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The rise of diversity in metabolic platforms across the Candidate Phyla Radiation.
Published in:
BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00804-5
By:
- Jaffe, Alexander L.;
- Castelle, Cindy J.;
- Matheus Carnevali, Paula B.;
- Gribaldo, Simonetta;
- Banfield, Jillian F.
Publication type:
Article
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.
Published in:
eLife, 2015, p. 1, doi. 10.7554/eLife.05477
By:
- Raveh-Sadka, Tali;
- Thomas, Brian C.;
- Singh, Andrea;
- Brooks, Brandon;
- Castelle, Cindy J.;
- Sharon, Itai;
- Banfield, Jillian F.;
- Firek, Brian;
- Morowitz, Michael J.;
- Baker, Robyn;
- Good, Misty
Publication type:
Article
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1452, doi. 10.1038/ismej.2013.249
By:
- Wrighton, Kelly C;
- Castelle, Cindy J;
- Wilkins, Michael J;
- Hug, Laura A;
- Sharon, Itai;
- Thomas, Brian C;
- Handley, Kim M;
- Mullin, Sean W;
- Nicora, Carrie D;
- Singh, Andrea;
- Lipton, Mary S;
- Long, Philip E;
- Williams, Kenneth H;
- Banfield, Jillian F
Publication type:
Article
Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups.
Published in:
BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01348-6
By:
- Méheust, Raphaël;
- Castelle, Cindy J.;
- Jaffe, Alexander L.;
- Banfield, Jillian F.
Publication type:
Article
Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.
Published in:
Scientific Reports, 2017, p. 40101, doi. 10.1038/srep40101
By:
- Castelle, Cindy J.;
- Brown, Christopher T.;
- Thomas, Brian C.;
- Williams, Kenneth H.;
- Banfield, Jillian F.
Publication type:
Article
Spectroscopic Characterization of a Green Copper Site in a Single-Domain Cupredoxin.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098941
By:
- Roger, Magali;
- Biaso, Frédéric;
- Castelle, Cindy J.;
- Bauzan, Marielle;
- Chaspoul, Florence;
- Lojou, Elisabeth;
- Sciara, Giuliano;
- Caffarri, Stefano;
- Giudici-Orticoni, Marie-Thérèse;
- Ilbert, Marianne
Publication type:
Article
The distinction of CPR bacteria from other bacteria based on protein family content.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12171-z
By:
- Méheust, Raphaël;
- Burstein, David;
- Castelle, Cindy J.;
- Banfield, Jillian F.
Publication type:
Article
Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.
Published in:
2019
By:
- Matheus Carnevali, Paula B.;
- Schulz, Frederik;
- Castelle, Cindy J.;
- Kantor, Rose S.;
- Shih, Patrick M.;
- Sharon, Itai;
- Santini, Joanne M.;
- Olm, Matthew R.;
- Amano, Yuki;
- Thomas, Brian C.;
- Anantharaman, Karthik;
- Burstein, David;
- Becraft, Eric D.;
- Stepanauskas, Ramunas;
- Woyke, Tanja;
- Banfield, Jillian F.
Publication type:
Correction Notice
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08246-y
By:
- Matheus Carnevali, Paula B.;
- Schulz, Frederik;
- Castelle, Cindy J.;
- Kantor, Rose S.;
- Shih, Patrick M.;
- Sharon, Itai;
- Santini, Joanne M.;
- Olm, Matthew R.;
- Amano, Yuki;
- Thomas, Brian C.;
- Anantharaman, Karthik;
- Burstein, David;
- Becraft, Eric D.;
- Stepanauskas, Ramunas;
- Woyke, Tanja;
- Banfield, Jillian F.
Publication type:
Article
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea.
Published in:
Molecular Biology & Evolution, 2019, v. 36, n. 3, p. 435, doi. 10.1093/molbev/msy234
By:
- Jaffe, Alexander L;
- Castelle, Cindy J;
- Dupont, Christopher L;
- Banfield, Jillian F
Publication type:
Article
Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin.
