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Transcriptional immune suppression and up-regulation of double-stranded DNA damage and repair repertoires in ecDNA-containing tumors.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.88895
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- Publication type:
- Article
Annotation of nuclear lncRNAs based on chromatin interactions.
- Published in:
- PLoS ONE, 2024, v. 19, n. 5, p. 1, doi. 10.1371/journal.pone.0295971
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- Publication type:
- Article
Chromatin activity identifies differential gene regulation across human ancestries.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03165-2
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- Publication type:
- Article
Charge-altering releasable transporters enhance mRNA delivery in vitro and exhibit in vivo tropism.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42672-x
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- Publication type:
- Article
Whole genome deconvolution unveils Alzheimer's resilient epigenetic signature.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40611-4
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- Publication type:
- Article
The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38106-3
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- Publication type:
- Article
Engineering circular RNA for enhanced protein production.
- Published in:
- Nature Biotechnology, 2023, v. 41, n. 2, p. 262, doi. 10.1038/s41587-022-01393-0
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- Publication type:
- Article
Author Correction: Engineering circular RNA for enhanced protein production.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Inducible lncRNA transgenic mice reveal continual role of HOTAIR in promoting breast cancer metastasis.
- Published in:
- eLife, 2023, p. 1, doi. 10.7554/eLife.79126
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- Publication type:
- Article
The autism risk factor CHD8 is a chromatin activator in human neurons and functionally dependent on the ERK-MAPK pathway effector ELK1.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-23614-x
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- Publication type:
- Article
KLF4 recruits SWI/SNF to increase chromatin accessibility and reprogram the endothelial enhancer landscape under laminar shear stress.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32566-9
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- Publication type:
- Article
RNA-binding proteins direct myogenic cell fate decisions.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.75844
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- Publication type:
- Article
Genetic Bottleneck of Mitochondrial DNA During Human Lymphocyte Development.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 5, p. 1, doi. 10.1093/molbev/msac090
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- Publication type:
- Article
PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments.
- Published in:
- NAR Genomics & Bioinformatics, 2021, v. 3, n. 4, p. 1, doi. 10.1093/nargab/lqab101
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- Publication type:
- Article
Chromatin accessibility associates with protein-RNA correlation in human cancer.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25872-1
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- Publication type:
- Article
Locus specific epigenetic modalities of random allelic expression imbalance.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25630-3
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- Publication type:
- Article
Profiling chromatin accessibility responses in human neutrophils with sensitive pathogen detection.
- Published in:
- Life Science Alliance, 2021, v. 4, n. 8, p. 1, doi. 10.26508/lsa.202000976
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- Publication type:
- Article
Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-19702-z
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- Publication type:
- Article
Author Correction: Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.
- Published in:
- 2020
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- Publication type:
- Correction Notice
Structural modularity of the XIST ribonucleoprotein complex.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-20040-3
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- Publication type:
- Article
Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19702-z
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- Publication type:
- Article
Fitness effects of CRISPR/Cas9-targeting of long noncoding RNA genes.
- Published in:
- 2020
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- Publication type:
- Letter
Acetate supplementation restores chromatin accessibility and promotes tumor cell differentiation under hypoxia.
- Published in:
- Cell Death & Disease, 2020, v. 11, n. 2, p. 1, doi. 10.1038/s41419-020-2303-9
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- Publication type:
- Article
PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1880-3
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- Publication type:
- Article
Functional significance of U2AF1 S34F mutations in lung adenocarcinomas.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13392-y
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- Publication type:
- Article
Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.
- Published in:
- Nature Biotechnology, 2019, v. 37, n. 12, p. 1458, doi. 10.1038/s41587-019-0332-7
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- Publication type:
- Article
The role of Xist‐mediated Polycomb recruitment in the initiation of X‐chromosome inactivation.
- Published in:
- EMBO Reports, 2019, v. 20, n. 10, p. N.PAG, doi. 10.15252/embr.201948019
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- Publication type:
- Article
Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-11118-8
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- Publication type:
- Article
Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons.
- Published in:
- eLife, 2019, p. 1, doi. 10.7554/eLife.40197
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- Publication type:
- Article
Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07115-y
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- Publication type:
- Article
Challenges and recommendations for epigenomics in precision health.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 12, p. 1128, doi. 10.1038/nbt.4030
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- Publication type:
- Article
Preleukemic Hematopoietic Stem Cells in Human Acute Myeloid Leukemia.
- Published in:
- Frontiers in Oncology, 2017, p. 1, doi. 10.3389/fonc.2017.00263
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- Publication type:
- Article
The conserved RNA helicase YTHDC2 regulates the transition from proliferation to differentiation in the germline.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.26116
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- Publication type:
- Article
Two-Stage Explantation of a Magnetic Lower Esophageal Sphincter Augmentation Device Due to Esophageal Erosion.
- Published in:
- 2017
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- Publication type:
- journal article
Transcription coactivator and lncRNA duet evoke Hox genes.
- Published in:
- PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006797
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- Publication type:
- Article
Single-cell epigenomic variability reveals functional cancer heterogeneity.
- Published in:
- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-016-1133-7
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- Publication type:
- Article
Comment on "Hotair Is Dispensable for Mouse Development".
- Published in:
- PLoS Genetics, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pgen.1006406
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- Publication type:
- Article
Novel Gene Expression Profile of Women with Intrinsic Skin Youthfulness by Whole Transcriptome Sequencing.
- Published in:
- PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0165913
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- Publication type:
- Article
Single-cell profiling of lncRNAs in the developing human brain.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0933-0
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- Publication type:
- Article
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE.
- Published in:
- Nature Protocols, 2016, v. 11, n. 2, p. 273, doi. 10.1038/nprot.2016.011
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- Publication type:
- Article
A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63.
- Published in:
- Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0840-9
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- Publication type:
- Article
LncRNA-HIT Functions as an Epigenetic Regulator of Chondrogenesis through Its Recruitment of p100/CBP Complexes.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005680
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- Publication type:
- Article
Erratum: Structural imprints in vivo decode RNA regulatory mechanisms.
- Published in:
- 2015
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- Publication type:
- Correction Notice
Single-cell chromatin accessibility reveals principles of regulatory variation.
- Published in:
- Nature, 2015, v. 523, n. 7561, p. 486, doi. 10.1038/nature14590
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- Publication type:
- Article
Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells.
- Published in:
- Nature, 2015, v. 522, n. 7555, p. 221, doi. 10.1038/nature14308
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- Publication type:
- Article
Montagna Symposium 2014-Skin Aging: Molecular Mechanisms and Tissue Consequences.
- Published in:
- Journal of Investigative Dermatology, 2015, v. 135, n. 4, p. 950, doi. 10.1038/jid.2014.546
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- Publication type:
- Article
Structural imprints in vivo decode RNA regulatory mechanisms.
- Published in:
- Nature, 2015, v. 519, n. 7544, p. 486, doi. 10.1038/nature14263
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- Publication type:
- Article
Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 3, p. 1859, doi. 10.1093/nar/gkv010
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- Publication type:
- Article
RNA helicase DDX21 coordinates transcription and ribosomal RNA processing.
- Published in:
- Nature, 2015, v. 518, n. 7538, p. 249, doi. 10.1038/nature13923
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- Publication type:
- Article
Genomics: CRISPR engineering turns on genes.
- Published in:
- Nature, 2015, v. 517, n. 7536, p. 560, doi. 10.1038/517560a
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- Publication type:
- Article