Works by Chen, Runsheng

Results: 100

Dinosaur track assemblages from mid-Cretaceous of Fujian Province, southeastern China: ichnotaxonomic review and faunal comparison.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19597

By:

Xing, Lida;
Niu, Kecheng;
Chen, Qiyan;
Klein, Hendrik;
Romilio, Anthony;
Chen, Runsheng;
Lin, Min;
Deng, Ke;
Tang, Jianrong

Publication type:

Article

Discovering hematomastimulated circuits for secondary brain injury after intraventricular hemorrhage by spatial transcriptome analysis.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1123652

By:

Le Zhang;
Badai, Jiayidaer;
Guan Wang;
Xufang Ru;
Wenkai Song;
Yujie You;
Jiaojiao He;
Suna Huang;
Hua Feng;
Runsheng Chen;
Yi Zhao;
Yujie Chen

Publication type:

Article

TDP-43 regulates cancer-associated microRNAs.

Published in:

Protein & Cell, 2018, v. 9, n. 10, p. 848, doi. 10.1007/s13238-017-0480-9

By:

Chen, Xiaowei;
Fan, Zhen;
McGee, Warren;
Chen, Mengmeng;
Kong, Ruirui;
Wen, Pushuai;
Xiao, Tengfei;
Chen, Xiaomin;
Liu, Jianghong;
Zhu, Li;
Chen, Runsheng;
Wu, Jane Y.

Publication type:

Article

Analysis of the p53/CEP-1 regulated non-coding transcriptome in C. elegans by an NSR-seq strategy.

Published in:

Protein & Cell, 2014, v. 5, n. 10, p. 770, doi. 10.1007/s13238-014-0071-y

By:

Xu, Derong;
Wei, Guifeng;
Lu, Ping;
Luo, Jianjun;
Chen, Xiaomin;
Skogerbø, Geir;
Chen, Runsheng

Publication type:

Article

Light-induced protein translocation by genetically encoded unnatural amino acid in <i>Caenorhabditis elegans</i>.

Published in:

2013

By:

Chang, Hao;
Han, Mei;
Huang, Wenming;
Wei, Guifeng;
Chen, Juanjuan;
Chen, Peng R.;
Chen, Runsheng;
Zhang, Junlong;
Xu, Tao;
Xu, Pingyong

Publication type:

Letter

CloudLCA: finding the lowest common ancestor in metagenome analysis using cloud computing.

Published in:

Protein & Cell, 2012, v. 3, n. 2, p. 148, doi. 10.1007/s13238-012-2015-8

By:

Zhao, Guoguang;
Bu, Dechao;
Liu, Changning;
Li, Jing;
Yang, Jian;
Liu, Zhiyong;
Zhao, Yi;
Chen, Runsheng

Publication type:

Article

Readon: a novel algorithm to identify read-through transcripts with long-read sequencing data.

Published in:

Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae336

By:

Chen, Siang;
Wang, Hao;
Zhang, Dongdong;
Chen, Runsheng;
Luo, Jianjun

Publication type:

Article

A novel antisense long noncoding RNA,<italic> TWISTED LEAF</italic>, maintains leaf blade flattening by regulating its associated sense R2R3‐MYB gene in rice.

Published in:

New Phytologist, 2018, v. 218, n. 2, p. 774, doi. 10.1111/nph.15023

By:

Liu, Xue;
Li, Dayong;
Zhang, Donglei;
Yin, Dedong;
Zhao, Yi;
Ji, Chengjun;
Zhao, Xianfeng;
Li, Xiaobing;
He, Qun;
Chen, Runsheng;
Hu, Songnian;
Zhu, Lihuang

Publication type:

Article

Evolution and migration history of the Chinese population inferred from Chinese Y-chromosome evidence.

