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Genomic analysis supports Cape Lion population connectivity prior to colonial eradication and extinction.
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- Journal of Heredity, 2024, v. 115, n. 2, p. 155, doi. 10.1093/jhered/esad081
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- Article
On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity.
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- Molecular Ecology Resources, 2023, v. 23, n. 6, p. 1299, doi. 10.1111/1755-0998.13800
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- Publication type:
- Article
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus —The Closest Ancestral Proxy of Antarctic Cryonotothenioids.
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- Genes, 2023, v. 14, n. 6, p. 1196, doi. 10.3390/genes14061196
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- Article
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-34237-1
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- Publication type:
- Article
Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera.
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- Journal of Heredity, 2023, v. 114, n. 2, p. 120, doi. 10.1093/jhered/esac065
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- Article
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish.
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- Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad029
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- Publication type:
- Article
The genomic basis of the plant island syndrome in Darwin's giant daisies.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31280-w
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- Article
Evaluating the genome-wide impacts of species translocations: the greater prairie-chicken as a case study.
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- Conservation Genetics, 2022, v. 23, n. 1, p. 179, doi. 10.1007/s10592-021-01412-8
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- Publication type:
- Article
Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei).
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- Journal of Heredity, 2021, v. 112, n. 4, p. 357, doi. 10.1093/jhered/esab017
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- Publication type:
- Article
Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms.
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- Methods in Ecology & Evolution, 2021, v. 12, n. 5, p. 805, doi. 10.1111/2041-210X.13562
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- Article
Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data.
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- Molecular Ecology Resources, 2021, v. 21, n. 2, p. 363, doi. 10.1111/1755-0998.13163
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- Publication type:
- Article
Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.10896
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- Publication type:
- Article
Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 11, p. 4115, doi. 10.1534/g3.120.401485
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- Publication type:
- Article
Genomic Resources for Darters (Percidae: Etheostominae) Provide Insight into Postzygotic Barriers Implicated in Speciation.
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- Molecular Biology & Evolution, 2020, v. 37, n. 3, p. 711, doi. 10.1093/molbev/msz260
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- Publication type:
- Article
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics.
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- Molecular Ecology, 2019, v. 28, n. 21, p. 4737, doi. 10.1111/mec.15253
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- Article
Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes.
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- Genetics, 2019, v. 212, n. 4, p. 1367, doi. 10.1534/genetics.119.302261
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- Publication type:
- Article
Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles.
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- Ecology & Evolution (20457758), 2018, v. 8, n. 18, p. 9282, doi. 10.1002/ece3.4434
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- Publication type:
- Article
Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback.
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- Genetics, 2018, v. 209, n. 3, p. 921, doi. 10.1534/genetics.117.300610
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- Publication type:
- Article
Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
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- PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0192165
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- Article
When structure leads to sex: Untangling signals in population genetic data sets.
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- Molecular Ecology, 2017, v. 26, n. 24, p. 6763, doi. 10.1111/mec.14422
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- Publication type:
- Article
The Novel Evolution of the Sperm Whale Genome.
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- Genome Biology & Evolution, 2017, v. 9, n. 12, p. 3260, doi. 10.1093/gbe/evx187
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- Publication type:
- Article
Ancient three-spined stickleback (Gasterosteus aculeatus) mtDNA lineages are not associated with phenotypic or nuclear genetic variation.
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- Biological Journal of the Linnean Society, 2017, v. 122, n. 3, p. 579, doi. 10.1093/biolinnean/blx080
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- Article
Male and female contributions to behavioral isolation in darters as a function of genetic distance and color distance.
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- Evolution, 2017, v. 71, n. 10, p. 2428, doi. 10.1111/evo.13321
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- Article
Lost in parameter space: a road map for stacks.
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- Methods in Ecology & Evolution, 2017, v. 8, n. 10, p. 1360, doi. 10.1111/2041-210X.12775
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- Article
Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations.
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- Molecular Ecology Resources, 2017, v. 17, n. 3, p. 362, doi. 10.1111/1755-0998.12669
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- Publication type:
- Article
RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data.
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- Molecular Ecology Resources, 2016, v. 16, n. 5, p. 1264, doi. 10.1111/1755-0998.12566
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- Publication type:
- Article
A RAD-Tag Genetic Map for the Platyfish (Xiphophorus maculatus) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish.
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- Genetics, 2014, v. 197, n. 2, p. 625, doi. 10.1534/genetics.114.164293
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- Publication type:
- Article
Replicate Phylogenies and Post-Glacial Range Expansion of the Pitcher-Plant Mosquito, <i>Wyeomyia smithii</i>, in North America.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0072262
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- Article
Retinoic Acid Metabolic Genes, Meiosis, and Gonadal Sex Differentiation in Zebrafish.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0073951
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- Article
Comparative Oncogenomic Analysis of Copy Number Alterations in Human and Zebrafish Tumors Enables Cancer Driver Discovery.
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- PLoS Genetics, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pgen.1003734
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- Publication type:
- Article
The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.
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- Molecular Ecology, 2013, v. 22, n. 11, p. 2864, doi. 10.1111/mec.12330
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- Publication type:
- Article
Stacks: an analysis tool set for population genomics.
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- Molecular Ecology, 2013, v. 22, n. 11, p. 3124, doi. 10.1111/mec.12354
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- Article
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.
- Published in:
- Nature Genetics, 2013, v. 45, n. 5, p. 567, doi. 10.1038/ng.2604
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- Article
Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication.
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- Genetics, 2011, v. 188, n. 4, p. 799, doi. 10.1534/genetics.111.127324
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- Article
Genome-wide genetic marker discovery and genotyping using next-generation sequencing.
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- 2011
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- Publication type:
- journal article
Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout.
- Published in:
- Molecular Ecology Resources, 2011, v. 11, p. 117, doi. 10.1111/j.1755-0998.2010.02967.x
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- Publication type:
- Article
Evolution of Developmental Regulation in the Vertebrate FgfD Subfamily.
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- Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2010, v. 314B, n. 1, p. 33, doi. 10.1002/jez.b.21307
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- Publication type:
- Article
Consequences of Lineage-Specific Gene Loss on Functional Evolution of Surviving Paralogs: ALDH1A and Retinoic Acid Signaling in Vertebrate Genomes.
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- PLoS Genetics, 2009, v. 5, n. 5, p. 1
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- Publication type:
- Article
Evolution of a New Function by Degenerative Mutation in Cephalochordate Steroid Receptors.
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- PLoS Genetics, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.pgen.1000191
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- Article