Works by Campino, Susana

Results: 155

A computational method for predicting the most likely evolutionary trajectories in the stepwise accumulation of resistance mutations.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.84756

By:

Eccleston, Ruth Charlotte;
Manko, Emilia;
Campino, Susana;
Clark, Taane G.;
Furnham, Nicholas

Publication type:

Article

G6PD Polymorphisms and Hemolysis After Antimalarial Treatment With Low Single-Dose Primaquine: A Pooled Analysis of Six African Clinical Trials.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.645688

By:

Sepúlveda, Nuno;
Grignard, Lynn;
Curry, Jonathan;
Mahey, Laleta;
Bastiaens, Guido J. H.;
Tiono, Alfred B.;
Okebe, Joseph;
Coulibaly, Sam A.;
Gonçalves, Bronner P.;
Affara, Muna;
Ouédraogo, Alphonse;
Bougouma, Edith C.;
Sanou, Guillaume S.;
Nébié, Issa;
Lanke, Kjerstin;
Sirima, Sodiomon B.;
Dicko, Alassane;
d'Alessandro, Umberto;
Clark, Taane G.;
Campino, Susana

Publication type:

Article

Genome sequencing of Plasmodium malariae identifies continental segregation and mutations associated with reduced pyrimethamine susceptibility.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-55102-3

By:

Ibrahim, Amy;
Mohring, Franziska;
Manko, Emilia;
van Schalkwyk, Donelly A.;
Phelan, Jody E.;
Nolder, Debbie;
Borrmann, Steffen;
Adegnika, Ayola A.;
Di Santi, Silvia Maria;
Alam, Mohammad Shafiul;
Mondal, Dinesh;
Nosten, Francois;
Sutherland, Colin J.;
Moon, Robert W.;
Clark, Taane G.;
Campino, Susana

Publication type:

Article

Genomic analysis of global Plasmodium vivax populations reveals insights into the evolution of drug resistance.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54964-x

By:

Ngwana-Joseph, Gabrielle C.;
Phelan, Jody E.;
Manko, Emilia;
Dombrowski, Jamille G.;
da Silva Santos, Simone;
Suarez-Mutis, Martha;
Vélez-Tobón, Gabriel;
Tobón Castaño, Alberto;
Machado, Ricardo Luiz Dantas;
Marinho, Claudio R. F.;
Nolder, Debbie;
Nosten, François;
Sutherland, Colin J.;
Campino, Susana;
Clark, Taane G.

Publication type:

Article

JC Polyomavirus T-antigen protein expression and the risk of colorectal cancer: Systematic review and meta-analysis of case-control studies.

Published in:

PLoS ONE, 2023, v. 18, n. 3, p. 1, doi. 10.1371/journal.pone.0283642

By:

Kimla, Lenka J.;
Clark, Taane G.;
Banerjee, Sri;
Campino, Susana

Publication type:

Article

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

Published in:

BMC Genetics, 2010, v. 11, p. 25, doi. 10.1186/1471-2156-11-25

By:

Daelemans, Caroline;
Ritchie, Matthew E.;
Smits, Guillaume;
Abu-Amero, Sayeda;
Sudbery, Ian M.;
Forrest, Matthew S.;
Campino, Susana;
Clark, Taane G.;
Stanier, Philip;
Kwiatkowski, Dominic;
Deloukas, Panos;
Dermitzakis, Emmanouil T.;
Tavaré, Simon;
Moore, Gudrun E.;
Dunham, Ian

Publication type:

Article

Serological insights from SARS-CoV-2 heterologous prime and boost responses in Thailand.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-024-84392-2

By:

Ward, Daniel;
Pattarapreeyakul, Lapasrada;
Pitaksalee, Rujiraporn;
Thawong, Naphatcha;
Sawaengdee, Waritta;
Tuntigumthon, Suthida;
Patterson, Catriona;
Tetteh, Kevin;
Campino, Susana;
Dhepakson, Panadda;
Mahasirimongkol, Surakameth;
Clark, Taane G.

Publication type:

Article

Leveraging large-scale Mycobacterium tuberculosis whole genome sequence data to characterise drug-resistant mutations using machine learning and statistical approaches.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-77947-w

By:

Pruthi, Siddharth Sanjay;
Billows, Nina;
Thorpe, Joseph;
Campino, Susana;
Phelan, Jody E.;
Mohareb, Fady;
Clark, Taane G.