Published in:

Journal of Human Genetics, 2004, v. 49, n. 7, p. 339, doi. 10.1007/s10038-004-0154-3

By:

Wei Deng;
Baochen Shi;
Xiaoli He;
Zhihua Zhang;
Jun Xu;
Bioa li;
Jian Yang;
Lunjiang Ling;
Chengping Dai;
Boqin Qiang;
Yan Shen;
Runsheng Chen

Publication type:

Article

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e35, doi. 10.1093/nar/gks967

By:

Guo, Xingli;
Gao, Lin;
Liao, Qi;
Xiao, Hui;
Ma, Xiaoke;
Yang, Xiaofei;
Luo, Haitao;
Zhao, Guoguang;
Bu, Dechao;
Jiao, Fei;
Shao, Qixiang;
Chen, RunSheng;
Zhao, Yi

Publication type:

Article

The novel long non-coding RNA CRG regulates Drosophila locomotor behavior.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11714, doi. 10.1093/nar/gks943

By:

Li, Meixia;
Wen, Shengyun;
Guo, Xiangqian;
Bai, Baoyan;
Gong, Zhefeng;
Liu, Xiaojun;
Wang, Yijin;
Zhou, Yanqiong;
Chen, Xiaowei;
Liu, Li;
Chen, Runsheng

Publication type:

Article

NONCODE v3.0: integrative annotation of long noncoding RNAs.

Published in:

Nucleic Acids Research, 2012, p. D210

By:

Bu, Dechao;
Yu, Kuntao;
Sun, Silong;
Xie, Chaoyong;
Skogerbø, Geir;
Miao, Ruoyu;
Xiao, Hui;
Liao, Qi;
Luo, Haitao;
Zhao, Guoguang;
Zhao, Haitao;
Liu, Zhiyong;
Liu, Changning;
Chen, Runsheng;
Zhao, Yi

Publication type:

Article

ncFANs: a web server for functional annotation of long non-coding RNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W118, doi. 10.1093/nar/gkr432

By:

Liao, Qi;
Xiao, Hui;
Bu, Dechao;
Xie, Chaoyong;
Miao, Ruoyu;
Luo, Haitao;
Zhao, Guoguang;
Yu, Kuntao;
Zhao, Haitao;
Skogerbø, Geir;
Chen, Runsheng;
Wu, Zhongdao;
Liu, Changning;
Zhao, Yi

Publication type:

Article

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5203, doi. 10.1093/nar/gkr102

By:

Wang, Yunfei;
Chen, Jingjing;
Wei, Guifeng;
He, Housheng;
Zhu, Xiaopeng;
Xiao, Tengfei;
Yuan, Jiao;
Dong, Bo;
He, Shunmin;
Skogerbø, Geir;
Chen, Runsheng

Publication type:

Article

Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 9, p. 3792, doi. 10.1093/nar/gkq1317

By:

Li, Dandan;
Wang, Yanhong;
Zhang, Kun;
Jiao, Zhujin;
Zhu, Xiaopeng;
Skogerboe, Geir;
Guo, Xiangqian;
Chinnusamy, Viswanathan;
Bi, Lijun;
Huang, Yongping;
Dong, Shuanglin;
Chen, Runsheng;
Kan, Yunchao

Publication type:

Article

Systematic identification and characterization of chicken (Gallus gallus) ncRNAs.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 19, p. 6562, doi. 10.1093/nar/gkp704

By:

Zhang, Yong;
Wang, Jie;
Huang, Shoujun;
Zhu, Xiaopeng;
Liu, Jun;
Yang, Ning;
Song, Dandan;
Wu, Rimao;
Deng, Wei;
Skogerbø, Geir;
Wang, Xiu-Jie;
Chen, Runsheng;
Zhu, Dahai

Publication type:

Article

NONCODE v2.0: decoding the non-coding.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D170

By:

He, Shunmin;
Liu, Changning;
Skogerbø, Geir;
Zhao, Haitao;
Wang, Jie;
Liu, Tao;
Bai, Baoyan;
Zhao, Yi;
Chen, Runsheng

Publication type:

Article

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2976

By:

He, Housheng;
Cai, Lun;
Skogerbø, Geir;
Deng, Wei;
Liu, Tao;
Zhu, Xiaopeng;
Wang, Yudong;
Jia, Dong;
Zhang, Zhihua;
Tao, Yong;
Zeng, Haipan;
Aftab, Muhammad Nauman;
Cui, Yan;
Liu, Guozhen;
Chen, Runsheng

Publication type:

Article

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d150

By:

Wu, Tao;
Wang, Jie;
Liu, Changning;
Zhang, Yong;
Shi, Baochen;
Zhu, Xiaopeng;
Zhang, Zhihua;
Skogerbø, Geir;
Chen, Lan;
Lu, Hongchao;
Zhao, Yi;
Chen, Runsheng

Publication type:

Article

NONCODE: an integrated knowledge database of non-coding RNAs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d112

By:

