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Best practices to evaluate the impact of biomedical research software—metric collection beyond citations.
- Published in:
- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae469
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- Article
Impact of Different Exercise Modalities on the Human Gut Microbiome.
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- Sports (2075-4663), 2021, v. 9, n. 2, p. 14, doi. 10.3390/sports9020014
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- Article
Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16–17, 2017.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0596-z
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- Publication type:
- Article
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0582-5
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- Publication type:
- Article
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0470-z
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- Article
Moving pictures of the human microbiome.
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- Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r50
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- Article
Facilitating bioinformatics reproducibility with QIIME 2 provenance Replay.
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- PLoS Computational Biology, 2023, v. 19, n. 11, p. 1, doi. 10.1371/journal.pcbi.1011676
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- Article
Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).
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- Ecology Letters, 2014, v. 17, n. 8, p. 979, doi. 10.1111/ele.12301
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- Article
Individual diet has sex-dependent effects on vertebrate gut microbiota.
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- Nature Communications, 2014, v. 5, n. 7, p. 4500, doi. 10.1038/ncomms5500
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- Article
Altered Faecal Microbiota Composition and Structure of Ghanaian Children with Acute Gastroenteritis.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 4, p. 3607, doi. 10.3390/ijms24043607
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- Article
Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment.
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- PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009876
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- Article
Human gut microbiome viewed across age and geography.
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- Nature, 2012, v. 486, n. 7402, p. 222, doi. 10.1038/nature11053
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- Article
Designing Inclusive HPV Cancer Vaccines and Increasing Uptake among Native Americans—A Cultural Perspective Review.
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- Current Oncology, 2021, v. 28, n. 5, p. 3705, doi. 10.3390/curroncol28050316
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- Article
Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 11, p. 2515, doi. 10.1038/ismej.2015.64
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- Article
A meta-analysis of changes in bacterial and archaeal communities with time.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 8, p. 1493, doi. 10.1038/ismej.2013.54
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- Publication type:
- Article
Collaborative cloud-enabled tools allow rapid, reproducible biological insights.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 3, p. 461, doi. 10.1038/ismej.2012.123
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- Article
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 1, p. 50, doi. 10.1038/ismej.2012.79
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- Article
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 8, p. 1621, doi. 10.1038/ismej.2012.8
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- Publication type:
- Article
Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 7, p. 1273, doi. 10.1038/ismej.2011.186
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- Article
The Western English Channel contains a persistent microbial seed bank.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 6, p. 1089, doi. 10.1038/ismej.2011.162
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- Article
Defining seasonal marine microbial community dynamics.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 2, p. 298, doi. 10.1038/ismej.2011.107
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- Article
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 1, p. 94, doi. 10.1038/ismej.2011.82
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- Publication type:
- Article
Examining the global distribution of dominant archaeal populations in soil.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 5, p. 908, doi. 10.1038/ismej.2010.171
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- Article
Soil bacterial and fungal communities across a pH gradient in an arable soil.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 10, p. 1340, doi. 10.1038/ismej.2010.58
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- Article
RAPID PATTERN DEVELOPMENT FOR CONCEPT RECOGNITION SYSTEMS:: APPLICATION TO POINT MUTATIONS.
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- Journal of Bioinformatics & Computational Biology, 2007, v. 5, n. 6, p. 1233, doi. 10.1142/S0219720007003144
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- Article
The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies.
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- JNCI: Journal of the National Cancer Institute, 2022, v. 114, n. 11, p. 1501, doi. 10.1093/jnci/djac149
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- Article
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.
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- Nature Biotechnology, 2013, v. 31, n. 9, p. 814, doi. 10.1038/nbt.2676
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- Article
Oral microbial community composition is associated with pancreatic cancer: A case‐control study in Iran.
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- Cancer Medicine, 2020, v. 9, n. 2, p. 797, doi. 10.1002/cam4.2660
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- Article
Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development.
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- Cancer Medicine, 2019, v. 8, n. 2, p. 617, doi. 10.1002/cam4.1965
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- Publication type:
- Article
Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography.
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- Environmental Microbiology, 2015, v. 17, n. 10, p. 4078, doi. 10.1111/1462-2920.12972
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- Article
The Personal Human Oral Microbiome Obscures the Effects of Treatment on Periodontal Disease.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086708
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- Article
The Ecology of Microbial Communities Associated with <i>Macrocystis pyrifera</i>.
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- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0067480
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- Article
Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs).
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- PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054703
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- Article
Host-Associated and Free-Living Phage Communities Differ Profoundly in Phylogenetic Composition.
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- PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016900
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- Article
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study.
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- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-016-0225-7
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- Article
ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
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- Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0153-6
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- Article
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.
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- Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0081-x
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- Article
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.
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- Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0081-x
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- Article
Diversity, distribution and sources of bacteria in residential kitchens.
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- Environmental Microbiology, 2013, v. 15, n. 2, p. 588, doi. 10.1111/1462-2920.12036
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- Article
Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity.
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- Molecular Ecology, 2014, v. 23, n. 19, p. 4831, doi. 10.1111/mec.12846
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- Article
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
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- Molecular Ecology Resources, 2024, v. 24, n. 5, p. 1, doi. 10.1111/1755-0998.13847
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- Article
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.
- Published in:
- Nature Methods, 2013, v. 10, n. 1, p. 57, doi. 10.1038/nmeth.2276
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- Article
QIIME allows analysis of high-throughput community sequencing data.
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- 2010
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- Publication type:
- Letter
Leptospira in river and soil in a highly endemic area of Ecuador.
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- BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-020-02069-y
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- Publication type:
- Article
Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.
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- GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0133-6
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- Article
Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?
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- Evolutionary Applications, 2020, v. 13, n. 8, p. 1984, doi. 10.1111/eva.12956
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- Article
TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.
- Published in:
- Bioinformatics, 2011, v. 27, n. 21, p. 3067, doi. 10.1093/bioinformatics/btr517
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- Article
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.
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- Bioinformatics, 2011, v. 27, n. 8, p. 1159, doi. 10.1093/bioinformatics/btr087
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- Article
PyNAST: a flexible tool for aligning sequences to a template alignment.
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- Bioinformatics, 2010, v. 26, n. 2, p. 266, doi. 10.1093/bioinformatics/btp636
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- Publication type:
- Article
MutationFinder: a high-performance system for extracting point mutation mentions from text.
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- Bioinformatics, 2007, v. 23, n. 14, p. 1862, doi. 10.1093/bioinformatics/btm235
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- Article