Works by Carvalho, Gary R.

Results: 72

Association between Growth and Pan I* Genotype within Atlantic Cod Full-Sibling Families.

Published in:

Transactions of the American Fisheries Society, 2006, v. 135, n. 1, p. 241, doi. 10.1577/T05-130.1

By:

Case, Richard A. J.;
Hutchinson, William F.;
Hauser, Lorenz;
Buehler, Vivian;
Clemmesen, Catriona;
Dahle, Geir;
Kjesbu, Olav S.;
Moksness, Erlend;
Otter, Håkon;
Paulsen, Helge;
Svåsand, Terje;
Thorsen, Anders;
Carvalho, Gary R.

Publication type:

Article

Range‐wide genomic data synthesis reveals transatlantic vicariance and secondary contact in Atlantic cod.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 23, p. 12140, doi. 10.1002/ece3.4672

By:

Fairweather, Robert;
Bradbury, Ian R.;
Helyar, Sarah J.;
de Bruyn, Mark;
Therkildsen, Nina O.;
Bentzen, Paul;
Hemmer‐Hansen, Jakob;
Carvalho, Gary R.

Publication type:

Article

Population-level consequences for wild fish exposed to sublethal concentrations of chemicals - a critical review.

Published in:

Fish & Fisheries, 2016, v. 17, n. 3, p. 545, doi. 10.1111/faf.12125

By:

Hamilton, Patrick B;
Cowx, Ian G;
Oleksiak, Marjorie F;
Griffiths, Andrew M;
Grahn, Mats;
Stevens, Jamie R;
Carvalho, Gary R;
Nicol, Elizabeth;
Tyler, Charles R

Publication type:

Article

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts.

Published in:

Fish & Fisheries, 2008, v. 9, n. 4, p. 333, doi. 10.1111/j.1467-2979.2008.00299.x

By:

Hauser, Lorenz;
Carvalho, Gary R.

Publication type:

Article

Editorial.

Published in:

2008

By:

Hauser, Lorenz;
Waples, Robin S.;
Carvalho, Gary R.

Publication type:

Editorial

Book Reviews Population Genetics: Principles and Applications for Fisheries Scientists.

Published in:

2004

By:

Carvalho, Gary R.

Publication type:

Book Review

An 'Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks.

Published in:

Genes, 2017, v. 8, n. 6, p. 164, doi. 10.3390/genes8060164

By:

Thomas, Jessica E.;
Carvalho, Gary R.;
Haile, James;
Martin, Michael D.;
Samaniego Castruita, Jose A.;
Niemann, Jonas;
Sinding, Mikkel-Holger S.;
Sandoval-Velasco, Marcela;
Rawlence, Nicolas J.;
Fuller, Errol;
Fjeldså, Jon;
Hofreiter, Michael;
Stewart, John R.;
Gilbert, M. Thomas P.;
Knapp, Michael

Publication type:

Article

Epistatic regulation of growth in Atlantic salmon revealed: a QTL study performed on the domesticated-wild interface.

Published in:

BMC Genetics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12863-020-0816-y

By:

Besnier, Francois;
Solberg, Monica F.;
Harvey, Alison C.;
Carvalho, Gary R.;
Bekkevold, Dorte;
Taylor, Martin I.;
Creer, Simon;
Nielsen, Einar E.;
Skaala, Øystein;
Ayllon, Fernando;
Dahle, Geir;
Glover, Kevin A.

Publication type:

Article

Experimental harvesting of fish populations drives genetically based shifts in body size and maturation.

Published in:

Frontiers in Ecology & the Environment, 2013, v. 11, n. 4, p. 181, doi. 10.1890/120229

By:

van Wijk, Serinde J;
Taylor, Martin I;
Creer, Simon;
Dreyer, Christine;
Rodrigues, Fernanda M;
Ramnarine, Indar W;
van Oosterhout, Cock;
Carvalho, Gary R

Publication type:

Article

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-017-0005-3

By:

Seymour, Mathew;
Durance, Isabelle;
Cosby, Bernard J.;
Ransom-Jones, Emma;
Deiner, Kristy;
Ormerod, Steve J.;
Colbourne, John K.;
Wilgar, Gregory;
Carvalho, Gary R.;
de Bruyn, Mark;
Edwards, François;
Emmett, Bridget A.;
Bik, Holly M.;
Creer, Simon

Publication type:

Article

Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring.

