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Genome and network visualization facilitates the analyses of the effects of drugs and mutations on protein-protein and drug-protein networks.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 215, doi. 10.1186/s12859-016-0908-x
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- Article
LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0935-7
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- Publication type:
- Article
3did: a catalog of domain-based interactions of known three-dimensional structure.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D374, doi. 10.1093/nar/gkt887
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- Article
NetAligner—a network alignment server to compare complexes, pathways and whole interactomes.
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- Nucleic Acids Research, 2012, v. 40, p. W157, doi. 10.1093/nar/gks446
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- Publication type:
- Article
3did: identification and classification of domain-based interactions of known three-dimensional structure.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D718, doi. 10.1093/nar/gkq962
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- Article
MINT, the molecular interaction database: 2009 update.
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- Nucleic Acids Research, 2010, v. 38, p. D532, doi. 10.1093/nar/gkp983
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- Article
VirusMINT: a viral protein interaction database.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D669, doi. 10.1093/nar/gkn739
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- Article
DOMINO: a database of domain–peptide interactions.
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- Nucleic Acids Research, 2007, v. 35, p. d557, doi. 10.1093/nar/gkl961
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- Article
MINT: the Molecular INTeraction database.
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- Nucleic Acids Research, 2007, v. 35, p. d572, doi. 10.1093/nar/gkl950
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- Article
The binary protein-protein interaction landscape of Escherichia coli.
- Published in:
- Nature Biotechnology, 2014, v. 32, n. 3, p. 285, doi. 10.1038/nbt.2831
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- Article
The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.
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- Nature Biotechnology, 2010, v. 28, n. 9, p. 897, doi. 10.1038/nbt0910-897
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- Article
The minimum information required for reporting a molecular interaction experiment (MIMIx).
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- Nature Biotechnology, 2007, v. 25, n. 8, p. 894, doi. 10.1038/nbt1324
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- Article
The HUPO PSI's Molecular Interaction format-a community standard for the representation of protein interaction data.
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- Nature Biotechnology, 2004, v. 22, n. 2, p. 177, doi. 10.1038/nbt926
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- Article
dSysMap: exploring the edgetic role of disease mutations.
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- Nature Methods, 2015, v. 12, n. 3, p. 167, doi. 10.1038/nmeth.3289
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- Article
Interactome3D: adding structural details to protein networks.
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- Nature Methods, 2013, v. 10, n. 1, p. 47, doi. 10.1038/nmeth.2289
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- Article
PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
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- 2011
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- Letter to the Editor
Recurated protein interaction datasets.
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- 2009
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- Publication type:
- Letter
TMBleR: a bioinformatic tool to optimize TMB estimation and predictive power.
- Published in:
- Bioinformatics, 2022, v. 38, n. 6, p. 1724, doi. 10.1093/bioinformatics/btab836
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- Publication type:
- Article
Submit Your Interaction Data the IMEx Way.
- Published in:
- Proteomics, 2007, v. 7, n. S1, p. 28, doi. 10.1002/pmic.200700286
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- Article
Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions.
- Published in:
- Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00075
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- Article
SMITH: a LIMS for handling next-generation sequencing workflows.
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- BMC Bioinformatics, 2014, v. 15, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-15-S14-S3
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- Publication type:
- Article
AnnotateGenomicRegions: a web application.
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- BMC Bioinformatics, 2014, v. 15, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-15-S1-S8
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- Publication type:
- Article
HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.
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- BMC Bioinformatics, 2005, v. 6, p. S21, doi. 10.1186/1471-2105-6-S4-S21
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- Article
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes.
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- BMC Bioinformatics, 2019, v. 20, n. 4, p. 1, doi. 10.1186/s12859-019-2681-0
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- Article
Broadening the horizon -- level 2.5 of the HUPO-PSI format for molecular interactions.
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- BMC Biology, 2007, v. 5, p. 44, doi. 10.1186/1741-7007-5-44
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- Article
The EHEC-host interactome reveals novel targets for the translocated intimin receptor.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep07531
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- Article
Linking entries in protein interaction database to structured text: The FEBS Letters experiment
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- FEBS Letters, 2008, v. 582, n. 8, p. 1171, doi. 10.1016/j.febslet.2008.02.071
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- Article
Comparative interactomics
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- FEBS Letters, 2005, v. 579, n. 8, p. 1828, doi. 10.1016/j.febslet.2005.01.064
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- Article
The MI bundle: enabling network and structural biology in genome visualization tools.
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- Bioinformatics, 2015, v. 31, n. 22, p. 3679, doi. 10.1093/bioinformatics/btv431
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- Publication type:
- Article
Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03781-2
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- Article