Works by Cavanagh, Colin A.

Results: 28

Recombination and structural variation in a large 8-founder wheat MAGIC population Open Access.

Published in:

G3: Genes | Genomes | Genetics, 2025, v. 15, n. 4, p. 1, doi. 10.1093/g3journal/jkaf037

By:

Shah, Rohan;
Huang, B Emma;
Whan, Alex;
Fradgley, Nick S;
Newberry, Marcus;
Verbyla, Klara;
Morell, Matthew K;
Cavanagh, Colin R

Publication type:

Article

Mapping Quantitative Trait Loci (QTL) in sheep. III. QTL for carcass composition traits derived from CT scans and aligned with a meta-assembly for sheep and cattle carcass QTL.

Published in:

Genetics Selection Evolution, 2010, v. 42, n. 9, p. 1, doi. 10.1186/1297-9686-42-36

By:

Cavanagh, Colin R.;
Jonas, Elisabeth;
Hobbs, Matthew;
Thomson, Peter C.;
Tammen, Imke;
Raadsma, Herman W.

Publication type:

Article

TEOSINTE BRANCHED1 Regulates Inflorescence Architecture and Development in Bread Wheat (Triticum aestivum).

Published in:

Plant Cell, 2018, v. 30, n. 3, p. 563, doi. 10.1105/tpc.17.00961

By:

Dixon, Laura E.;
Greenwood, Julian R.;
Bencivenga, Stefano;
Zhang, Peng;
Cockram, James;
Mellers, Gregory;
Ramm, Kerrie;
Cavanagh, Colin;
Swain, Steve M.;
Boden, Scott A.

Publication type:

Article

Variable Selection in Linear Mixed Models Using an Extended Class of Penalties.

Published in:

Australian & New Zealand Journal of Statistics, 2012, v. 54, n. 4, p. 427, doi. 10.1111/j.1467-842X.2012.00687.x

By:

Taylor, Julian D.;
Verbyla, Arūnas P.;
Cavanagh, Colin;
Newberry, Marcus

Publication type:

Article

The genetics of rhizosheath size in a multiparent mapping population of wheat.

Published in:

Journal of Experimental Botany, 2015, v. 66, n. 15, p. 4527, doi. 10.1093/jxb/erv223

By:

Delhaize, Emmanuel;
Rathjen, Tina M.;
Cavanagh, Colin R.

Publication type:

Article

Genome-wide association mapping in plants.

Published in:

Theoretical & Applied Genetics, 2015, v. 128, n. 6, p. 1163, doi. 10.1007/s00122-015-2497-x

By:

George, Andrew;
Cavanagh, Colin

Publication type:

Article

MAGIC populations in crops: current status and future prospects.

Published in:

Theoretical & Applied Genetics, 2015, v. 128, n. 6, p. 999, doi. 10.1007/s00122-015-2506-0

By:

Huang, B.;
Verbyla, Klara;
Verbyla, Arunas;
Raghavan, Chitra;
Singh, Vikas;
Gaur, Pooran;
Leung, Hei;
Varshney, Rajeev;
Cavanagh, Colin

Publication type:

Article

Computationally efficient map construction in the presence of segregation distortion.

Published in:

Theoretical & Applied Genetics, 2014, v. 127, n. 12, p. 2585, doi. 10.1007/s00122-014-2401-0

By:

Shah, Rohan;
Cavanagh, Colin;
Huang, B.

Publication type:

Article

Whole-genome QTL analysis for MAGIC.

Published in:

Theoretical & Applied Genetics, 2014, v. 127, n. 8, p. 1753, doi. 10.1007/s00122-014-2337-4

By:

Verbyla, Arūnas;
George, Andrew;
Cavanagh, Colin;
Verbyla, Klara

Publication type:

Article

Selecting subsets of genotyped experimental populations for phenotyping to maximize genetic diversity.

Published in:

Theoretical & Applied Genetics, 2013, v. 126, n. 2, p. 379, doi. 10.1007/s00122-012-1986-4

By:

Emma Huang, B.;
Clifford, David;
Cavanagh, Colin

Publication type:

Article

Sponge and dough bread making: genetic and phenotypic relationships with wheat quality traits.

Published in:

Theoretical & Applied Genetics, 2010, v. 121, n. 5, p. 815, doi. 10.1007/s00122-010-1352-3

By:

Cavanagh, Colin;
Taylor, Julian;
Larroque, Oscar;
Coombes, Neil;
Verbyla, Arunas;
Nath, Zena;
Kutty, Ibrahim;
Rampling, Lynette;
Butow, Barbara;
Ral, Jean-Philippe;
Tomoskozi, Sandor;
Balazs, Gabor;
Békés, Ferenc;
Mann, Gulay;
Quail, Ken;
Southan, Michael;
Morell, Matthew;
Newberry, Marcus

Publication type:

Article

A genetic strategy generating wheat with very hig hamylose content.

