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Whole Genome Sequence Analysis of Brucella spp. from Human, Livestock, and Wildlife in South Africa.
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- Journal of Microbiology, 2024, v. 62, n. 9, p. 759, doi. 10.1007/s12275-024-00155-8
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- Article
The prediction of protein subcellular localization from sequence: a shortcut to functional genome annotation.
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- Briefings in Functional Genomics & Proteomics, 2008, v. 7, n. 1, p. 63, doi. 10.1093/bfgp/eln003
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- Article
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study.
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- Proteomics, 2023, v. 23, n. 17, p. 1, doi. 10.1002/pmic.202200323
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- Article
Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches.
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- PEDS: Protein Engineering, Design & Selection, 2015, v. 28, n. 5, p. 127, doi. 10.1093/protein/gzv012
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- Article
Role of the C-terminus of Pleurotus eryngii Ery4 laccase in determining enzyme structure, catalytic properties and stability.
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- PEDS: Protein Engineering, Design & Selection, 2013, v. 26, n. 1, p. 1, doi. 10.1093/protein/gzs056
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- Article
NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S8-S6
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- Publication type:
- Article
WS-SNPs&GO: a web server for predicting the eleterious effect of human protein variants sing functional annotation.
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- BMC Genomics, 2013, v. 14, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-14-S3-S6
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- Article
Predicting cancer-associated germline variations in proteins.
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- BMC Genomics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-13-S4-S8
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- Article
On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions.
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- BMC Genomics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-13-S4-S5
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- Publication type:
- Article
A genome wide association study for backfat thickness in Italian Large White pigs highlights new regions affecting fat deposition including neuronal genes.
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- BMC Genomics, 2012, v. 13, n. 1, p. 583, doi. 10.1186/1471-2164-13-583
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- Article
An initial comparative map of copy number variations in the goat (Capra hircus) genome.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-639
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- Article
Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito.
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- BMC Bioinformatics, 2020, v. 21, p. N.PAG, doi. 10.1186/s12859-020-03617-z
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- Publication type:
- Article
Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network.
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- Proteomics, 2004, v. 4, n. 6, p. 1665, doi. 10.1002/pmic.200300745
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- Publication type:
- Article
A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding.
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- Plant Biotechnology Journal, 2015, v. 13, n. 5, p. 648, doi. 10.1111/pbi.12288
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- Article
Wood feeding and social living: Draft genome of the subterranean termite Reticulitermes lucifugus (Blattodea; Termitoidae).
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- Insect Molecular Biology, 2023, v. 32, n. 2, p. 118, doi. 10.1111/imb.12818
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- Article
MultifacetedProtDB: a database of human proteins with multiple functions.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D494, doi. 10.1093/nar/gkad783
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- Publication type:
- Article
BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W60, doi. 10.1093/nar/gkab328
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- Article
BUSCA: an integrative web server to predict subcellular localization of proteins.
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- Nucleic Acids Research, 2018, v. 46, n. W1, p. W459, doi. 10.1093/nar/gky320
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- Article
The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W285, doi. 10.1093/nar/gkx330
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- Article
Tools and data services registry: a community effort to document bioinformatics resources.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. D38, doi. 10.1093/nar/gkv1116
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- Article
PhenPath: a tool for characterizing biological functions underlying different phenotypes.
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- BMC Genomics, 2019, v. 20, n. 8, p. N.PAG, doi. 10.1186/s12864-019-5868-x
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- Publication type:
- Article
Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5645-x
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- Publication type:
- Article
Cover Picture: Hierarchical Mechanochemical Switches in Angiostatin (ChemBioChem 11/2006).
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- ChemBioChem, 2006, v. 7, n. 11, p. 1629, doi. 10.1002/cbic.200690033
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- Article
Hierarchical Mechanochemical Switches in Angiostatin.
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- ChemBioChem, 2006, v. 7, n. 11, p. 1774, doi. 10.1002/cbic.200600227
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- Publication type:
- Article
Assessment of predicted enzymatic activity of α‐N‐acetylglucosaminidase variants of unknown significance for CAGI 2016.
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- Human Mutation, 2019, v. 40, n. 9, p. 1519, doi. 10.1002/humu.23875
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- Publication type:
- Article
Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI‐5.
