Works by Carmona-Saez, Pedro

Results: 40

A free radical-generating system induces the cholesterol biosynthesis pathway: a role in Alzheimer's disease.

Published in:

Aging Cell, 2009, v. 8, n. 2, p. 128, doi. 10.1111/j.1474-9726.2009.00457.x

By:

Recuero, María;
Vicente, Ma Carmen;
Martínez-García, Ana;
Ramos, María C.;
Carmona-Saez, Pedro;
Sastre, Isabel;
Aldudo, Jesús;
Vilella, Elisabet;
Frank, Ana;
Bullido, María J.;
Valdivieso, Fernando

Publication type:

Article

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W228, doi. 10.1093/nar/gkq476

By:

Vazquez, Miguel;
Nogales-Cadenas, Ruben;
Arroyo, Javier;
Botías, Pedro;
García, Raul;
Carazo, Jose M.;
Tirado, Francisco;
Pascual-Montano, Alberto;
Carmona-Saez, Pedro

Publication type:

Article

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W317, doi. 10.1093/nar/gkp416

By:

Nogales-Cadenas, Ruben;
Carmona-Saez, Pedro;
Vazquez, Miguel;
Vicente, Cesar;
Yang, Xiaoyuan;
Tirado, Francisco;
Carazo, Jose María;
Pascual-Montano, Alberto

Publication type:

Article

SENT: semantic features in text.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W153, doi. 10.1093/nar/gkp392

By:

Vazquez, Miguel;
Carmona-Saez, Pedro;
Nogales-Cadenas, Ruben;
Chagoyen, Monica;
Tirado, Francisco;
Carazo, Jose Maria;
Pascual-Montano, Alberto

Publication type:

Article

Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor Cells.

Published in:

Cancers, 2020, v. 12, n. 4, p. 801, doi. 10.3390/cancers12040801

By:

Peris-Torres, Carlos;
Plaza-Calonge, María del Carmen;
López-Domínguez, Raúl;
Domínguez-García, Silvia;
Barrientos-Durán, Antonio;
Carmona-Sáez, Pedro;
Rodríguez-Manzaneque, Juan Carlos

Publication type:

Article

Functional Enrichment Analysis of Regulatory Elements.

Published in:

Biomedicines, 2022, v. 10, n. 3, p. 590, doi. 10.3390/biomedicines10030590

By:

Garcia-Moreno, Adrian;
López-Domínguez, Raul;
Villatoro-García, Juan Antonio;
Ramirez-Mena, Alberto;
Aparicio-Puerta, Ernesto;
Hackenberg, Michael;
Pascual-Montano, Alberto;
Carmona-Saez, Pedro

Publication type:

Article

Gut Microbiota Composition Is Associated With the Global DNA Methylation Pattern in Obesity.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00613

By:

Ramos-Molina, Bruno;
Sánchez-Alcoholado, Lidia;
Cabrera-Mulero, Amanda;
Lopez-Dominguez, Raul;
Carmona-Saez, Pedro;
Garcia-Fuentes, Eduardo;
Moreno-Indias, Isabel;
Tinahones, Francisco J.

Publication type:

Article

The pediatric leukemia oncoprotein NUP98-KDM5A induces genomic instability that may facilitate malignant transformation.

Published in:

Cell Death & Disease, 2023, v. 14, n. 6, p. 1, doi. 10.1038/s41419-023-05870-5

By:

Domingo-Reinés, Joan;
Montes, Rosa;
Garcia-Moreno, Adrián;
Gallardo, Amador;
Sanchez-Manas, Jose Manuel;
Ellson, Iván;
Lamolda, Mar;
Calabro, Chiara;
López-Escamez, Jose Antonio;
Catalina, Purificación;
Carmona-Sáez, Pedro;
Real, Pedro J.;
Landeira, David;
Ramos-Mejia, Verónica

Publication type:

Article

SWI/SNF complex regulates the expression of miR-222, a tumor suppressor microRNA in lung adenocarcinoma.

