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Predicting clinical events characterizing the progression of amyotrophic lateral sclerosis via machine learning approaches using routine visits data: a feasibility study.
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- BMC Medical Informatics & Decision Making, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12911-024-02719-5
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- Publication type:
- Article
Deep learning methods to predict amyotrophic lateral sclerosis disease progression.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17805-9
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- Publication type:
- Article
Knowledge Driven Variable Selection (KDVS) - a new approach to enrichment analysis of gene signatures obtained from high-throughput data.
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- Source Code for Biology & Medicine, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1751-0473-8-2
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- Article
Modeling SILAC Data to Assess Protein Turnover in a Cellular Model of Diabetic Nephropathy.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2811, doi. 10.3390/ijms24032811
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- Publication type:
- Article
Better cardiovascular outcomes of type 2 diabetic patients treated with GLP-1 receptor agonists versus DPP-4 inhibitors in clinical practice.
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- Cardiovascular Diabetology, 2020, v. 19, n. 1, p. 1, doi. 10.1186/s12933-020-01049-w
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- Publication type:
- Article
Improved long-term cardiovascular outcomes after intensive versus standard screening of diabetic complications: an observational study.
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- Cardiovascular Diabetology, 2019, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12933-019-0922-1
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- Publication type:
- Article
Management of type 2 diabetes with a treat-to-benefit approach improved long-term cardiovascular outcomes under routine care.
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- Cardiovascular Diabetology, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12933-022-01712-4
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- Article
Leveraging process mining for modeling progression trajectories in amyotrophic lateral sclerosis.
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- BMC Medical Informatics & Decision Making, 2023, v. 22, p. 1, doi. 10.1186/s12911-023-02113-7
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- Article
A Gene Network Simulator to Assess Reverse Engineering Algorithms.
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- Annals of the New York Academy of Sciences, 2009, v. 1158, p. 125, doi. 10.1111/j.1749-6632.2008.03756.x
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- Publication type:
- Article
Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm.
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- Bioinformatics, 2022, v. 38, n. 7, p. 1920, doi. 10.1093/bioinformatics/btac036
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- Publication type:
- Article
Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.
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- Briefings in Bioinformatics, 2012, v. 13, n. 3, p. 269, doi. 10.1093/bib/bbr063
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- Article
Machine learning–based feature selection to search stable microbial biomarkers: application to inflammatory bowel disease.
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- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad083
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- Article
Exposure to dipeptidyl‐peptidase‐4 inhibitors and COVID‐19 among people with type 2 diabetes: A case‐control study.
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- Diabetes, Obesity & Metabolism, 2020, v. 22, n. 10, p. 1946, doi. 10.1111/dom.14097
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- Article
Function-Based Discovery of Significant Transcriptional Temporal Patterns in Insulin Stimulated Muscle Cells.
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- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032391
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- Article
Effect of Size and Heterogeneity of Samples on Biomarker Discovery: Synthetic and Real Data Assessment.
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- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032200
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- Article
The Transcriptional Response in Human Umbilical Vein Endothelial Cells Exposed to Insulin: A Dynamic Gene Expression Approach.
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- PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0014390
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- Article
A Boolean Approach to Linear Prediction for Signaling Network Modeling.
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- PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0012789
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- Publication type:
- Article
Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak.
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- BMC Infectious Diseases, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2334-13-554
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- Article
Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak.
- Published in:
- 2013
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- Publication type:
- journal article
Reconstruction of gene regulatory modules from RNA silencing of IFN-α modulators: experimental set-up and inference method.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2525-5
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- Publication type:
- Article
Confined 3D microenvironment regulates early differentiation in human pluripotent stem cells.
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- Biotechnology & Bioengineering, 2012, v. 109, n. 12, p. 3119, doi. 10.1002/bit.24571
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- Publication type:
- Article
A dynamic probabilistic model of the onset and interaction of cardio-metabolic comorbidities on an ageing adult population.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-61135-x
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- Publication type:
- Article
Identification of a Candidate Gene Set Signature for the Risk of Progression in IgM MGUS to Smoldering/Symptomatic Waldenström Macroglobulinemia (WM) by a Comparative Transcriptome Analysis of B Cells and Plasma Cells.
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- Cancers, 2021, v. 13, n. 8, p. 1837, doi. 10.3390/cancers13081837
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- Article
Nilotinib‐induced bone marrow CD34+/lin‐Ph+ cells early clearance in newly diagnosed CP‐Chronic Myeloid Leukemia: Final report of the PhilosoPhi34 study.
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- European Journal of Haematology, 2021, v. 107, n. 4, p. 436, doi. 10.1111/ejh.13680
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- Article
A rule-based model of insulin signalling pathway.
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- BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0281-4
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- Article
HAPT2D: high accuracy of prediction of T2D with a model combining basic and advanced data depending on availability.
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- European Journal of Endocrinology, 2018, v. 178, n. 4, p. 331, doi. 10.1530/EJE-17-0921
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- Article
Reducing bias in RNA sequencing data: a novel approach to compute counts.