Liu, Changning;
Bai, Baoyan;
Skogerbø, Geir;
Cai, Lun;
Deng, Wei;
Zhang, Yong;
Bu, Dongbo;
Zhao, Yi;
Chen, Runsheng

Publication type:

Article

Reversibly switchable DNA nanocompartment on surfaces.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 19, p. e144, doi. 10.1093/nar/gnh145

By:

Mao, Youdong;
Luo, Chunxiong;
Deng, Wei;
Jin, Guangyin;
Yu, Xiaomei;
Zhang, Zhaohui;
Ouyang, Qi;
Chen, Runsheng;
Yu, Dapeng

Publication type:

Article

The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 16, p. 4804

By:

Lu, Hongchao;
Zhu, Xiaopeng;
Liu, Haifeng;
Skogerbø, Geir;
Zhang, Jingfen;
Zhang, Yong;
Cai, Lun;
Zhao, Yi;
Sun, Shiwei;
Xu, Jingyi;
Bu, Dongbo;
Chen, Runsheng

Publication type:

Article

Topological structure analysis of the protein–protein interaction network in budding yeast.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 9, p. 2443

By:

Bu, Dongbo;
Zhao, Yi;
Cai, Lun;
Xue, Hong;
Zhu, Xiaopeng;
Lu, Hongchao;
Zhang, Jingfen;
Sun, Shiwei;
Ling, Lunjiang;
Zhang, Nan;
Li, Guojie;
Chen, Runsheng

Publication type:

Article

Fluid Evolution and Scheelite Precipitation Mechanism of the Large-Scale Shangfang Quartz-Vein-Type Tungsten Deposit, South China: Constraints from Rare Earth Element (REE) Behaviour during Fluid/Rock Interaction.

Published in:

Journal of Earth Science, 2020, v. 31, n. 4, p. 635, doi. 10.1007/s12583-020-1283-0

By:

Chen, Runsheng;
Zhu, Lüyun;
Jiang, Shao-Yong;
Ma, Ying;
Hu, Qinghai

Publication type:

Article

G Protein β3 Subunit Gene Variants and Essential Hypertension in the Northern Chinese Han Population.

Published in:

Annals of Human Genetics, 2005, v. 69, n. 4, p. 468, doi. 10.1111/j.1529-8817.2005.00172.x

By:

Biao Li;
Ge, Dongliang;
Yuelan Wang;
Weiyan Zhao;
Xiaoyang Zhou;
Dongfeng Gu;
Runsheng Chen

Publication type:

Article

Long noncoding RNA SMRG regulates Drosophila macrochaetes by antagonizing scute through E(spl)mβ.

Published in:

RNA Biology, 2019, v. 16, n. 1, p. 42, doi. 10.1080/15476286.2018.1556148

By:

Xu, Mengbo;
Xiang, Yuanhang;
Liu, Xiaojun;
Bai, Baoyan;
Chen, Runsheng;
Liu, Li;
Li, Meixia

Publication type:

Article

Expression in Escherichia coli, Purification and Characterization of Thermoanaerobacter tengcongensis Ribosome Recycling Factor.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 1, p. 89, doi. 10.1093/jb/mvi102

By:

Peng Guo;
Liqiang Zhang;
Zhen Qi;
Runsheng Chen;
Guozhong Jing

Publication type:

Article

Ore Genesis of the Lunwei Granite-Related Scheelite Deposit in the Wuyi Metallogenic Belt, Southeast China: Constraints from Geochronology, Fluid Inclusions, and H-O-S Isotopes.

Published in:

Resource Geology, 2016, v. 66, n. 3, p. 240, doi. 10.1111/rge.12100

By:

Wang, Hui;
Feng, Chengyou;
Zhao, Yiming;
Zhang, Mingyu;
Chen, Runsheng;
Chen, Jinliang

Publication type:

Article

Differential expression of miRNAs related to caste differentiation in the honey bee, Apis mellifera.

Published in:

Apidologie, 2016, v. 47, n. 4, p. 495, doi. 10.1007/s13592-015-0389-3

By:

Guo, Xiangqian;
Su, Songkun;
Geir, Skogerbø;
Li, Wenfeng;
Li, Zhiguo;
Zhang, Shaowu;
Chen, Shenglu;
Chen, Runsheng

Publication type:

Article

NMPP: a user-customized NimbleGen microarray data processing pipeline.