Published in:

Human Molecular Genetics, 2021, v. 30, n. 24, p. 2263, doi. 10.1093/hmg/ddab187

By:

Peinado, Paola;
Andrades, Alvaro;
Martorell-Marugán, Jordi;
Haswell, Jeffrey R;
Slack, Frank J;
Carmona-Sáez, Pedro;
Medina, Pedro P

Publication type:

Article

SWI/SNF complex regulates the expression of miR-222, a tumor suppressor microRNA in lung adenocarcinoma.

Published in:

Human Molecular Genetics, 2021, v. 30, n. 23, p. 2263, doi. 10.1093/hmg/ddab187

By:

Peinado, Paola;
Andrades, Alvaro;
Martorell-Marugán, Jordi;
Haswell, Jeffrey R;
Slack, Frank J;
Carmona-Sáez, Pedro;
Medina, Pedro P

Publication type:

Article

Transcriptional profiling of MCF7 breast cancer cells in response to 5-Fluorouracil: Relationship with cell cycle changes and apoptosis, and identification of novel targets of p53.

Published in:

International Journal of Cancer, 2006, v. 119, n. 5, p. 1164, doi. 10.1002/ijc.21938

By:

Hernández-Vargas, Héctor;
Ballestar, Esteban;
Carmona-Saez, Pedro;
von Kobbe, Cayetano;
Bañón-Rodríguez, Inmaculada;
Esteller, Manel;
Moreno-Bueno, Gema;
Palacios, José

Publication type:

Article

Shared signatures between rheumatoid arthritis, systemic lupus erythematosus and Sjögren’s syndrome uncovered through gene expression meta-analysis.

Published in:

Arthritis Research & Therapy, 2014, v. 16, n. 6, p. 1, doi. 10.1186/s13075-014-0489-x

By:

Toro-Domínguez, Daniel;
Carmona-Sáez, Pedro;
Alarcón-Riquelme, Marta E

Publication type:

Article

MetaGenyo: a web tool for meta-analysis of genetic association studies.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1990-4

By:

Martorell-Marugan, Jordi;
Toro-Dominguez, Daniel;
Alarcon-Riquelme, Marta E.;
Carmona-Saez, Pedro

Publication type:

Article

A comprehensive database for integrated analysis of omics data in autoimmune diseases.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04268-4

By:

Martorell-Marugán, Jordi;
López-Domínguez, Raúl;
García-Moreno, Adrián;
Toro-Domínguez, Daniel;
Villatoro-García, Juan Antonio;
Barturen, Guillermo;
Martín-Gómez, Adoración;
Troule, Kevin;
Gómez-López, Gonzalo;
Al-Shahrour, Fátima;
González-Rumayor, Víctor;
Peña-Chilet, María;
Dopazo, Joaquín;
Sáez-Rodríguez, Julio;
Alarcón-Riquelme, Marta E.;
Carmona-Sáez, Pedro

Publication type:

Article

Differential Treatments Based on Drug-induced Gene Expression Signatures and Longitudinal Systemic Lupus Erythematosus Stratification.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-51616-9

By:

Toro-Domínguez, Daniel;
Lopez-Domínguez, Raúl;
García Moreno, Adrián;
Villatoro-García, Juan A.;
Martorell-Marugán, Jordi;
Goldman, Daniel;
Petri, Michelle;
Wojdyla, Daniel;
Pons-Estel, Bernardo A.;
Isenberg, David;
Morales-Montes de Oca, Gabriela;
Trejo-Zambrano, María Isabel;
García González, Benjamín;
Rosetti, Florencia;
Gómez-Martín, Diana;
Romero-Díaz, Juanita;
Carmona-Sáez, Pedro;
Alarcón-Riquelme, Marta E.