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- BMC Bioinformatics, 2014, v. 15, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-15-S1-S7
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- Publication type:
- Article
Bag of Naïve Bayes: biomarker selection and classification from genome-wide SNP data.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-13-S14-S2
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- Article
Improving biomarker list stability by integration of biological knowledge in the learning process.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2105-13-S4-S22
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- Article
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2105-13-S4-S14
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- Publication type:
- Article
A quantization method based on threshold optimization for microarray short time series.
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- BMC Bioinformatics, 2005, v. 6, p. S11, doi. 10.1186/1471-2105-6-S4-S11
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- Article
Investigating differential abundance methods in microbiome data: A benchmark study.
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- PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010467
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- Article
Changes in micro RNA expression during disease progression in patients with chronic viral hepatitis.
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- Liver International, 2015, v. 35, n. 4, p. 1324, doi. 10.1111/liv.12737
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- Publication type:
- Article
Microarray Demonstrates Different Gene Expression Profiling Signatures Between Waldenström Macroglobulinemia and IgM Monoclonal Gammopathy of Undetermined Significance.
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- Clinical Lymphoma, Myeloma & Leukemia, 2013, v. 13, n. 2, p. 208, doi. 10.1016/j.clml.2013.02.012
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- Article
Exploiting mutual information for the imputation of static and dynamic mixed-type clinical data with an adaptive k-nearest neighbours approach.
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- 2020
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- Publication type:
- journal article
metaSPARSim: a 16S rRNA gene sequencing count data simulator.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-2882-6
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- Article
A Dynamic Bayesian Network model for the simulation of Amyotrophic Lateral Sclerosis progression.
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- BMC Bioinformatics, 2019, v. 20, n. 4, p. 1, doi. 10.1186/s12859-019-2692-x
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- Publication type:
- Article
Comparison of microbiome samples: methods and computational challenges.
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- Briefings in Bioinformatics, 2021, v. 22, n. 1, p. 88, doi. 10.1093/bib/bbaa121
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- Publication type:
- Article
How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives.
- Published in:
- Briefings in Bioinformatics, 2019, p. 1384, doi. 10.1093/bib/bby007
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- Publication type:
- Article
Measuring the diversity of the human microbiota with targeted next-generation sequencing.
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- Briefings in Bioinformatics, 2018, v. 19, n. 4, p. 679, doi. 10.1093/bib/bbw119
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- Publication type:
- Article
A Variable Ranking Method for Machine Learning Models with Correlated Features: In-Silico Validation and Application for Diabetes Prediction.
- Published in:
- Applied Sciences (2076-3417), 2021, v. 11, n. 16, p. 7740, doi. 10.3390/app11167740
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- Publication type:
- Article
Cardiovascular effectiveness of human-based vs. exendin-based glucagon like peptide-1 receptor agonists: a retrospective study in patients with type 2 diabetes.
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- European Journal of Preventive Cardiology, 2021, v. 28, n. 1, p. 22, doi. 10.1093/eurjpc/zwaa081
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- Publication type:
- Article
Time-resolved trajectory of glucose lowering medications and cardiovascular outcomes in type 2 diabetes: a recurrent neural network analysis.
- Published in:
- Cardiovascular Diabetology, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12933-022-01600-x
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- Publication type:
- Article
Cardiovascular outcomes after initiating GLP-1 receptor agonist or basal insulin for the routine treatment of type 2 diabetes: a region-wide retrospective study.
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- Cardiovascular Diabetology, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12933-021-01414-3
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- Article
Predicting functional impairment trajectories in amyotrophic lateral sclerosis: a probabilistic, multifactorial model of disease progression.
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- Journal of Neurology, 2022, v. 269, n. 7, p. 3858, doi. 10.1007/s00415-022-11022-0
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- Publication type:
- Article
Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods.
- Published in:
- Frontiers in Genetics, 2017, p. 1, doi. 10.3389/fgene.2017.00062
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- Article
Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ.
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- Cellular & Molecular Life Sciences, 2010, v. 67, n. 23, p. 4049, doi. 10.1007/s00018-010-0424-5
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- Article
Mycobacterium tuberculosis-induced miR-155 subverts autophagy by targeting ATG3 in human dendritic cells.
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- PLoS Pathogens, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.ppat.1006790
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- Article
FZD6 triggers Wnt–signalling driven by WNT10B<sup>IVS1</sup> expression and highlights new targets in T‐cell acute lymphoblastic leukemia.
- Published in:
- Hematological Oncology, 2021, v. 39, n. 3, p. 364, doi. 10.1002/hon.2840
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- Publication type:
- Article
Nilotinib induced bone marrow CD34+/lin–Ph+ cells early clearance in newly diagnosed CP‐chronic myeloid leukemia.
- Published in:
- American Journal of Hematology, 2018, v. 93, n. 7, p. E162, doi. 10.1002/ajh.25106
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- Publication type:
- Article