Works by Carrillo, Catherine D.

Results: 19

Exploiting a targeted resistome sequencing approach in assessing antimicrobial resistance in retail foods.

Published in:

Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00482-0

By:

Shay, Julie A.;
Haniford, Laura S. E.;
Cooper, Ashley;
Carrillo, Catherine D.;
Blais, Burton W.;
Lau, Calvin Ho-Fung

Publication type:

Article

A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data.

Published in:

Frontiers in Cellular & Infection Microbiology, 2012, v. 2, p. 1, doi. 10.3389/fcimb.2012.00057

By:

Carrillo, Catherine D.;
Kruczkiewicz, Peter;
Mutschall, Steven;
Tudor, Andrei;
Clark, Clifford;
Taboada, Eduardo N.

Publication type:

Article

"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00541

By:

Hetman, Benjamin M.;
Mutschall, Steven K.;
Carrillo, Catherine D.;
Thomas, James E.;
Gannon, Victor P. J.;
Inglis, G. Douglas;
Taboada, Eduardo N.

Publication type:

Article

Systematic Evaluation of Whole Genome Sequence-Based Predictions of Salmonella Serotype and Antimicrobial Resistance.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00549

By:

Cooper, Ashley L.;
Low, Andrew J.;
Koziol, Adam G.;
Thomas, Matthew C.;
Leclair, Daniel;
Tamber, Sandeep;
Wong, Alex;
Blais, Burton W.;
Carrillo, Catherine D.

Publication type:

Article

Systematic Evaluation of Whole-Genome Sequencing Based Prediction of Antimicrobial Resistance in Campylobacter jejuni and C. coli.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.776967

By:

Hodges, Lisa M.;
Taboada, Eduardo N.;
Koziol, Adam;
Mutschall, Steven;
Blais, Burton W.;
Inglis, G. Douglas;
Leclair, Daniel;
Carrillo, Catherine D.

Publication type:

Article

Multiplexed Single Intact Cell Droplet Digital PCR (MuSIC ddPCR) Method for Specific Detection of Enterohemorrhagic E. coli (EHEC) in Food Enrichment Cultures.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00332

By:

McMahon, Tanis C.;
Blais, Burton W.;
Wong, Alex;
Carrillo, Catherine D.

Publication type:

Article

A strain comparison of Campylobacter isolated from retail poultry and human clinical cases in Atlantic Canada.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0215928

By:

Hodges, Lisa M.;
Carrillo, Catherine D.;
Upham, Jacqueline P.;
Borza, Antonela;
Eisebraun, Mikaela;
Kenwell, Robyn;
Mutschall, Steven K.;
Haldane, David;
Schleihauf, Emily;
Taboada, Eduardo N.

Publication type:

Article

Modeling the limits of detection for antimicrobial resistance genes in agri-food samples: a comparative analysis of bioinformatics tools.

Published in:

BMC Microbiology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12866-023-03148-6

By:

Cooper, Ashley L.;
Low, Andrew;
Wong, Alex;
Tamber, Sandeep;
Blais, Burton W.;
Carrillo, Catherine D.

Publication type:

Article

A comparison of fourteen fully characterized mammalian-associated Campylobacter fetus isolates suggests that loss of defense mechanisms contribute to high genomic plasticity and subspecies evolution.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.10586

By:

Nadin-Davis, Susan A.;
Chmara, John;
Carrillo, Catherine D.;
Amoako, Kingsley;
Goji, Noriko;
Duceppe, Marc-Olivier;
Devenish, John

Publication type:

Article

ConFindr: rapid detection of intraspeciesand cross-species contamination inbacterial whole-genome sequence data.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6995

By:

Low, ndrew J.;
Koziol, Adam G.;
Manninger, Paul A.;
Blais, Burton;
Carrillo, Catherine D.

Publication type:

Article

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

Published in:

Molecular Ecology, 2017, v. 26, n. 17, p. 4497, doi. 10.1111/mec.14176

By:

Pascoe, Ben;
Méric, Guillaume;
Yahara, Koji;
Wimalarathna, Helen;
Murray, Susan;
Hitchings, Matthew D.;
Sproston, Emma L.;
Carrillo, Catherine D.;
Taboada, Eduardo N.;
Cooper, Kerry K.;
Huynh, Steven;
Cody, Alison J.;
Jolley, Keith A.;
Maiden, Martin C. J.;
McCarthy, Noel D.;
Didelot, Xavier;
Parker, Craig T.;
Sheppard, Samuel K.