Published in:

Plant Biotechnology Journal, 2015, v. 13, n. 9, p. 1276, doi. 10.1111/pbi.12345

By:

Regina, Ahmed;
Berbezy, Pierre;
Kosar‐Hashemi, Behjat;
Li, Suzhi;
Cmiel, Mark;
Larroque, Oscar;
Bird, Anthony R.;
Swain, Steve M.;
Cavanagh, Colin;
Jobling, Stephen A.;
Li, Zhongyi;
Morell, Matthew

Publication type:

Article

Use of a large multiparent wheat mapping population in genomic dissection of coleoptile and seedling growth.

Published in:

Plant Biotechnology Journal, 2014, v. 12, n. 2, p. 219, doi. 10.1111/pbi.12130

By:

Rebetzke, Greg J.;
Verbyla, Arunas P.;
Verbyla, Klara L.;
Morell, Matthew K.;
Cavanagh, Colin R.

Publication type:

Article

Down-regulation of glucan, water-dikinase activity in wheat endosperm increases vegetative biomass and yield.

Published in:

Plant Biotechnology Journal, 2013, v. 11, n. 3, p. 390, doi. 10.1111/pbi.12046

By:

Ral, Jean‐Philippe;
Bowerman, Andrew F.;
Li, Zhongyi;
Sirault, Xavier;
Furbank, Robert;
Pritchard, Jenifer R.;
Bloemsma, Marianne;
Cavanagh, Colin R.;
Howitt, Crispin A.;
Morell, Matthew K

Publication type:

Article

A multiparent advanced generation inter-cross population for genetic analysis in wheat.

Published in:

Plant Biotechnology Journal, 2012, v. 10, n. 7, p. 826, doi. 10.1111/j.1467-7652.2012.00702.x

By:

Huang, Bevan E.;
George, Andrew W.;
Forrest, Kerrie L.;
Kilian, Andrzej;
Hayden, Matthew J.;
Morell, Matthew K.;
Cavanagh, Colin R.

Publication type:

Article

Down-regulation of Glucan, Water-Dikinase activity in wheat endosperm increases vegetative biomass and yield.

Published in:

Plant Biotechnology Journal, 2012, v. 10, n. 7, p. 871, doi. 10.1111/j.1467-7652.2012.00711.x

By:

Ral, Jean‐Philippe;
Bowerman, Andrew F.;
Li, Zhongyi;
Sirault, Xavier;
Furbank, Robert;
Pritchard, Jenifer R.;
Bloemsma, Marianne;
Cavanagh, Colin R.;
Howitt, Crispin A.;
Morell, Matthew K.

Publication type:

Article

Bread matters: a national initiative to profile the genetic diversity of Australian wheat.

Published in:

Plant Biotechnology Journal, 2012, v. 10, n. 6, p. 703, doi. 10.1111/j.1467-7652.2012.00717.x

By:

Edwards, David;
Wilcox, Stephen;
Barrero, Roberto A.;
Fleury, Delphine;
Cavanagh, Colin R.;
Forrest, Kerrie L.;
Hayden, Matthew J.;
Moolhuijzen, Paula;
Keeble‐Gagnère, Gabriel;
Bellgard, Matthew I.;
Lorenc, Michał T.;
Shang, Catherine A.;
Baumann, Ute;
Taylor, Jennifer M.;
Morell, Matthew K.;
Langridge, Peter;
Appels, Rudi;
Fitzgerald, Anna

Publication type:

Article

Transcriptome and Allele Specificity Associated with a 3BL Locus for Fusarium Crown Rot Resistance in Bread Wheat.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0113309

By:

Ma, Jian;
Stiller, Jiri;
Zhao, Qiang;
Feng, Qi;
Cavanagh, Colin;
Wang, Penghao;
Gardiner, Donald;
Choulet, Frédéric;
Feuillet, Catherine;
Zheng, You-Liang;
Wei, Yuming;
Yan, Guijun;
Han, Bin;
Manners, John M.;
Liu, Chunji

Publication type:

Article

Characterizing Uncertainty in High-Density Maps from Multiparental Populations.

Published in:

Genetics, 2014, v. 198, n. 1, p. 117, doi. 10.1534/genetics.114.167577

By:

Ahfock, Daniel;
Wood, Ian;
Stephen, Stuart;
Cavanagh, Colin R.;
Huang, B. Emma

Publication type:

Article

Zebularine treatment is associated with deletion of FT-B1 leading to an increase in spikelet number in bread wheat.