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- Human Mutation, 2019, v. 40, n. 9, p. 1474, doi. 10.1002/humu.23856
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- Article
Assessing predictions of the impact of variants on splicing in CAGI5.
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- Human Mutation, 2019, v. 40, n. 9, p. 1215, doi. 10.1002/humu.23869
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- Article
Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.
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- Human Mutation, 2019, v. 40, n. 9, p. 1546, doi. 10.1002/humu.23861
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- Publication type:
- Article
CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases.
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- Human Mutation, 2019, v. 40, n. 9, p. 1373, doi. 10.1002/humu.23874
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- Article
Assessing computational predictions of the phenotypic effect of cystathionine‐beta‐synthase variants.
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- Human Mutation, 2019, v. 40, n. 9, p. 1530, doi. 10.1002/humu.23868
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- Article
Assessing predictions on fitness effects of missense variants in calmodulin.
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- Human Mutation, 2019, v. 40, n. 9, p. 1463, doi. 10.1002/humu.23857
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- Article
Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.
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- Human Mutation, 2019, v. 40, n. 9, p. 1612, doi. 10.1002/humu.23849
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- Article
Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.
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- Human Mutation, 2019, v. 40, n. 9, p. 1392, doi. 10.1002/humu.23843
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- Article
Assessment of methods for predicting the effects of PTEN and TPMT protein variants.
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- Human Mutation, 2019, v. 40, n. 9, p. 1495, doi. 10.1002/humu.23838
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- Article
Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.
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- Human Mutation, 2019, v. 40, n. 9, p. 1314, doi. 10.1002/humu.23825
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- Publication type:
- Article
Are machine learning based methods suited to address complex biological problems? Lessons from CAGI‐5 challenges.
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- Human Mutation, 2019, v. 40, n. 9, p. 1455, doi. 10.1002/humu.23784
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- Publication type:
- Article
Whole Genome Sequence Analysis of Brucella abortus Isolates from Various Regions of South Africa.
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- Microorganisms, 2021, v. 9, n. 3, p. 570, doi. 10.3390/microorganisms9030570
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- Publication type:
- Article
Generation of diversity by somatic mutation in the C amelus dromedarius T-cell receptor gamma variable domains.
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- European Journal of Immunology, 2012, v. 42, n. 12, p. 3416, doi. 10.1002/eji.201142176
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- Article
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1037-6
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- Article
Analysis of all subunits, SDHA, SDHB, SDHC, SDHD, of the succinate dehydrogenase complex in KIT/PDGFRA wild-type GIST.
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- European Journal of Human Genetics, 2014, v. 22, n. 1, p. 32, doi. 10.1038/ejhg.2013.80
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- Article
Effect of molecular confinement on internal enzyme dynamics: Frequency domain fluorometry and molecular dynamics simulation studies.
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- Biopolymers, 2002, v. 67, n. 2, p. 85, doi. 10.1002/bip.10058
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- Article
CoCoNat: a novel method based on deep learning for coiled-coil prediction.
- Published in:
- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad495
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- Publication type:
- Article
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5168, doi. 10.1093/bioinformatics/btac678
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- Publication type:
- Article
DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks.
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- Bioinformatics, 2020, v. 36, n. 1, p. 56, doi. 10.1093/bioinformatics/btz512
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- Article
On the biases in predictions of protein stability changes upon variations: the INPS test case.
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- Bioinformatics, 2019, v. 35, n. 14, p. 2525, doi. 10.1093/bioinformatics/bty979
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- Article
DeepSig: deep learning improves signal peptide detection in proteins.
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- Bioinformatics, 2018, v. 34, n. 10, p. 1690, doi. 10.1093/bioinformatics/btx818
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- Article
ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model.
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- 2017
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- Publication type:
- Product Review
SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments.
- Published in:
- Bioinformatics, 2017, v. 33, n. 3, p. 347, doi. 10.1093/bioinformatics/btw656
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- Publication type:
- Article
NET-GE: a web-server for NETwork-based human gene enrichment.
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- Bioinformatics, 2016, v. 32, n. 22, p. 3489, doi. 10.1093/bioinformatics/btw508
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- Publication type:
- Article
INPS-MD: a web server to predict stability of protein variants from sequence and structure.
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- Bioinformatics, 2016, v. 32, n. 16, p. 2542, doi. 10.1093/bioinformatics/btw192
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- Publication type:
- Article