Publication type:

Article

Whole genome sequencing analysis of Mycobacterium tuberculosis reveals circulating strain types and drug-resistance mutations in the Philippines.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-70471-x

By:

Wang, Linfeng;
Lim, Dodge R.;
Phelan, Jody E.;
Reyes, Lorenzo T.;
Palparan, Alma G.;
Sanchez, Maria Guileane C.;
Asuncion, Louella Abigail A.;
Tujan, Ma. Angelica A.;
Medado, Inez Andrea P.;
Daga, Chona Mae A.;
Llames, Jo-Hannah S.;
Mitarai, Satoshi;
Murase, Yoshiro;
Morishige, Yuta;
Ang, Concepcion F.;
Malabad, John Carlo M.;
Montoya, Jaime C.;
Hafalla, Julius C.;
Campino, Susana;
Hibberd, Martin L.

Publication type:

Article

Plasmodium falciparum population dynamics in East Africa and genomic surveillance along the Kenya-Uganda border.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-67623-4

By:

Osborne, Ashley;
Mańko, Emilia;
Waweru, Harrison;
Kaneko, Akira;
Kita, Kiyoshi;
Campino, Susana;
Gitaka, Jesse;
Clark, Taane G.

Publication type:

Article

Uncovering the genetic diversity in Aedes aegypti insecticide resistance genes through global comparative genomics.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-64007-6

By:

Spadar, Anton;
Collins, Emma;
Messenger, Louisa A.;
Clark, Taane G.;
Campino, Susana

Publication type:

Article

Genetic diversity and risk factors for the transmission of antimicrobial resistance across human, animals and environmental compartments in East Africa: a review.

Published in:

Antimicrobial Resistance & Infection Control, 2020, v. 9, n. 1, p. 1, doi. 10.1186/s13756-020-00786-7

By:

Katale, Bugwesa Z.;
Misinzo, Gerald;
Mshana, Stephen E.;
Chiyangi, Harriet;
Campino, Susana;
Clark, Taane G.;
Good, Liam;
Rweyemamu, Mark M.;
Matee, Mecky I.

Publication type:

Article

Distinctive genetic structure and selection patterns in Plasmodium vivax from South Asia and East Africa.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23422-3

By:

Benavente, Ernest Diez;
Manko, Emilia;
Phelan, Jody;
Campos, Monica;
Nolder, Debbie;
Fernandez, Diana;
Velez-Tobon, Gabriel;
Castaño, Alberto Tobón;
Dombrowski, Jamille G.;
Marinho, Claudio R. F.;
Aguiar, Anna Caroline C.;
Pereira, Dhelio Batista;
Sriprawat, Kanlaya;
Nosten, Francois;
Moon, Robert;
Sutherland, Colin J.;
Campino, Susana;
Clark, Taane G.

Publication type:

Article

Allelic heterogeneity of G6PD deficiency in West Africa and severe malaria susceptibility.

Published in:

European Journal of Human Genetics, 2009, v. 17, n. 8, p. 1080, doi. 10.1038/ejhg.2009.8

By:

Clark, Taane G.;
Fry, Andrew E.;
Auburn, Sarah;
Campino, Susana;
Diakite, Mahamadou;
Green, Angela;
Richardson, Anna;
Teo, Yik Y.;
Small, Kerrin;
Wilson, Jonathan;
Jallow, Muminatou;
Sisay-Joof, Fatou;
Pinder, Margaret;
Sabeti, Pardis;
Kwiatkowski, Dominic P.;
Rockett, Kirk A.

Publication type:

Article

Differences in the frequency of genetic variants associated with iron imbalance among global populations.

Published in:

PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0235141

By:

Jallow, Momodou W.;
Cerami, Carla;
Clark, Taane G.;
Prentice, Andrew M.;
Campino, Susana

Publication type:

Article

Knockdown resistance mutations in Phlebotomus argentipes sand flies in Bihar, India.

Published in:

Parasites & Vectors, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13071-024-06424-0

By:

Kristan, Mojca;
Hazelgrove, Carlamarita;
Kumar, Kundan;
Kumar, Ashish;
Kumar, Vijay;
Das, Pradeep;
Collins, Emma;
Mark-Carew, Miguella;
Campino, Susana;
Cameron, Mary

Publication type:

Article

Genomic surveillance of Anopheles mosquitoes on the Bijagós Archipelago using custom targeted amplicon sequencing identifies mutations associated with insecticide resistance.