Published in:

Bioinformatics, 2006, v. 22, n. 23, p. 2955, doi. 10.1093/bioinformatics/btl525

By:

Wang, Xiangfeng;
He, Hang;
Li, Lei;
Chen, Runsheng;
Deng, Xing Wang;
Li, Songgang

Publication type:

Article

Conservation analysis of small RNA genes in Escherichia coli.

Published in:

Bioinformatics, 2004, v. 20, n. 5, p. 599, doi. 10.1093/bioinformatics/btg457

By:

Yong Zhang;
Zhihua Zhang;
Lunjiang Ling;
Baochen Shi;
Runsheng Chen

Publication type:

Article

Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines.

Published in:

SCIENCE CHINA Life Sciences, 2013, v. 56, n. 6, p. 503, doi. 10.1007/s11427-013-4485-1

By:

Zhao, GuoGuang;
Jiao, Fei;
Liao, Qi;
Luo, HaiTao;
Li, Hui;
Sun, Liang;
Bu, DeChao;
Yu, KunTao;
Zhao, Yi;
Chen, RunSheng

Publication type:

Article

Discovery of Plasma Membrane-Associated RNAs through APEX-seq.

Published in:

Cell Biochemistry & Biophysics, 2021, v. 79, n. 4, p. 905, doi. 10.1007/s12013-021-00991-0

By:

Wu, Erzhong;
Guo, Xuzhen;
Teng, Xueyi;
Zhang, Ruijin;
Li, Fahui;
Cui, Ya;
Zhang, Dongdong;
Liu, Qinghua;
Luo, Jianjun;
Wang, Jiangyun;
Chen, Runsheng

Publication type:

Article

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.

Published in:

Plant Cell, 2010, v. 22, n. 1, p. 17, doi. 10.1105/tpc.109.072041

By:

He, Guangming;
Zhu, Xiaopeng;
Elling, Axel A.;
Chen, Liangbi;
Wang, Xiangfeng;
Guo, Lan;
Liang, Manzhong;
He, Hang;
Zhang, Huiyong;
Chen, Fangfang;
Qi, Yijun;
Chen, Runsheng;
Deng, Xing-Wang

Publication type:

Article

LncRNA‐encoded microproteins: A new form of cargo in cell culture‐derived and circulating extracellular vesicles.

Published in:

Journal of Extracellular Vesicles, 2021, v. 10, n. 9, p. 1, doi. 10.1002/jev2.12123

By:

Cai, Tanxi;
Zhang, Qing;
Wu, Bowen;
Wang, Jifeng;
Li, Na;
Zhang, Tingting;
Wang, Zhipeng;
Luo, Jianjun;
Guo, Xiaojing;
Ding, Xiang;
Xie, Zhensheng;
Niu, Lili;
Ning, Weihai;
Fan, Zhen;
Chen, Xiaowei;
Guo, Xiangqian;
Chen, Runsheng;
Zhang, Hongwei;
Yang, Fuquan

Publication type:

Article

Conserved distances between vertebrate highly conserved elements.

Published in:

Human Molecular Genetics, 2006, v. 15, n. 19, p. 2911, doi. 10.1093/hmg/ddl232

By:

Sun, Hong;
Skogerbø, Geir;
Chen, Runsheng

Publication type:

Article

Distinct MicroRNA Subcellular Size and Expression Patterns in Human Cancer Cells.

Published in:

International Journal of Cell Biology, 2012, p. 1, doi. 10.1155/2012/672462

By:

Beibei Chen;
Bo Zhang;
Huaxia Luo;
Jiao Yuan;
Skogerbø, Geir;
Runsheng Chen

Publication type:

Article

LncRNA HAND2‐AS1 promotes liver cancer stem cell self‐renewal via BMP signaling.

Published in:

EMBO Journal, 2019, v. 38, n. 17, p. N.PAG, doi. 10.15252/embj.2018101110

By:

Wang, Yanying;
Zhu, Pingping;
Luo, Jianjun;
Wang, Jing;
Liu, Zhiwei;
Wu, Wei;
Du, Ying;
Ye, Buqing;
Wang, Dongpeng;
He, Lei;
Ren, Weizheng;
Wang, Jianyi;
Sun, Xianhui;
Chen, Runsheng;
Tian, Yong;
Fan, Zusen

Publication type:

Article

<italic>LncKdm2b</italic> controls self‐renewal of embryonic stem cells via activating expression of transcription factor <italic>Zbtb3</italic>.