Published in:

Plant, Cell & Environment, 2018, v. 41, n. 6, p. 1346, doi. 10.1111/pce.13164

By:

Finnegan, E. Jean;
Ford, Brett;
Wallace, Xiaomei;
Pettolino, Filomena;
Griffin, Patrick T.;
Schmitz, Robert J.;
Zhang, Peng;
Barrero, Jose M.;
Hayden, Matthew J.;
Boden, Scott A.;
Cavanagh, Colin A.;
Swain, Steve M.;
Trevaskis, Ben

Publication type:

Article

Ppd-1 is a key regulator of inflorescence architecture and paired spikelet development in wheat.

Published in:

NPJ Primary Care Respiratory Medicine, 2015, p. 14016, doi. 10.1038/nplants.2014.16

By:

Boden, Scott A.;
Cavanagh, Colin;
Cullis, Brian R.;
Ramm, Kerrie;
Greenwood, Julian;
Jean Finnegan, E.;
Trevaskis, Ben;
Swain, Steve M.

Publication type:

Article

Increased accuracy of starch granule type quantification using mixture distributions.

Published in:

Plant Methods, 2017, v. 13, p. 1, doi. 10.1186/s13007-017-0259-2

By:

Tanaka, Emi;
Ral, Jean-Phillippe F.;
Li, Sean;
Gaire, Raj;
Cavanagh, Colin R.;
Cullis, Brian R.;
Whan, Alex

Publication type:

Article

GrainScan: a low cost, fast method for grain size and colour measurements.

Published in:

Plant Methods, 2014, v. 10, n. 1, p. 1, doi. 10.1186/1746-4811-10-23

By:

Whan, Alex P.;
Smith, Alison B.;
Cavanagh, Colin R.;
Ral, Jean-Philippe F.;
Shaw, Lindsay M.;
Howitt, Crispin A.;
Bischof, Leanne

Publication type:

Article

Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1475-4

By:

Keeble-Gagnère, Gabriel;
Rigault, Philippe;
Tibbits, Josquin;
Pasam, Raj;
Hayden, Matthew;
Forrest, Kerrie;
Frenkel, Zeev;
Korol, Abraham;
Huang, B. Emma;
Cavanagh, Colin;
Taylor, Jen;
Abrouk, Michael;
Sharpe, Andrew;
Konkin, David;
Sourdille, Pierre;
Darrier, Benoît;
Choulet, Frédéric;
Bernard, Aurélien;
Rochfort, Simone;
Dimech, Adam

Publication type:

Article

Alternative splicing, activation of cryptic exons and amino acid substitutions in carotenoid biosynthetic genes are associated with lutein accumulation in wheat endosperm.

Published in:

Functional & Integrative Genomics, 2009, v. 9, n. 3, p. 363, doi. 10.1007/s10142-009-0121-3

By:

Howitt, Crispin A.;
Cavanagh, Colin R.;
Bowerman, Andrew F.;
Cazzonelli, Christopher;
Rampling, Lynette;
Mimica, Joanna L.;
Pogson, Barry J.

Publication type:

Article

Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0665-6

By:

Barrero, Jose M.;
Cavanagh, Colin;
Verbyla, Klara L.;
Tibbits, Josquin F. G.;
Verbyla, Arunas P.;
Huang, B. Emma;
Rosewarne, Garry M.;
Stephen, Stuart;
Wang, Penghao;
Whan, Alex;
Rigault, Philippe;
Hayden, Matthew J.;
Gubler, Frank

Publication type:

Article

iDArTs: increasing the value of genomic resources at no cost.

Published in:

Molecular Breeding, 2012, v. 30, n. 2, p. 927, doi. 10.1007/s11032-011-9676-5

By:

Emma Huang, B.;
Cavanagh, Colin;
Rampling, Lynette;
Kilian, Andrzej;
George, Andrew

Publication type:

Article

Overexpression of the WAPO-A1 gene increases the number of spikelets per spike in bread wheat.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18614-w

By:

Wittern, Lukas M.;
Barrero, Jose M.;
Bovill, William D.;
Verbyla, Klara L.;
Hughes, Trijntje;
Swain, Steve M.;
Steed, Gareth;
Webb, Alex A. R.;
Gardner, Keith;
Greenland, Andy;
Jacobs, John;
Frohberg, Claus;
Schmidt, Ralf-Christian;
Cavanagh, Colin;
Rohde, Antje;
Davey, Mark W.;
Hannah, Matthew A.

Publication type:

Article