Found: 9

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  • Standardized annotation of translated open reading frames.

    Published in:
    2022
    By:
    • Mudge, Jonathan M.;
    • Ruiz-Orera, Jorge;
    • Prensner, John R.;
    • Brunet, Marie A.;
    • Calvet, Ferriol;
    • Jungreis, Irwin;
    • Gonzalez, Jose Manuel;
    • Magrane, Michele;
    • Martinez, Thomas F.;
    • Schulz, Jana Felicitas;
    • Yang, Yucheng T.;
    • Albà, M. Mar;
    • Aspden, Julie L.;
    • Baranov, Pavel V.;
    • Bazzini, Ariel A.;
    • Bruford, Elspeth;
    • Martin, Maria Jesus;
    • Calviello, Lorenzo;
    • Carvunis, Anne-Ruxandra;
    • Chen, Jin
    Publication type:
    Letter

  • Aberrant cortical development is driven by impaired cell cycle and translational control in a DDX3X syndrome model.

    Published in:
    eLife, 2022, p. 1, doi. 10.7554/eLife.78203
    By:
    • Hoye, Mariah L.;
    • Calviello, Lorenzo;
    • Poff, Abigail J.;
    • Ejimogu, Nna-Emeka;
    • Newman, Carly R.;
    • Montgomery, Maya D.;
    • Jianhong Ou;
    • Floor, Stephen N.;
    • Silver, Debra L.
    Publication type:
    Article

  • Quasi-cellular systems: stochastic simulation analysis at nanoscale range.

    Published in:
    BMC Bioinformatics, 2013, v. 14, n. Suppl 7, p. 1, doi. 10.1186/1471-2105-14-S7-S7
    By:
    • Calviello, Lorenzo;
    • Stano, Pasquale;
    • Mavelli, Fabio;
    • Luisi, Pier Luigi;
    • Marangoni, Roberto
    Publication type:
    Article

  • A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X.

    Published in:
    Molecular Systems Biology, 2024, v. 20, n. 3, p. 276, doi. 10.1038/s44320-024-00013-0
    By:
    • Jowhar, Ziad;
    • Xu, Albert;
    • Venkataramanan, Srivats;
    • Dossena, Francesco;
    • Hoye, Mariah L;
    • Silver, Debra L;
    • Floor, Stephen N;
    • Calviello, Lorenzo
    Publication type:
    Article

  • Extensive identification and analysis of conserved small ORFs in animals.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0742-x
    By:
    • Mackowiak, Sebastian D.;
    • Zauber, Henrik;
    • Bielow, Chris;
    • Thie, Denise;
    • Kutz, Kamila;
    • Calviello, Lorenzo;
    • Mastrobuoni, Guido;
    • Rajewsky, Nikolaus;
    • Kempa, Stefan;
    • Selbach, Matthias;
    • Obermayer, Benedikt
    Publication type:
    Article

  • Control of ribosomal protein synthesis by the Microprocessor complex.

    Published in:
    Science Signaling, 2021, v. 14, n. 671, p. 1, doi. 10.1126/scisignal.abd2639
    By:
    • Jiang, Xuan;
    • Prabhakar, Amit;
    • Van der Voorn, Stephanie M.;
    • Ghatpande, Prajakta;
    • Celona, Barbara;
    • Venkataramanan, Srivats;
    • Calviello, Lorenzo;
    • Lin, Chuwen;
    • Wang, Wanpeng;
    • Black, Brian L.;
    • Floor, Stephen N.;
    • Lagna, Giorgio;
    • Hata, Akiko
    Publication type:
    Article

  • DDX3 depletion represses translation of mRNAs with complex 5′ UTRs.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. 9, p. 5336, doi. 10.1093/nar/gkab287
    By:
    • Calviello, Lorenzo;
    • Venkataramanan, Srivats;
    • Rogowski, Karol J;
    • Wyler, Emanuel;
    • Wilkins, Kevin;
    • Tejura, Malvika;
    • Thai, Bao;
    • Krol, Jacek;
    • Filipowicz, Witold;
    • Landthaler, Markus;
    • Floor, Stephen N
    Publication type:
    Article

  • RNA localization is a key determinant of neurite-enriched proteome.

    Published in:
    Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00690-6
    By:
    • Zappulo, Alessandra;
    • van den Bruck, David;
    • Mattioli, Camilla Ciolli;
    • Franke, Vedran;
    • Imami, Koshi;
    • McShane, Erik;
    • Moreno-Estelles, Mireia;
    • Calviello, Lorenzo;
    • Filipchyk, Andrei;
    • Peguero-Sanchez, Esteban;
    • Müller, Thomas;
    • Woehler, Andrew;
    • Birchmeie, Carmen;
    • Merino, Enrique;
    • Rajewsky, Nikolaus;
    • Ohler, Uwe;
    • Mazzoni, Esteban O.;
    • Selbach, Matthias;
    • Akalin, Altuna;
    • Chekulaeva, Marina
    Publication type:
    Article

  • Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14968-9
    By:
    • Chong, Chloe;
    • Müller, Markus;
    • Pak, HuiSong;
    • Harnett, Dermot;
    • Huber, Florian;
    • Grun, Delphine;
    • Leleu, Marion;
    • Auger, Aymeric;
    • Arnaud, Marion;
    • Stevenson, Brian J.;
    • Michaux, Justine;
    • Bilic, Ilija;
    • Hirsekorn, Antje;
    • Calviello, Lorenzo;
    • Simó-Riudalbas, Laia;
    • Planet, Evarist;
    • Lubiński, Jan;
    • Bryśkiewicz, Marta;
    • Wiznerowicz, Maciej;
    • Xenarios, Ioannis
    Publication type:
    Article