Publication type:

Article

NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-44597-2

By:

Requena, Francisco;
Asenjo, Helena G.;
Barturen, Guillermo;
Martorell-Marugán, Jordi;
Carmona-Sáez, Pedro;
Landeira, David

Publication type:

Article

Editorial: Mathematical and computational methods in physiology.

Published in:

Frontiers in Physiology, 2022, v. 13, p. 1, doi. 10.3389/fphys.2022.975075

By:

Femia, Pedro;
Melchor, Juan;
Carmona-Saez, Pedro

Publication type:

Article

Exosomal miRNA profile as complementary tool in the diagnostic and prediction of treatment response in localized breast cancer under neoadjuvant chemotherapy.

Published in:

2019

By:

Rodríguez-Martínez, Alba;
de Miguel-Pérez, Diego;
Ortega, Francisco Gabriel;
García-Puche, José Luis;
Robles-Fernández, Inmaculada;
Exposito, José;
Martorell-Marugan, Jordi;
Carmona-Sáez, Pedro;
Garrido-Navas, María del Carmen;
Rolfo, Christian;
Ilyine, Hugh;
Lorente, José Antonio;
Legueren, Marta;
Serrano, María José

Publication type:

journal article

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Published in:

Bioinformatics, 2008, v. 24, n. 9, p. 1208, doi. 10.1093/bioinformatics/btn094

By:

Federico Abascal;
Pedro Carmona-Saez;
Jose-Maria Carazo;
Alberto Pascual-Montano

Publication type:

Article

Support for phosphoinositol 3 kinase and mTOR inhibitors as treatment for lupus using in-silico drug-repurposing analysis.

Published in:

Arthritis Research & Therapy, 2017, v. 19, p. 1, doi. 10.1186/s13075-017-1263-7

By:

Toro-Domínguez, Daniel;
Carmona-Sáez, Pedro;
Alarcón-Riquelme, Marta E.

Publication type:

Article

Identification of Exosomal MicroRNA Signature by Liquid Biopsy in Hereditary Hemorrhagic Telangiectasia Patients.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 17, p. 9450, doi. 10.3390/ijms22179450

By:

Pozo-Agundo, Ana;
Villaescusa, Nerea;
Martorell-Marugán, Jordi;
Soriano, Olga;
Leyva, Socorro;
Jódar-Reyes, Ana Belén;
Botella, Luisa María;
Carmona-Sáez, Pedro;
Blanco, Francisco Javier

Publication type:

Article

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 366, doi. 10.1186/1471-2105-7-366

By:

Pascual-Montano, Alberto;
Carmona-Saez, Pedro;
Chagoyen, Monica;
Tirado, Francisco;
Carazo, Jose M;
Pascual-Marqui, Roberto D

Publication type:

Article

DREIMT: a drug repositioning database and prioritization tool for immunomodulation.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 578, doi. 10.1093/bioinformatics/btaa727

By:

Troulé, Kevin;
López-Fernández, Hugo;
García-Martín, Santiago;
Reboiro-Jato, Miguel;
Carretero-Puche, Carlos;
Martorell-Marugán, Jordi;
Martín-Serrano, Guillermo;
Carmona-Sáez, Pedro;
Glez-Peña, Daniel;
Al-Shahrour, Fátima;
Gómez-López, Gonzalo

Publication type:

Article

mCSEA: detecting subtle differentially methylated regions.