Published in:

Parasites & Vectors, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13071-023-06085-5

By:

Moss, Sophie;
Pretorius, Elizabeth;
Ceesay, Sainey;
Hutchins, Harry;
da Silva, Eunice Teixeira;
Ndiath, Mamadou Ousmane;
Jones, Robert T.;
Vasileva, Hristina;
Phelan, Jody;
Acford-Palmer, Holly;
Collins, Emma;
Rodrigues, Amabelia;
Krishna, Sanjeev;
Clark, Taane G.;
Last, Anna;
Campino, Susana

Publication type:

Article

Genome-wide and fine-resolution association analysis of malaria in West Africa.

Published in:

Nature Genetics, 2009, v. 41, n. 6, p. 657, doi. 10.1038/ng.388

By:

Jallow, Muminatou;
Teo, Yik Ying;
Small, Kerrin S;
Rockett, Kirk A;
Deloukas, Panos;
Clark, Taane G;
Kivinen, Katja;
Bojang, Kalifa A;
Conway, David J;
Pinder, Margaret;
Sirugo, Giorgio;
Sisay-Joof, Fatou;
Usen, Stanley;
Auburn, Sarah;
Bumpstead, Suzannah J;
Campino, Susana;
Coffey, Alison;
Dunham, Andrew;
Fry, Andrew E;
Green, Angela

Publication type:

Article

A comprehensive analysis of drug resistance molecular markers and Plasmodium falciparum genetic diversity in two malaria endemic sites in Mali.

Published in:

Malaria Journal, 2019, v. 18, n. 1, p. 1, doi. 10.1186/s12936-019-2986-5

By:

Diakité, Seidina A. S.;
Traoré, Karim;
Sanogo, Ibrahim;
Clark, Taane G.;
Campino, Susana;
Sangaré, Modibo;
Dabitao, Djeneba;
Dara, Antoine;
Konaté, Drissa S.;
Doucouré, Fousseyni;
Cissé, Amadou;
Keita, Bourama;
Doumbouya, Mory;
Guindo, Merepen A.;
Toure, Mahamoudou B.;
Sogoba, Nafomon;
Doumbia, Seydou;
Awandare, Gordon A.;
Diakité, Mahamadou

Publication type:

Article

Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6577-1

By:

Katale, Bugwesa Z.;
Mbelele, Peter M.;
Lema, Nsiande A.;
Campino, Susana;
Mshana, Stephen E.;
Rweyemamu, Mark M.;
Phelan, Jody E.;
Keyyu, Julius D.;
Majigo, Mtebe;
Mbugi, Erasto V.;
Dockrell, Hazel M.;
Clark, Taane G.;
Matee, Mecky I.;
Mpagama, Stellah

Publication type:

Article

COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04632-y

By:

Phelan, Jody;
Deelder, Wouter;
Ward, Daniel;
Campino, Susana;
Hibberd, Martin L.;
Clark, Taane G.

Publication type:

Article

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites.

Published in:

PLoS Genetics, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pgen.1002992

By:

Amambua-Ngwa, Alfred;
Tetteh, Kevin K. A.;
Manske, Magnus;
Gomez-Escobar, Natalia;
Stewart, Lindsay B.;
Deerhake, M. Elizabeth;
Cheeseman, Ian H.;
Newbold, Christopher I.;
Holder, Anthony A.;
Knuepfer, Ellen;
Janha, Omar;
Jallow, Muminatou;
Campino, Susana;
MacInnis, Bronwyn;
Kwiatkowski, Dominic P.;
Conway, David J.

Publication type:

Article

Identification of Common Genetic Variation That Modulates Alternative Splicing.

Published in:

PLoS Genetics, 2007, v. 3, n. 6, p. e99, doi. 10.1371/journal.pgen.0030099

By:

Hull, Jeremy;
Campino, Susana;
Rowlands, Kate;
Man-Suen Chan;
Copley, Richard R.;
Taylor, Martin S.;
Rockett, Kirk;
Elvidge, Gareth;
Keating, Brendan;
Knight, Julian;
Kwiatkowski, Dominic

Publication type:

Article

Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden.