Published in:

ICES Journal of Marine Science / Journal du Conseil, 2015, v. 72, n. 6, p. 1790, doi. 10.1093/icesjms/fsu247

By:

Bekkevold, Dorte;
Helyar, Sarah J.;
Limborg, Morten T.;
Nielsen, Einar E.;
Hemmer-Hansen, Jakob;
Clausen, Lotte A. W.;
Carvalho, Gary R.

Publication type:

Article

Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing.

Published in:

ICES Journal of Marine Science / Journal du Conseil, 2014, v. 71, n. 4, p. 794, doi. 10.1093/icesjms/fst185

By:

Heath, Michael R.;
Culling, Mark A.;
Crozier, Walter W.;
Fox, Clive J.;
Gurney, William S. C.;
Hutchinson, William F.;
Nielsen, Einar E.;
O'Sullivan, Martha;
Preedy, Katharine F.;
Righton, David A.;
Speirs, Douglas C.;
Taylor, Martin I.;
Wright, Peter J.;
Carvalho, Gary R.

Publication type:

Article

Fish Product Mislabelling: Failings of Traceability in the Production Chain and Implications for Illegal, Unreported and Unregulated (IUU) Fishing.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098691

By:

Helyar, Sarah J.;
Lloyd, Hywel ap D.;
de Bruyn, Mark;
Leake, Jonathan;
Bennett, Niall;
Carvalho, Gary R.

Publication type:

Article

SNP Discovery in European Anchovy (Engraulis encrasicolus, L) by High-Throughput Transcriptome and Genome Sequencing.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070051

By:

Montes, Iratxe;
Conklin, Darrell;
Albaina, Aitor;
Creer, Simon;
Carvalho, Gary R.;
Santos, María;
Estonba, Andone

Publication type:

Article

DNA Barcoding Reveals Cryptic Diversity within Commercially Exploited Indo-Malay Carangidae (Teleosteii: Perciformes).

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049623

By:

Mat Jaafar, Tun Nurul Aimi;
Taylor, Martin I.;
Mohd Nor, Siti Azizah;
de Bruyn, Mark;
Carvalho, Gary R.

Publication type:

Article

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus).

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042089

By:

Helyar, Sarah J.;
Limborg, Morten T.;
Bekkevold, Dorte;
Babbucci, Massimiliano;
Van Houdt, Jeroen;
Maes, Gregory E.;
Bargelloni, Luca;
Nielsen, Rasmus O.;
Taylor, Martin I.;
Ogden, Rob;
Cariani, Alessia;
Carvalho, Gary R.;
Panitz, Frank;
Palsson, Arnar

Publication type:

Article

A Ranking System for Reference Libraries of DNA Barcodes: Application to Marine Fish Species from Portugal.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035858

By:

Costa, Filipe O.;
Landi, Monica;
Martins, Rogelia;
Costa, Maria H.;
Costa, Maria E.;
Carneiro, Miguel;
Alves, Maria J.;
Steinke, Dirk;
Carvalho, Gary R.

Publication type:

Article

Multigene Molecular Systematics Confirm Species Status of Morphologically Convergent Pagurus Hermit Crabs.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028233

By:

da Silva, Joana Matzen;
dos Santos, Antonina;
Cunha, Marina R.;
Costa, Filipe O.;
Creer, Simon;
Carvalho, Gary R.

Publication type:

Article

Novel Tools for Conservation Genomics: Comparing Two High-Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake.

Published in:

2011

By:

Milano, Ilaria;
Babbucci, Massimiliano;
Panitz, Frank;
Ogden, Rob;
Nielsen, Rasmus O.;
Taylor, Martin I.;
Helyar, Sarah J.;
Carvalho, Gary R.;
Espiñeira, Montserrat;
Atanassova, Miroslava;
Tinti, Fausto;
Maes, Gregory E.;
Patarnello, Tomaso;
Consortium, FishPopTrace;
Bargelloni, Luca

Publication type:

Case Study

Systematic and Evolutionary Insights Derived from mtDNA COI Barcode Diversity in the Decapoda (Crustacea: Malacostraca).

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019449

By:

da Silva, Joana Matzen;
Creer, Simon;
dos Santos, Antonina;
Costa, Ana C.;
Cunha, Marina R.;
Costa, Filipe O.;
Carvalho, Gary R.

Publication type:

Article

Borneo and Indochina are Major Evolutionary Hotspots for Southeast Asian Biodiversity.