Published in:

Bioinformatics, 2019, v. 35, n. 18, p. 3257, doi. 10.1093/bioinformatics/btz096

By:

Martorell-Marugán, Jordi;
González-Rumayor, Víctor;
Carmona-Sáez, Pedro

Publication type:

Article

ImaGEO: integrative gene expression meta-analysis from GEO database.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 880, doi. 10.1093/bioinformatics/bty721

By:

Toro-Domínguez, Daniel;
Martorell-Marugán, Jordi;
López-Domínguez, Raúl;
García-Moreno, Adrián;
González-Rumayor, Víctor;
Alarcón-Riquelme, Marta E;
Carmona-Sáez, Pedro

Publication type:

Article

Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3691, doi. 10.1093/bioinformatics/btx502

By:

Carmona-Sáez, Pedro;
Varela, Nieves;
Luque, María José;
Toro-Domínguez, Daniel;
Martorell-Marugan, Jordi;
Alarcón-Riquelme, Marta E.;
Marañón, Concepción

Publication type:

Article

DExMA: An R Package for Performing Gene Expression Meta-Analysis with Missing Genes.

Published in:

Mathematics (2227-7390), 2022, v. 10, n. 18, p. 3376, doi. 10.3390/math10183376

By:

Villatoro-García, Juan Antonio;
Martorell-Marugán, Jordi;
Toro-Domínguez, Daniel;
Román-Montoya, Yolanda;
Femia, Pedro;
Carmona-Sáez, Pedro

Publication type:

Article

Transcription Factor Activity Inference in Systemic Lupus Erythematosus.

Published in:

Life (2075-1729), 2021, v. 11, n. 4, p. 299, doi. 10.3390/life11040299

By:

Lopez-Dominguez, Raul;
Toro-Dominguez, Daniel;
Martorell-Marugan, Jordi;
Garcia-Moreno, Adrian;
Holland, Christian H.;
Saez-Rodriguez, Julio;
Goldman, Daniel;
Petri, Michelle A.;
Alarcon-Riquelme, Marta E.;
Carmona-Saez, Pedro

Publication type:

Article

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.

Published in:

Nucleic Acids Research, 2022, v. 50, n. W1, p. W710, doi. 10.1093/nar/gkac363

By:

Aparicio-Puerta, Ernesto;
Gómez-Martín, Cristina;
Giannoukakos, Stavros;
Medina, José María;
Scheepbouwer, Chantal;
García-Moreno, Adrián;
Carmona-Saez, Pedro;
Fromm, Bastian;
Pegtel, Michiel;
Keller, Andreas;
Marchal, Juan Antonio;
Hackenberg, Michael

Publication type:

Article

iPS-Derived Early Oligodendrocyte Progenitor Cells from SPMS Patients Reveal Deficient In Vitro Cell Migration Stimulation.

Published in:

Cells (2073-4409), 2020, v. 9, n. 8, p. 1803, doi. 10.3390/cells9081803

By:

Lopez-Caraballo, Lidia;
Martorell-Marugan, Jordi;
Carmona-Sáez, Pedro;
Gonzalez-Munoz, Elena

Publication type:

Article

MiRNA expression as outcome predictor in pediatric AML: systematic evaluation of a new model.

Published in:

NPJ Genomic Medicine, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41525-024-00424-w

By:

Ellson, Ivan;
Martorell-Marugán, Jordi;
Carmona-Sáez, Pedro;
Ramos-Mejia, Verónica

Publication type:

Article

Integrative Analysis Reveals a Molecular Stratification of Systemic Autoimmune Diseases.

Published in:

Arthritis & Rheumatology, 2021, v. 73, n. 6, p. 1073, doi. 10.1002/art.41610

By:

Barturen, Guillermo;
Babaei, Sepideh;
Català‐Moll, Francesc;
Martínez‐Bueno, Manuel;
Makowska, Zuzanna;
Martorell‐Marugán, Jordi;
Carmona‐Sáez, Pedro;
Toro‐Domínguez, Daniel;
Carnero‐Montoro, Elena;
Teruel, María;
Kerick, Martin;
Acosta‐Herrera, Marialbert;
Le Lann, Lucas;
Jamin, Christophe;
Rodríguez‐Ubreva, Javier;
García‐Gómez, Antonio;
Kageyama, Jorge;
Buttgereit, Anne;
Hayat, Sikander;
Mueller, Joerg

Publication type:

Article

Stratification of Systemic Lupus Erythematosus Patients Into Three Groups of Disease Activity Progression According to Longitudinal Gene Expression.