Published in:

Antibiotics (2079-6382), 2024, v. 13, n. 8, p. 765, doi. 10.3390/antibiotics13080765

By:

Asghar, Muhammad;
Khan, Taj Ali;
Séraphin, Marie Nancy;
Schimke, Lena F.;
Cabral-Marques, Otavio;
Haq, Ihtisham Ul;
Farooqi, Zia-ur-Rehman;
Campino, Susana;
Ullah, Ihsan;
Clark, Taane G.

Publication type:

Article

Longitudinal Immunological Analysis of Portuguese Healthcare Workers Across the COVID-19 Pandemic Reveals Differences in the Humoral Immune Response to Vaccines.

Published in:

Vaccines, 2024, v. 12, n. 12, p. 1358, doi. 10.3390/vaccines12121358

By:

Vilela, Luísa;
Silva, Anabela;
Cruz, Alberta;
Sousa, Madalena;
Costa, Margarida;
Fonseca, Fernando;
Campino, Susana;
Clark, Taane G.;
Miranda, Anabela

Publication type:

Article

Population dynamics and drug resistance mutations in Plasmodium falciparum on the Bijagós Archipelago, Guinea-Bissau.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33176-1

By:

Moss, Sophie;
Mańko, Emilia;
Vasileva, Hristina;
Da Silva, Eunice Teixeira;
Goncalves, Adriana;
Osborne, Ashley;
Phelan, Jody;
Rodrigues, Amabelia;
Djata, Paulo;
D'Alessandro, Umberto;
Mabey, David;
Krishna, Sanjeev;
Last, Anna;
Clark, Taane G.;
Campino, Susana

Publication type:

Article

Identification of two insecticide resistance markers in Ethiopian Anopheles stephensi mosquitoes using a multiplex amplicon sequencing assay.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32336-7

By:

Acford-Palmer, Holly;
Phelan, Jody E.;
Tadesse, Fitsum G.;
Kristan, Mojca;
Collins, Emma;
Spadar, Anton;
Walker, Thomas;
Bousema, Teun;
Messenger, Louisa A.;
Clark, Taane G.;
Campino, Susana

Publication type:

Article

Towards environmental detection, quantification, and molecular characterization of Anopheles stephensi and Aedes aegypti from experimental larval breeding sites.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29657-y

By:

Kristan, Mojca;
Acford-Palmer, Holly;
Campos, Monica Oliveira;
Collins, Emma L.;
Phelan, Jody;
Portwood, Natalie M.;
Pelloquin, Bethanie;
Clarke, Sian;
Lines, Jo;
Clark, Taane G.;
Walker, Thomas;
Campino, Susana;
Messenger, Louisa A.

Publication type:

Article

Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29368-4

By:

Turkiewicz, Anna;
Manko, Emilia;
Oresegun, Damiola R.;
Nolder, Debbie;
Spadar, Anton;
Sutherland, Colin J.;
Cox-Singh, Janet;
Moon, Robert W.;
Lau, Yee-Ling;
Campino, Susana;
Clark, Taane G.

Publication type:

Article

Large-scale genomic analysis of Mycobacterium tuberculosis reveals extent of target and compensatory mutations linked to multi-drug resistant tuberculosis.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-27516-4

By:

Napier, Gary;
Campino, Susana;
Phelan, Jody E.;
Clark, Taane G.

Publication type:

Article

Deep learning-derived cardiovascular age shares a genetic basis with other cardiac phenotypes.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-27254-z

By:

Libiseller-Egger, Julian;
Phelan, Jody E.;
Attia, Zachi I.;
Benavente, Ernest Diez;
Campino, Susana;
Friedman, Paul A.;
Lopez-Jimenez, Francisco;
Leon, David A.;
Clark, Taane G.

Publication type:

Article

Geographical classification of malaria parasites through applying machine learning to whole genome sequence data.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-25568-6

By:

Deelder, Wouter;
Manko, Emilia;
Phelan, Jody E.;
Campino, Susana;
Palla, Luigi;
Clark, Taane G.

Publication type:

Article

Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17996-1

By:

Spadar, Anton;
Phelan, Jody;
Elias, Rita;
Modesto, Ana;
Caneiras, Cátia;
Marques, Cátia;
Lito, Luís;
Pinto, Margarida;
Cavaco-Silva, Patrícia;
Ferreira, Helena;
Pomba, Constança;
Da Silva, Gabriela J.;
Saavedra, Maria José;
Melo-Cristino, José;
Duarte, Aida;
Campino, Susana;
Perdigão, João;
Clark, Taane G.