Published in:

EMBO Journal, 2018, v. 37, n. 8, p. 1, doi. 10.15252/embj.201797174

By:

Ye, Buqing;
Liu, Benyu;
Yang, Liuliu;
Zhu, Xiaoxiao;
Zhang, Dongdong;
Wu, Wei;
Zhu, Pingping;
Wang, Yanying;
Wang, Shuo;
Xia, Pengyan;
Du, Ying;
Meng, Shu;
Huang, Guanling;
Wu, Jiayi;
Chen, Runsheng;
Tian, Yong;
Fan, Zusen

Publication type:

Article

A binary matrix factorization algorithm for protein complex prediction.

Published in:

Proteome Science, 2011, v. 9, n. Suppl 1, p. 1, doi. 10.1186/1477-5956-9-S1-S18

By:

Shikui Tu;
Runsheng Chen;
Lei Xu

Publication type:

Article

Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 5, p. e47, doi. 10.1371/journal.pcbi.0020047

By:

Zhihua Zhang;
Changning Liu;
Skogerbø, Geir;
Xiaopeng Zhu;
Hongchao Lu;
Lan Chen;
Baochen Shi;
Yong Zhang;
Jie Wang;
Tao Wu;
Runsheng Chen

Publication type:

Article

Construction and structural modeling of a single-chain Fv-asparaginase fusion protein resistant to proteolysis.

Published in:

Biotechnology & Bioengineering, 2000, v. 70, n. 4, p. 456, doi. 10.1002/1097-0290(20001120)70:4<456::AID-BIT11>3.0.CO;2-E

By:

Guo, Li;
Wang, Jinhua;
Qian, Shijun;
Yan, Xiyun;
Chen, Runsheng;
Meng, Guangzhen

Publication type:

Article

LncVar: a database of genetic variation associated with long non-coding genes.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 112, doi. 10.1093/bioinformatics/btw581

By:

Xiaowei Chen;
Yajing Hao;
Ya Cui;
Zhen Fan;
Shunmin He;
Jianjun Luo;
Runsheng Chen

Publication type:

Article

BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications.

Published in:

Bioinformatics, 2016, v. 32, n. 11, p. 1740, doi. 10.1093/bioinformatics/btw041

By:

Ya Cui;
Xiaowei Chen;
Huaxia Luo;
Zhen Fan;
Jianjun Luo;
Shunmin He;
Haiyan Yue;
Peng Zhang;
Runsheng Chen

Publication type:

Article

Computational identification of piRNA targets on mouse mRNAs.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1170, doi. 10.1093/bioinformatics/btv729

By:

Jiao Yuan;
Peng Zhang;
Ya Cui;
Jiajia Wang;
Skogerbø, Geir;
Da-Wei Huang;
Runsheng Chen;
Shunmin He

Publication type:

Article

FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.

Published in:

Bioinformatics, 2008, v. 24, n. 18, p. 1994, doi. 10.1093/bioinformatics/btn327

By:

Xiang Chen;
Si-Min He;
Dongbo Bu;
Fa Zhang;
Zhiyong Wang;
Runsheng Chen;
Wen Gao

Publication type:

Article

Noncoding RNA: from dark matter to bright star.

Published in:

2020

By:

Xue, Yuanchao;
Chen, Runsheng;
Qu, Lianghu;
Cao, Xiaofeng

Publication type:

Editorial

Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm

Published in:

FEBS Letters, 2006, v. 580, n. 7, p. 1891, doi. 10.1016/j.febslet.2006.02.053

By:

Sun, Shiwei;
Zhao, Yi;
Jiao, Yishan;
Yin, Yifei;
Cai, Lun;
Zhang, Yong;
Lu, Hongchao;
Chen, Runsheng;
Bu, Dongbo

Publication type:

Article

Analyzing and modeling the inhibitory effect of phosphatidic acid on the GTP-γ-S binding activity of Goα.

Published in:

Proteins, 2008, v. 71, n. 4, p. 1732, doi. 10.1002/prot.21826

By:

Qu, Liang;
Wan, Jia;
Cao, Yu;
Zhang, Yinghao;
Chen, Runsheng;
Huang, Youguo

Publication type:

Article

The influences of PRG-1 on the expression of small RNAs and mRNAs.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-321

By:

Jia-Jia Wang;
Dong-Ya Cui;
Tengfei Xiao;
Xubin Sun;
Peng Zhang;
Runsheng Chen;
Shunmin He;
Da-Wei Huang

Publication type:

Article