Published in:

Systematic Biology, 2014, v. 63, n. 6, p. 879, doi. 10.1093/sysbio/syu047

By:

de Bruyn, Mark;
Stelbrink, Björn;
Morley, Robert J.;
Hall, Robert;
Carvalho, Gary R.;
Cannon, Charles H.;
van den Bergh, Gerrit;
Meijaard, Erik;
Metcalfe, Ian;
Boitani, Luigi;
Maiorano, Luigi;
Shoup, Robert;
von Rintelen, Thomas

Publication type:

Article

Paleo-Drainage Basin Connectivity Predicts Evolutionary Relationships across Three Southeast Asian Biodiversity Hotspots.

Published in:

Systematic Biology, 2013, v. 62, n. 3, p. 398, doi. 10.1093/sysbio/syt007

By:

DE BRUYN, MARK;
RUBER, LUKAS;
NYLINDER, STEPHAN;
STELBRINK, BJÖRN;
LOVEJOY, NATHAN R.;
LAVOUE, SÉBASTIÉN;
TAN, HEOK HUI;
NUGROHO, ESTU;
WOWOR, DAISY;
NG, PETER K. L.;
AZIZAH, M. N. SITI;
VON RINTELEN, THOMAS;
HALL, ROBERT;
CARVALHO, GARY R.

Publication type:

Article

Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates.

Published in:

Molecular Ecology, 2019, v. 28, n. 7, p. 1784, doi. 10.1111/mec.15052

By:

Vieira, Pedro E.;
Desiderato, Andrea;
Holdich, David M.;
Soares, Pedro;
Creer, Simon;
Carvalho, Gary R.;
Costa, Filipe O.;
Queiroga, Henrique

Publication type:

Article

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations ( Merluccius merluccius).

Published in:

Molecular Ecology, 2014, v. 23, n. 1, p. 118, doi. 10.1111/mec.12568

By:

Milano, Ilaria;
Babbucci, Massimiliano;
Cariani, Alessia;
Atanassova, Miroslava;
Bekkevold, Dorte;
Carvalho, Gary R.;
Espiñeira, Montserrat;
Fiorentino, Fabio;
Garofalo, Germana;
Geffen, Audrey J.;
Hansen, Jakob. H.;
Helyar, Sarah J.;
Nielsen, Einar E.;
Ogden, Rob;
Patarnello, Tomaso;
Stagioni, Marco;
Tinti, Fausto;
Bargelloni, Luca

Publication type:

Article

A genomic island linked to ecotype divergence in Atlantic cod.

Published in:

Molecular Ecology, 2013, v. 22, n. 10, p. 2653, doi. 10.1111/mec.12284

By:

Hemmer‐Hansen, Jakob;
Nielsen, Einar E.;
Therkildsen, Nina O.;
Taylor, Martin I.;
Ogden, Rob;
Geffen, Audrey J.;
Bekkevold, Dorte;
Helyar, Sarah;
Pampoulie, Christophe;
Johansen, Torild;
Carvalho, Gary R.

Publication type:

Article

Corrigendum.

Published in:

Molecular Ecology, 2013, v. 22, n. 8, p. 2355, doi. 10.1111/mec.12247

By:

Limborg, Morten T.;
Helyar, Sarah J.;
Bruyn, Mark;
Taylor, Martin I.;
Nielsen, Einar E.;
Ogden, Rob;
Carvalho, Gary R.;
Bekkevold, Dorte

Publication type:

Article

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring ( Clupea harengus).

Published in:

Molecular Ecology, 2012, v. 21, n. 15, p. 3686, doi. 10.1111/j.1365-294X.2012.05639.x

By:

LIMBORG, MORTEN T.;
HELYAR, SARAH J.;
De BRUYN, MARK;
TAYLOR, MARTIN I.;
NIELSEN, EINAR E.;
OGDEN, ROB;
CARVALHO, GARY R.;
BEKKEVOLD, DORTE

Publication type:

Article

The biogeography of the atlantic salmon (Salmo salar) gut microbiome.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 5, p. 1280, doi. 10.1038/ismej.2015.189

By:

Llewellyn, Martin S;
McGinnity, Philip;
Dionne, Melanie;
Letourneau, Justine;
Thonier, Florian;
Carvalho, Gary R;
Creer, Simon;
Derome, Nicolas

Publication type:

Article

Reconstruction of Microsatellite Mutation History Reveals a Strong and Consistent Deletion Bias in Invasive Clonal Snails, Potamopyrgus antipodarum.

