenneth M.;
Yamada, Yoshihiko

Publication type:

Abstract

Identification of suppressor genes associated with the chromosome 6-mediated suppressed melanoma cell UACC903(+6) by cDNA microarray.

Published in:

1999

By:

Su, Yan A.;
Bittner, Michael L.;
Chen, Yidong;
Tao, Lian;
Jiang, Yuan;
Trent, Jeffrey M.

Publication type:

Abstract

Isolation of chromosome 6-encoded differentially expressed genes associated with breast cancer cell lines MDA-MB-231 and MDA/H6 by cDNA microarray.

Published in:

1999

By:

Tao, Lian;
Elkahloun, Abdel G.;
Nguyen, Hein T.;
Chen, Yidong;
Lippman, Marc E.;
Su, Yan A.

Publication type:

Abstract

Expression profiling using cDNA microarrays.

Published in:

Nature Genetics, 1999, v. 21, p. 10, doi. 10.1038/4434

By:

Duggan, David J;
Bittner, Michael;
Chen, Yidong;
Meltzer, Paul;
Trent, Jeffrey M.

Publication type:

Article

Data management and analysis for gene expression arrays.

Published in:

Nature Genetics, 1998, v. 20, n. 1, p. 19, doi. 10.1038/1670

By:

Ermolaeva, Olga;
Rastogi, Mohit;
Pruitt, Kim D.;
Schuler, Gregory D.;
Bittner, Michael L.;
Chen, Yidong;
Simon, Richard;
Meltzer, Paul;
Trent, Jeffrey M.;
Boguski, Mark S.

Publication type:

Article

An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6333-6

By:

Wang, Li-Ju;
Zhang, Catherine W.;
Su, Sophia C.;
Chen, Hung-I H.;
Chiu, Yu-Chiao;
Lai, Zhao;
Bouamar, Hakim;
Ramirez, Amelie G.;
Cigarroa, Francisco G.;
Sun, Lu-Zhe;
Chen, Yidong

Publication type:

Article

CeL-ID: cell line identification using RNA-seq data.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5371-9

By:

Mohammad, Tabrez A.;
Tsai, Yun S.;
Ameer, Safwa;
Chen, Hung-I Harry;
Chiu, Yu-Chiao;
Chen, Yidong

Publication type:

Article