Publication type:

Article

GeneSippr: A Rapid Whole-Genome Approach for the Identification and Characterization of Foodborne Pathogens such as Priority Shiga Toxigenic Escherichia coli.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122928

By:

Lambert, Dominic;
Carrillo, Catherine D.;
Koziol, Adam G.;
Manninger, Paul;
Blais, Burton W.

Publication type:

Article

Development and evaluation of a sensitive approach for detection and recovery of third-generation cephalosporin- and carbapenem-resistant Enterobacterales from ready-to-eat frozen stone fruit.

Published in:

Canadian Journal of Microbiology, 2025, v. 71, p. 1, doi. 10.1139/cjm-2024-0210

By:

Nasta, Adeeb;
Cooper, Ashley L.;
Tackabury, Irelynd V.;
Anastasiadis, Chloe;
Lau, Calvin Ho-Fung;
Brown, Liam P.;
Smith, Myron L.;
Tamber, Sandeep;
Carrillo, Catherine D.

Publication type:

Article

Survival of antimicrobial resistant Salmonella Heidelberg inoculated into microcosms of fresh pine wood shavings for broiler litter.

Published in:

Canadian Journal of Microbiology, 2025, v. 71, p. 1, doi. 10.1139/cjm-2024-0088

By:

Oladeinde, Adelumola;
Cook, Kimberly;
Rehman, Attiq;
Carrillo, Catherine D.;
Woyda, Reed;
Wiersma, Crystal;
Abdo, Zaid;
Johnson, Jasmine;
Bosch, Anna Marie;
Rothrock Jnr, Michael;
Diarra, Moussa S.

Publication type:

Article

Survival of antimicrobial resistant Salmonella Heidelberg inoculated into microcosms of fresh pine wood shavings for broiler litter.

Published in:

Canadian Journal of Microbiology, 2025, v. 71, n. 1, p. 1, doi. 10.1139/cjm-2024-0088

By:

Oladeinde, Adelumola;
Cook, Kimberly;
Rehman, Attiq;
Carrillo, Catherine D.;
Woyda, Reed;
Wiersma, Crystal;
Abdo, Zaid;
Johnson, Jasmine;
Bosch, Anna Marie;
Rothrock Jnr, Michael;
Diarra, Moussa S.

Publication type:

Article

Campylobacter species in animal, food, and environmental sources, and relevant testing programs in Canada.

Published in:

Canadian Journal of Microbiology, 2015, v. 61, n. 10, p. 701, doi. 10.1139/cjm-2014-0770

By:

Huang, Hongsheng;
Brooks, Brian W.;
Lowman, Ruff;
Carrillo, Catherine D.

Publication type:

Article

Analysis of Antimicrobial Resistance in Bacterial Pathogens Recovered from Food and Human Sources: Insights from 639,087 Bacterial Whole-Genome Sequences in the NCBI Pathogen Detection Database.

Published in:

Microorganisms, 2024, v. 12, n. 4, p. 709, doi. 10.3390/microorganisms12040709

By:

Cooper, Ashley L.;
Wong, Alex;
Tamber, Sandeep;
Blais, Burton W.;
Carrillo, Catherine D.

Publication type:

Article

Microbial Antagonism in Food-Enrichment Culture: Inhibition of Shiga Toxin-Producing Escherichia coli and Shigella Species.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.880043

By:

McMahon, Tanis C.;
Kingombe, Cesar Bin;
Mathews, Amit;
Seyer, Karine;
Wong, Alex;
Blais, Burton W.;
Carrillo, Catherine D.

Publication type:

Article

Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays.

Published in:

BMC Genomics, 2006, v. 7, p. 1, doi. 10.1186/1471-2164-7-43

By:

Nash, John HE;
Findlay, Wendy A;
Luebbert, Christian C;
Mykytczuk, Oksana L;
Foote, Simon J;
Taboada, Eduardo N;
Carrillo, Catherine D;
Boyd, Jessica M;
Colquhoun, Duncan J;
Reith, Michael E;
Brown, Laura L

Publication type:

Article