Published in:

Genetics, 2002, v. 162, n. 2, p. 813, doi. 10.1093/genetics/162.2.813

By:

Weetman, David;
Hauser, Lorenz;
Carvalho, Gary R.

Publication type:

Article

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY.

Published in:

Evolution, 2009, v. 63, n. 11, p. 2939, doi. 10.1111/j.1558-5646.2009.00779.x

By:

Gaggiotti, Oscar E.;
Bekkevold, Dorte;
Jørgensen, Hanne B. H.;
Foll, Matthieu;
Carvalho, Gary R.;
Andre, Carl;
Ruzzante, Daniel E.

Publication type:

Article

Time and space in biogeography: response to Parenti & Ebach (2013).

Published in:

Journal of Biogeography, 2013, v. 40, n. 11, p. 2204, doi. 10.1111/jbi.12166

By:

Bruyn, Mark;
Stelbrink, Björn;
Page, Timothy J.;
Phillips, Matthew J.;
Lohman, David J.;
Albrecht, Christian;
Hall, Robert;
Rintelen, Kristina;
Ng, Peter K.L.;
Shih, Hsi‐Te;
Carvalho, Gary R.;
Rintelen, Thomas;
Katinas, Liliana

Publication type:

Article

Population structure on breeding grounds of Lake Malawi’s ‘twilight zone’ cichlid fishes.

Published in:

Journal of Biogeography, 2010, v. 37, n. 2, p. 258, doi. 10.1111/j.1365-2699.2009.02196.x

By:

Genner, Martin J.;
Nichols, Paul;
Shaw, Paul W.;
Carvalho, Gary R.;
Robinson, Rosanna L.;
Turner, George F.

Publication type:

Article

Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0179557

By:

Beck, Samantha V.;
Carvalho, Gary R.;
Barlow, Axel;
Rüber, Lukas;
Hui Tan, Heok;
Nugroho, Estu;
Wowor, Daisy;
Mohd Nor, Siti Azizah;
Herder, Fabian;
Muchlisin, Zainal A.;
de Bruyn, Mark

Publication type:

Article

Artificial introductions, evolutionary change and population differentiation in Trinidadian guppies (Poecilia reticulata; Poeciliidae).

Published in:

Biological Journal of the Linnean Society, 1996, v. 57, n. 3, p. 219, doi. 10.1111/j.1095-8312.1996.tb00310.x

By:

Carvalho, Gary R.;
Shaw, Paul W.;
Hauser, Lorenz;
Seghers, Benoni H.;
Magurran, Anne E.

Publication type:

Article

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes.

Published in:

Global Ecology & Biogeography, 2014, v. 23, n. 11, p. 1293, doi. 10.1111/geb.12223

By:

Fonseca, Vera G.;
Carvalho, Gary R.;
Nichols, Ben;
Quince, Christopher;
Johnson, Harriet F.;
Neill, Simon P.;
Lambshead, John D.;
Thomas, W. Kelley;
Power, Deborah M.;
Creer, Simon

Publication type:

Article

Investigating the molecular systematic relationships amongst selected Plesionika ( Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea.

Published in:

Marine Ecology, 2013, v. 34, n. 2, p. 157, doi. 10.1111/j.1439-0485.2012.00530.x

By:

da Silva, Joana M;
dos Santos, Antonina;
Cunha, Marina R;
Costa, Filipe O;
Creer, Simon;
Carvalho, Gary R

Publication type:

Article

New insights into molecular evolution: prospects from the Barcode of Life Initiative (BOLI).

Published in:

Theory in Biosciences, 2010, v. 129, n. 2/3, p. 149, doi. 10.1007/s12064-010-0091-y

By:

Costa, Filipe O.;
Carvalho, Gary R.

Publication type:

Article

Nanopore environmental DNA sequencing of catch water for estimating species composition in demersal bottom trawl fisheries.

Published in:

Environmental DNA, 2024, v. 6, n. 3, p. 1, doi. 10.1002/edn3.555

By:

Maggini, Sara;
Jacobsen, Magnus Wulff;
Urban, Paulina;
Hansen, Brian Klitgaard;
Kielgast, Jos;
Bekkevold, Dorte;
Jardim, Ernesto;
Martinsohn, Jann T.;
Carvalho, Gary R.;
Nielsen, Einar E.;
Papadopulos, Alexander S. T.

Publication type:

Article

A technique for the molecular genetic analysis of Daphnia resting eggs from sub-recent lake sediments.