Publication type:

Article

Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17995-2

By:

Spadar, Anton;
Perdigão, João;
Campino, Susana;
Clark, Taane G.

Publication type:

Article

Sero-epidemiological study of arbovirus infection following the 2015–2016 Zika virus outbreak in Cabo Verde.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16115-4

By:

Ward, Daniel;
Gomes, Ana Rita;
Tetteh, Kevin K. A.;
Sepúlveda, Nuno;
Gomez, Lara Ferrero;
Campino, Susana;
Clark, Taane G.

Publication type:

Article

Association of the humoral immune response with the inflammatory profile in Plasmodium vivax infections in pregnant women.

Published in:

PLoS Neglected Tropical Diseases, 2024, v. 18, n. 11, p. 1, doi. 10.1371/journal.pntd.0012636

By:

Souza, Rodrigo Medeiros de;
dos Santos, Maria Inês;
Gomes, Laura Cordeiro;
de Melo, Bruna Beatriz Pedroza;
Separovic, Erika Paula Machado;
Murillo, Oscar;
Wunderlich, Gerhard;
Clark, Taane Gregory;
Campino, Susana;
Epiphanio, Sabrina;
Marinho, Claudio Romero Farias;
Dombrowski, Jamille Gregório

Publication type:

Article

Dried Blood Spots (DBS): A suitable alternative to using whole blood samples for diagnostic testing of visceral leishmaniasis in the post-elimination era.

Published in:

PLoS Neglected Tropical Diseases, 2023, v. 17, n. 10, p. 1, doi. 10.1371/journal.pntd.0011680

By:

Ghosh, Prakash;
Chowdhury, Rajashree;
Rahat, Md. Abu;
Hossain, Faria;
Arpha, Nur E;
Kristan, Mojca;
Higgins, Matthew;
El Wahed, Ahmed Abd;
Goto, Yasuyuki;
Islam, M. M. Towhidul;
Campino, Susana;
Cameron, Mary;
Duthie, Malcom S.;
Haque, Rashidul;
Mondal, Dinesh

Publication type:

Article

Comparison of collection methods for Phlebotomus argentipes sand flies to use in a molecular xenomonitoring system for the surveillance of visceral leishmaniasis.

Published in:

PLoS Neglected Tropical Diseases, 2023, v. 17, n. 9, p. 1, doi. 10.1371/journal.pntd.0011200

By:

McIntyre-Nolan, Shannon;
Kumar, Vijay;
Mark-Carew, Miguella;
Kumar, Kundan;
Nightingale, Emily S.;
Dalla Libera Marchiori, Giorgia;
Rogers, Matthew E.;
Kristan, Mojca;
Campino, Susana;
Medley, Graham F.;
Das, Pradeep;
Cameron, Mary M.

Publication type:

Article

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia.

Published in:

Nature Genetics, 2013, v. 45, n. 6, p. 648, doi. 10.1038/ng.2624

By:

Miotto, Olivo;
Almagro-Garcia, Jacob;
Manske, Magnus;
MacInnis, Bronwyn;
Campino, Susana;
Rockett, Kirk A;
Amaratunga, Chanaki;
Lim, Pharath;
Suon, Seila;
Sreng, Sokunthea;
Anderson, Jennifer M;
Duong, Socheat;
Nguon, Chea;
Chuor, Char Meng;
Saunders, David;
Se, Youry;
Lon, Chantap;
Fukuda, Mark M;
Amenga-Etego, Lucas;
Hodgson, Abraham V O

Publication type:

Article

A modified decision tree approach to improve the prediction and mutation discovery for drug resistance in Mycobacterium tuberculosis.

Published in:

BMC Genomics, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12864-022-08291-4

By:

Deelder, Wouter;
Napier, Gary;
Campino, Susana;
Palla, Luigi;
Phelan, Jody;
Clark, Taane G.

Publication type:

Article

SV-Pop: population-based structural variant analysis and visualization.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2718-4

By:

Ravenhall, Matt;
Campino, Susana;
Clark, Taane G.

Publication type:

Article

Association of Malaria Infection During Pregnancy With Head Circumference of Newborns in the Brazilian Amazon.

