Works by Caporaso, J. Gregory

Results: 66
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    Best practices to evaluate the impact of biomedical research software—metric collection beyond citations.

    Published in:
    Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae469
    By:
    • Afiaz, Awan;
    • Ivanov, Andrey A;
    • Chamberlin, John;
    • Hanauer, David;
    • Savonen, Candace L;
    • Goldman, Mary J;
    • Morgan, Martin;
    • Reich, Michael;
    • Getka, Alexander;
    • Holmes, Aaron;
    • Pati, Sarthak;
    • Knight, Dan;
    • Boutros, Paul C;
    • Bakas, Spyridon;
    • Caporaso, J Gregory;
    • Fiol, Guilherme Del;
    • Hochheiser, Harry;
    • Haas, Brian;
    • Schloss, Patrick D;
    • Eddy, James A
    Publication type:
    Article
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    Oral microbial community composition is associated with pancreatic cancer: A case‐control study in Iran.

    Published in:
    Cancer Medicine, 2020, v. 9, n. 2, p. 797, doi. 10.1002/cam4.2660
    By:
    • Vogtmann, Emily;
    • Han, Yongli;
    • Caporaso, J. Gregory;
    • Bokulich, Nicholas;
    • Mohamadkhani, Ashraf;
    • Moayyedkazemi, Alireza;
    • Hua, Xing;
    • Kamangar, Farin;
    • Wan, Yunhu;
    • Suman, Shalabh;
    • Zhu, Bin;
    • Hutchinson, Amy;
    • Dagnall, Casey;
    • Jones, Kristine;
    • Hicks, Belynda;
    • Shi, Jianxin;
    • Malekzadeh, Reza;
    • Abnet, Christian C.;
    • Pourshams, Akram
    Publication type:
    Article
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    Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16–17, 2017.

    Published in:
    Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0596-z
    By:
    • Sinha, Rashmi;
    • Ahsan, Habibul;
    • Blaser, Martin;
    • Caporaso, J. Gregory;
    • Carmical, Joseph Russell;
    • Chan, Andrew T.;
    • Fodor, Anthony;
    • Gail, Mitchell H.;
    • Harris, Curtis C.;
    • Helzlsouer, Kathy;
    • Huttenhower, Curtis;
    • Knight, Rob;
    • Kong, Heidi H.;
    • Lai, Gabriel Y.;
    • Hutchinson, Diane Leigh Smith;
    • Le Marchand, Loic;
    • Li, Hongzhe;
    • Orlich, Michael J.;
    • Shi, Jianxin;
    • Truelove, Ann
    Publication type:
    Article
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    Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

    Published in:
    Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0582-5
    By:
    • Meisel, Jacquelyn S.;
    • Nasko, Daniel J.;
    • Brubach, Brian;
    • Cepeda-Espinoza, Victoria;
    • Chopyk, Jessica;
    • Corrada-Bravo, Héctor;
    • Fedarko, Marcus;
    • Ghurye, Jay;
    • Javkar, Kiran;
    • Olson, Nathan D.;
    • Shah, Nidhi;
    • Allard, Sarah M.;
    • Bazinet, Adam L.;
    • Bergman, Nicholas H.;
    • Brown, Alexis;
    • Caporaso, J. Gregory;
    • Conlan, Sean;
    • DiRuggiero, Jocelyne;
    • Forry, Samuel P.;
    • Hasan, Nur A.
    Publication type:
    Article
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    The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States.

    Published in:
    Cancer (0008543X), 2025, v. 131, n. 6, p. 1, doi. 10.1002/cncr.35802
    By:
    • Vogtmann, Emily;
    • Yano, Yukiko;
    • Zouiouich, Semi;
    • Hua, Xing;
    • Wan, Yunhu;
    • Purandare, Vaishnavi;
    • Li, Shilan;
    • Dagnall, Casey L.;
    • Jones, Kristine;
    • Hicks, Belynda D.;
    • Hutchinson, Amy;
    • Caporaso, J. Gregory;
    • Wheeler, William;
    • Huang, Wen‐Yi;
    • Freedman, Neal D.;
    • Sandler, Dale P.;
    • Beane Freeman, Laura E.;
    • Liao, Linda M.;
    • Gail, Mitchell H.;
    • Shi, Jianxin
    Publication type:
    Article
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    The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies.

