Works by Cannon, William R.

Results: 13

Redox poise in R. rubrum phototrophic growth drives large-scale changes in macromolecular pathways.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pcbi.1013015

By:

Cannon, William R.;
King, Ethan;
Huening, Katherine A.;
North, Justin A.

Publication type:

Article

An approach to learn regulation to maximize growth and entropy production rates in metabolism.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.981866

By:

King, Ethan;
Holzer, Jesse;
North, Justin A.;
Cannon, William R.

Publication type:

Article

MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification.

Published in:

Bioinformatics, 2011, v. 27, n. 21, p. 3072, doi. 10.1093/bioinformatics/btr523

By:

Kalyanaraman, Ananth;
Cannon, William R.;
Latt, Benjamin;
Baxter, Douglas J.

Publication type:

Article

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1677, doi. 10.1093/bioinformatics/btq251

By:

Webb-Robertson, Bobbie-Jo M.;
Cannon, William R.;
Oehmen, Christopher S.;
Shah, Anuj R.;
Gurumoorthi, Vidhya;
Lipton, Mary S.;
Waters, Katrina M.

Publication type:

Article

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1503, doi. 10.1093/bioinformatics/btn218

By:

Bobbie-Jo M. Webb-Robertson;
William R. Cannon;
Christopher S. Oehmen;
Anuj R. Shah;
Vidhya Gurumoorthi;
Mary S. Lipton;
Katrina M. Waters

Publication type:

Article

Improved peptide sequencing using isotope information inherent in tandem mass spectra.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 15, p. 1793, doi. 10.1002/rcm.1119

By:

William R. Cannon;
Kenneth D. Jarman

Publication type:

Article

Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.

Published in:

Bioinformatics, 2004, v. 20, n. 14, p. 2296, doi. 10.1093/bioinformatics/bth242

By:

Alejandro Heredia-Langner;
William R. Cannon;
Kenneth D. Jarman;
Kristin H. Jarman

Publication type:

Article

Simulating Metabolism with Statistical Thermodynamics.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0103582

By:

Cannon, William R.

Publication type:

Article

Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.

Published in:

NPJ Digital Medicine, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41746-019-0193-y

By:

Alber, Mark;
Buganza Tepole, Adrian;
Cannon, William R.;
De, Suvranu;
Dura-Bernal, Salvador;
Garikipati, Krishna;
Karniadakis, George;
Lytton, William W.;
Perdikaris, Paris;
Petzold, Linda;
Kuhl, Ellen

Publication type:

Article

BMX: Biological modelling and interface exchange.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39150-1

By:

Palmer, Bruce J.;
Almgren, Ann S.;
Johnson, Connah G. M.;
Myers, Andrew T.;
Cannon, William R.

Publication type:

Article

Multiscale Modeling Meets Machine Learning: What Can We Learn?

Published in:

Archives of Computational Methods in Engineering, 2021, v. 28, n. 3, p. 1017, doi. 10.1007/s11831-020-09405-5

By:

Peng, Grace C. Y.;
Alber, Mark;
Buganza Tepole, Adrian;
Cannon, William R.;
De, Suvranu;
Dura-Bernal, Savador;
Garikipati, Krishna;
Karniadakis, George;
Lytton, William W.;
Perdikaris, Paris;
Petzold, Linda;
Kuhl, Ellen

Publication type:

Article

Current trends in computational inference from mass spectrometry- based proteomics.

Published in:

Briefings in Bioinformatics, 2007, v. 8, n. 5, p. 304, doi. 10.1093/bib/bbm023

By:

Webb-Robertson, Bobbie-jo M.;
Cannon, William R.

Publication type:

Article

Prediction of Metabolite Concentrations, Rate Constants and Post-Translational Regulation Using Maximum Entropy-Based Simulations with Application to Central Metabolism of Neurospora crassa.

Published in:

Processes, 2018, v. 6, n. 6, p. 63, doi. 10.3390/pr6060063

By:

Cannon, William R.;
Zucker, Jeremy D.;
Baxter, Douglas J.;
Kumar, Neeraj;
Baker, Scott E.;
Hurley, Jennifer M.;
Dunlap, Jay C.

Publication type:

Article