Published in:

JAMA Network Open, 2019, p. e193300, doi. 10.1001/jamanetworkopen.2019.3300

By:

Dombrowski, Jamille Gregório;
Souza, Rodrigo Medeiros de;
Lima, Flávia Afonso;
Bandeira, Carla Letícia;
Murillo, Oscar;
Costa, Douglas de Sousa;
Peixoto, Erika Paula Machado;
Cunha, Marielton dos Passos;
Zanotto, Paolo Marinho de Andrade;
Bevilacqua, Estela;
Grisotto, Marcos Augusto Grigolin;
Pedroso de Lima, Antonio Carlos;
Singer, Julio da Motta;
Campino, Susana;
Clark, Taane Gregory;
Epiphanio, Sabrina;
Gonçalves, Lígia Antunes;
Marinho, Cláudio Romero Farias

Publication type:

Article

Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applications.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac256

By:

Gómez-González, Paula J;
Campino, Susana;
Phelan, Jody E;
Clark, Taane G

Publication type:

Article

Genomic analysis of Salmonella enterica from Metropolitan Manila abattoirs and markets reveals insights into circulating virulence and antimicrobial resistance genotypes.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2023.1304283

By:

Mora, Jonah Feliza B.;
Meclat, Vanessa Yvonne B.;
Calayag, Alyzza Marie B.;
Campino, Susana;
Hafalla, Julius C. R.;
Hibberd, Martin L.;
Phelan, Jody E.;
Clark, Taane G.;
Rivera, Windell L.

Publication type:

Article

Functional genetic variation in pe/ppe genes contributes to diversity in Mycobacterium tuberculosis lineages and potential interactions with the human host.

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Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1244319

By:

Josefina Gómez-González, Paula;
Grabowska, Anna D.;
Tientcheu, Leopold D.;
Tsolaki, Anthony G.;
Hibberd, Martin L.;
Campino, Susana;
Phelan, Jody E.;
Clark, Taane G.

Publication type:

Article

Genomic and functional portrait of multidrug-resistant, hydrogen sulfide (H<sub>2</sub>S)-producing variants of Escherichia coli.

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Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1206757

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Mazumder, Razib;
Hussain, Arif;
Rahman, Mohammad Mustafizur;
Phelan, Jody E.;
Campino, Susana;
Abdullah, Ahmed;
Clark, Taane G.;
Mondal, Dinesh

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Genome dynamics of high-risk resistant and hypervirulent Klebsiella pneumoniae clones in Dhaka, Bangladesh.

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Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1184196

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Hussain, Arif;
Mazumder, Razib;
Ahmed, Abdullah;
Saima, Umme;
Phelan, Jody E.;
Campino, Susana;
Ahmed, Dilruba;
Asadulghani, Md;
Clark, Taane G.;
Mondal, Dinesh

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De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members.

Published in:

Frontiers in Genetics, 2022, p. 1, doi. 10.3389/fgene.2022.855052

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Oresegun, Damilola R.;
Thorpe, Peter;
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Campino, Susana;
Muh, Fauzi;
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Cox-Singh, Janet

Publication type:

Article

Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36282-w

By:

Phelan, Jody;
Gomez-Gonzalez, Paula Josefina;
Andreu, Nuria;
Omae, Yosuke;
Toyo-Oka, Licht;
Yanai, Hideki;
Miyahara, Reiko;
Nedsuwan, Supalert;
de Sessions, Paola Florez;
Campino, Susana;
Sallah, Neneh;
Parkhill, Julian;
Smittipat, Nat;
Palittapongarnpim, Prasit;
Mushiroda, Taisei;
Kubo, Michiaki;
Tokunaga, Katsushi;
Mahasirimongkol, Surakameth;
Hibberd, Martin L.;
Clark, Taane G.

Publication type:

Article

Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease.

Published in:

Nature Communications, 2023, v. 14, p. 1, doi. 10.1038/s41467-023-36282-w

By:

Phelan, Jody;
Gomez-Gonzalez, Paula Josefina;
Andreu, Nuria;
Omae, Yosuke;
Toyo-Oka, Licht;
Yanai, Hideki;
Miyahara, Reiko;
Nedsuwan, Supalert;
de Sessions, Paola Florez;
Campino, Susana;
Sallah, Neneh;
Parkhill, Julian;
Smittipat, Nat;
Palittapongarnpim, Prasit;
Mushiroda, Taisei;
Kubo, Michiaki;
Tokunaga, Katsushi;
Mahasirimongkol, Surakameth;
Hibberd, Martin L.;
Clark, Taane G.

Publication type:

Article