    Published in:
    JNCI: Journal of the National Cancer Institute, 2022, v. 114, n. 11, p. 1501, doi. 10.1093/jnci/djac149
    By:
    • Vogtmann, Emily;
    • Hua, Xing;
    • Yu, Guoqin;
    • Purandare, Vaishnavi;
    • Hullings, Autumn G;
    • Shao, Dantong;
    • Wan, Yunhu;
    • Li, Shilan;
    • Dagnall, Casey L;
    • Jones, Kristine;
    • Hicks, Belynda D;
    • Hutchinson, Amy;
    • Caporaso, J Gregory;
    • Wheeler, William;
    • Sandler, Dale P;
    • Freeman, Laura E Beane;
    • Liao, Linda M;
    • Huang, Wen-Yi;
    • Freedman, Neal D;
    • Caporaso, Neil E
    Publication type:
    Article
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    Phylogenetic organization of bacterial activity.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 9, p. 2336, doi. 10.1038/ismej.2016.28
    By:
    • Morrissey, Ember M;
    • Mau, Rebecca L;
    • Schwartz, Egbert;
    • Caporaso, J Gregory;
    • Dijkstra, Paul;
    • van Gestel, Natasja;
    • Koch, Benjamin J;
    • Liu, Cindy M;
    • Hayer, Michaela;
    • McHugh, Theresa A;
    • Marks, Jane C;
    • Price, Lance B;
    • Hungate, Bruce A
    Publication type:
    Article
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    Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 1, p. 50, doi. 10.1038/ismej.2012.79
    By:
    • Kirk Harris, J;
    • Gregory Caporaso, J;
    • Walker, Jeffrey J;
    • Spear, John R;
    • Gold, Nicholas J;
    • Robertson, Charles E;
    • Hugenholtz, Philip;
    • Goodrich, Julia;
    • McDonald, Daniel;
    • Knights, Dan;
    • Marshall, Paul;
    • Tufo, Henry;
    • Knight, Rob;
    • Pace, Norman R
    Publication type:
    Article
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    Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 8, p. 1621, doi. 10.1038/ismej.2012.8
    By:
    • Caporaso, J Gregory;
    • Lauber, Christian L;
    • Walters, William A;
    • Berg-Lyons, Donna;
    • Huntley, James;
    • Fierer, Noah;
    • Owens, Sarah M;
    • Betley, Jason;
    • Fraser, Louise;
    • Bauer, Markus;
    • Gormley, Niall;
    • Gilbert, Jack A;
    • Smith, Geoff;
    • Knight, Rob
    Publication type:
    Article
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    Defining seasonal marine microbial community dynamics.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 2, p. 298, doi. 10.1038/ismej.2011.107
    By:
    • Gilbert, Jack A;
    • Steele, Joshua A;
    • Caporaso, J Gregory;
    • Steinbrück, Lars;
    • Reeder, Jens;
    • Temperton, Ben;
    • Huse, Susan;
    • McHardy, Alice C;
    • Knight, Rob;
    • Joint, Ian;
    • Somerfield, Paul;
    • Fuhrman, Jed A;
    • Field, Dawn
    Publication type:
    Article
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    A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.

    Published in:
    Molecular Ecology Resources, 2024, v. 24, n. 5, p. 1, doi. 10.1111/1755-0998.13847
    By:
    • Hakimzadeh, Ali;
    • Abdala Asbun, Alejandro;
    • Albanese, Davide;
    • Bernard, Maria;
    • Buchner, Dominik;
    • Callahan, Benjamin;
    • Caporaso, J. Gregory;
    • Curd, Emily;
    • Djemiel, Christophe;
    • Brandström Durling, Mikael;
    • Elbrecht, Vasco;
    • Gold, Zachary;
    • Gweon, Hyun S.;
    • Hajibabaei, Mehrdad;
    • Hildebrand, Falk;
    • Mikryukov, Vladimir;
    • Normandeau, Eric;
    • Özkurt, Ezgi;
    • M. Palmer, Jonathan;
    • Pascal, Géraldine
    Publication type:
    Article
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    Oral Microbiome Profile of the US Population.