Published in:

Arthritis & Rheumatology, 2018, v. 70, n. 12, p. 2025, doi. 10.1002/art.40653

By:

Toro‐Domínguez, Daniel;
Martorell‐Marugán, Jordi;
Goldman, Daniel;
Petri, Michelle;
Carmona‐Sáez, Pedro;
Alarcón‐Riquelme, Marta E.

Publication type:

Article

Explainable deep neural networks for predicting sample phenotypes from single-cell transcriptomics.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae673

By:

Martorell-Marugán, Jordi;
López-Domínguez, Raúl;
Villatoro-García, Juan Antonio;
Toro-Domínguez, Daniel;
Chierici, Marco;
Jurman, Giuseppe;
Carmona-Sáez, Pedro

Publication type:

Article

Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1093/bib/bbad454

By:

Toro-Domínguez, Daniel;
Martorell-Marugán, Jordi;
Martinez-Bueno, Manuel;
López-Domínguez, Raúl;
Carnero-Montoro, Elena;
Barturen, Guillermo;
Goldman, Daniel;
Petri, Michelle;
Carmona-Sáez, Pedro;
Alarcón-Riquelme, Marta E

Publication type:

Article

Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac332

By:

Toro-Domínguez, Daniel;
Martorell-Marugán, Jordi;
Martinez-Bueno, Manuel;
López-Domínguez, Raúl;
Carnero-Montoro, Elena;
Barturen, Guillermo;
Goldman, Daniel;
Petri, Michelle;
Carmona-Sáez, Pedro;
Alarcón-Riquelme, Marta E

Publication type:

Article

A survey of gene expression meta-analysis: methods and applications.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1694, doi. 10.1093/bib/bbaa019

By:

Toro-Domínguez, Daniel;
Villatoro-García, Juan Antonio;
Martorell-Marugán, Jordi;
Román-Montoya, Yolanda;
Alarcón-Riquelme, Marta E;
Carmona-Sáez, Pedro

Publication type:

Article

GARP is a key molecule for mesenchymal stromal cell responses to TGF‐β and fundamental to control mitochondrial ROS levels.

Published in:

Stem Cells Translational Medicine, 2020, v. 9, n. 5, p. 636, doi. 10.1002/sctm.19-0372

By:

Carrillo‐Gálvez, Ana Belén;
Gálvez‐Peisl, Sheyla;
González‐Correa, Juan Elías;
Haro‐Carrillo, Marina;
Ayllón, Verónica;
Carmona‐Sáez, Pedro;
Ramos‐Mejía, Verónica;
Galindo‐Moreno, Pablo;
Cara, Francisca E.;
Granados‐Principal, Sergio;
Muñoz, Pilar;
Martin, Francisco;
Anderson, Per

Publication type:

Article

Computational Methods and Software Tools for Functional Analysis of miRNA Data.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 9, p. 1252, doi. 10.3390/biom10091252

By:

Garcia-Moreno, Adrian;
Carmona-Saez, Pedro

Publication type:

Article

Placental DNA methylation signatures of maternal smoking during pregnancy and potential impacts on fetal growth.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24558-y

By:

Everson, Todd M.;
Vives-Usano, Marta;
Seyve, Emie;
Cardenas, Andres;
Lacasaña, Marina;
Craig, Jeffrey M.;
Lesseur, Corina;
Baker, Emily R.;
Fernandez-Jimenez, Nora;
Heude, Barbara;
Perron, Patrice;
Gónzalez-Alzaga, Beatriz;
Halliday, Jane;
Deyssenroth, Maya A.;
Karagas, Margaret R.;
Íñiguez, Carmen;
Bouchard, Luigi;
Carmona-Sáez, Pedro;
Loke, Yuk J.;
Hao, Ke

Publication type:

Article