Published in:

Journal of Paleolimnology, 2002, v. 27, n. 4, p. 481, doi. 10.1023/A:1020380918518

By:

Reid, Vicky A.;
Carvalho, Gary R.;
George, D. Glen;
Griffiths, Huw I.

Publication type:

Article

Patterns of self compatibility, inbreeding depression, outcrossing, and sex allocation in a marine bryozoan suggest the predominating influence of sperm competition.

Published in:

Biological Journal of the Linnean Society, 2009, v. 98, n. 3, p. 519, doi. 10.1111/j.1095-8312.2009.01312.x

By:

Hughes, Roger N.;
Wright, Peter J.;
Carvalho, Gary R.;
Hutchinson, William F.

Publication type:

Article

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 14087, doi. 10.1038/ncomms14087

By:

Bista, Iliana;
Carvalho, Gary R.;
Walsh, Kerry;
Seymour, Mathew;
Hajibabaei, Mehrdad;
Lallias, Delphine;
Christmas, Martin;
Creer, Simon

Publication type:

Article

Age of Cichlids: New Dates for Ancient Lake Fish Radiations.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 5, p. 1269, doi. 10.1093/molbev/msm050

By:

Genner, Martin J.;
Seehausen, Ole;
Lunt, David H.;
Joyce, Domino A.;
Shaw, Paul W.;
Carvalho, Gary R.;
Turner, George F.

Publication type:

Article

Molecular sexing of African rhinoceros.

Published in:

2010

By:

Peppin, Lindsay;
McEwing, Ross;
Ogden, Rob;
Hermes, Robert;
Harper, Cindy;
Guthrie, Alan;
Carvalho, Gary R.

Publication type:

Report

Genetic homogeneity among breeding grounds and nursery areas of an exploited Lake Malawi cichlid fish.

Published in:

Freshwater Biology, 2008, v. 53, n. 9, p. 1823, doi. 10.1111/j.1365-2427.2008.02004.x

By:

Genner, Martin J.;
Nichols, Paul;
Shaw, Paul W.;
Carvalho, Gary R.;
Robinson, Rosanna L.;
Turner, George F.

Publication type:

Article

Resting eggs of lake-Daphnia II. In situ observations on the hatching of eggs and their contribution to population and community structure.

Published in:

Freshwater Biology, 1989, v. 22, n. 3, p. 471, doi. 10.1111/j.1365-2427.1989.tb01119.x

By:

Wolf, Hans Georg;
Carvalho, Gary R.

Publication type:

Article

Resting eggs of lake-Daphnia I. Distribution, abundance and hatching of eggs collected from various depths in lake sediments.

Published in:

Freshwater Biology, 1989, v. 22, n. 3, p. 459, doi. 10.1111/j.1365-2427.1989.tb01118.x

By:

Carvalho, Gary R.;
Wolf, Hans Georg

Publication type:

Article

Haemoglobin synthesis in Daphnia magna Straus (Crustacea: Cladocera): ecological differentiation between neighbouring populations.

Published in:

Freshwater Biology, 1984, v. 14, n. 5, p. 501, doi. 10.1111/j.1365-2427.1984.tb00170.x

By:

Carvalho, Gary R.

Publication type:

Article

The effect of food availability, female culture-density and photoperiod on ephippia production in Daphnia magna Straus (Crustacea: Cladocera).

Published in:

Freshwater Biology, 1983, v. 13, n. 1, p. 37

By:

Hughes, Roger N.;
Carvalho, Gary R.

Publication type:

Article

Stepping stones to isolation: Impacts of a changing climate on the connectivity of fragmented fish populations.

Published in:

Evolutionary Applications, 2018, v. 11, n. 6, p. 978, doi. 10.1111/eva.12613

By:

Young, Emma F.;
Tysklind, Niklas;
Meredith, Michael P.;
de Bruyn, Mark;
Belchier, Mark;
Murphy, Eugene J.;
Carvalho, Gary R.

Publication type:

Article

A common garden design reveals population-specific variability in potential impacts of hybridization between populations of farmed and wild Atlantic salmon , Salmo salar L.

Published in:

Evolutionary Applications, 2016, v. 9, n. 3, p. 435, doi. 10.1111/eva.12346

By:

Harvey, Alison C.;
Glover, Kevin A.;
Taylor, Martin I.;
Creer, Simon;
Carvalho, Gary R.

Publication type:

Article