    Published in:
    JAMA Network Open, 2025, v. 8, n. 5, p. e258283, doi. 10.1001/jamanetworkopen.2025.8283
    By:
    • Chaturvedi, Anil K.;
    • Vogtmann, Emily;
    • Shi, Jianxin;
    • Yano, Yukiko;
    • Blaser, Martin J.;
    • Bokulich, Nicholas A.;
    • Caporaso, J. Gregory;
    • Gillison, Maura L.;
    • Graubard, Barry I.;
    • Hua, Xing;
    • Hullings, Autumn G.;
    • Kahle, Lisa;
    • Knight, Rob;
    • Li, Shilan;
    • McLean, Jody;
    • Purandare, Vaishnavi;
    • Wan, Yunhu;
    • Freedman, Neal D.;
    • Abnet, Christian C.
    Publication type:
    Article
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    Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study.

    Published in:
    Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-016-0225-7
    By:
    • Dae-Wook Kang;
    • Adams, James B.;
    • Gregory, Ann C.;
    • Borody, Thomas;
    • Chittick, Lauren;
    • Fasano, Alessio;
    • Khoruts, Alexander;
    • Geis, Elizabeth;
    • Maldonado, Juan;
    • McDonough-Means, Sharon;
    • Pollard, Elena L.;
    • Roux, Simon;
    • Sadowsky, Michael J.;
    • Lipson, Karen Schwarzberg;
    • Sullivan, Matthew B.;
    • Caporaso, J. Gregory;
    • Krajmalnik-Brown, Rosa
    Publication type:
    Article
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    Temporal variability is a personalized feature of the human microbiome.

    Published in:
    Genome Biology, 2014, v. 15, n. 12, p. 531, doi. 10.1186/s13059-014-0531-y
    By:
    • Flores, Gilberto E;
    • Caporaso, J Gregory;
    • Henley, Jessica B;
    • Rideout, Jai Ram;
    • Domogala, Daniel;
    • Chase, John;
    • Leff, Jonathan W;
    • Vázquez-Baeza, Yoshiki;
    • Gonzalez, Antonio;
    • Knight, Rob;
    • Dunn, Robert R;
    • Fierer, Noah
    Publication type:
    Article
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    Moving pictures of the human microbiome.

    Published in:
    Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r50
    By:
    • Caporaso, J. Gregory;
    • Lauber, Christian L.;
    • Costello, Elizabeth K.;
    • Berg-Lyons, Donna;
    • Gonzalez, Antonio;
    • Stombaugh, Jesse;
    • Knights, Dan;
    • Gajer, Pawel;
    • Ravel, Jacques;
    • Fierer, Noah;
    • Gordon, Jeffrey I.;
    • Knight, Rob
    Publication type:
    Article
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    QIIME allows analysis of high-throughput community sequencing data.

    Published in:
    2010
    By:
    • Caporaso, J. Gregory;
    • Kuczynski, Justin;
    • Stombaugh, Jesse;
    • Bittinger, Kyle;
    • Bushman, Frederic D.;
    • Costello, Elizabeth K.;
    • Fierer, Noah;
    • Peña, Antonio Gonzalez;
    • Goodrich, Julia K.;
    • Gordon, Jeffrey I.;
    • Huttley, Gavin A.;
    • Kelley, Scott T.;
    • Knights, Dan;
    • Koenig, Jeremy E.;
    • Ley, Ruth E.;
    • Lozupone, Catherine A.;
    • McDonald, Daniel;
    • Muegge, Brian D.;
    • Pirrung, Meg;
    • Reeder, Jens
    Publication type:
    Letter