Published in:
Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-022-01416-7
By:
- Jaffe, Alexander L.;
- Bardot, Corinne;
- Le Jeune, Anne-Hélène;
- Liu, Jett;
- Colombet, Jonathan;
- Perrière, Fanny;
- Billard, Hermine;
- Castelle, Cindy J.;
- Lehours, Anne-Catherine;
- Banfield, Jillian F.
Publication type:
Article
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO<sub>2</sub> concentrations.
Published in:
Environmental Microbiology, 2017, v. 19, n. 2, p. 459, doi. 10.1111/1462-2920.13362
By:
- Probst, Alexander J.;
- Castelle, Cindy J.;
- Singh, Andrea;
- Brown, Christopher T.;
- Anantharaman, Karthik;
- Sharon, Itai;
- Hug, Laura A.;
- Burstein, David;
- Emerson, Joanne B.;
- Thomas, Brian C.;
- Banfield, Jillian F.
Publication type:
Article
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.
Published in:
Nature Communications, 2016, v. 7, n. 10, p. 13219, doi. 10.1038/ncomms13219
By:
- Anantharaman, Karthik;
- Brown, Christopher T.;
- Hug, Laura A.;
- Sharon, Itai;
- Castelle, Cindy J.;
- Probst, Alexander J.;
- Thomas, Brian C.;
- Singh, Andrea;
- Wilkins, Michael J.;
- Karaoz, Ulas;
- Brodie, Eoin L.;
- Williams, Kenneth H.;
- Hubbard, Susan S.;
- Banfield, Jillian F.
Publication type:
Article
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.
Published in:
Nature Communications, 2013, v. 4, n. 8, p. 2120, doi. 10.1038/ncomms3120
By:
- Castelle, Cindy J.;
- Hug, Laura A.;
- Wrighton, Kelly C.;
- Thomas, Brian C.;
- Williams, Kenneth H.;
- Wu, Dongying;
- Tringe, Susannah G.;
- Singer, Steven W.;
- Eisen, Jonathan A.;
- Banfield, Jillian F.
Publication type:
Article
Unusual biology across a group comprising more than 15% of domain Bacteria.
Published in:
Nature, 2015, v. 523, n. 7559, p. 208, doi. 10.1038/nature14486
By:
- Brown, Christopher T.;
- Hug, Laura A.;
- Thomas, Brian C.;
- Sharon, Itai;
- Castelle, Cindy J.;
- Singh, Andrea;
- Wilkins, Michael J.;
- Wrighton, Kelly C.;
- Williams, Kenneth H.;
- Banfield, Jillian F.
Publication type:
Article
Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.
Published in:
Microbiome, 2018, v. 6, n. 1, p. 1, doi. 10.1186/s40168-018-0488-2
By:
- Liu, Xiaobo;
- Li, Meng;
- Castelle, Cindy J.;
- Probst, Alexander J.;
- Zhou, Zhichao;
- Pan, Jie;
- Liu, Yang;
- Banfield, Jillian F.;
- Gu, Ji-Dong
Publication type:
Article
Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.660052
By:
- Castelle, Cindy J.;
- Méheust, Raphaël;
- Jaffe, Alexander L.;
- Seitz, Kiley;
- Gong, Xianzhe;
- Baker, Brett J.;
- Banfield, Jillian F.
Publication type:
Article
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05284-4
By:
- Zheng-Shuang Hua;
- Yan-Ni Qu;
- Qiyun Zhu;
- En-Min Zhou;
- Yan-Ling Qi;
- Yi-Rui Yin;
- Yang-Zhi Rao;
- Ye Tian;
- Yu-Xian Li;
- Lan Liu;
- Castelle, Cindy J.;
- Hedlund, Brian P.;
- Wen-Sheng Shu;
- Knight, Rob;
- Wen-Jun Li
Publication type:
Article

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