Works by Calus, Mario P. L.

Results: 101

Practical Considerations When Using Mendelian Sampling Variances for Selection Decisions in Genomic Selection Programs.

Published in:

Journal of Animal Breeding & Genetics, 2025, v. 142, n. 4, p. 419, doi. 10.1111/jbg.12913

By:

Niehoff, Tobias A. M.;
ten Napel, Jan;
Calus, Mario P. L.

Publication type:

Article

The Effect of Preselection on the Level of Bias and Accuracy in a Broiler Breeder Population, a Simulation Study.

Published in:

Journal of Animal Breeding & Genetics, 2025, v. 142, n. 4, p. 392, doi. 10.1111/jbg.12908

By:

de Hollander, Charlie A.;
Chu, Thinh T.;
Marois, Danye;
Felipe, Vivian B.;
Lopes, Fernando B.;
Calus, Mario P. L.

Publication type:

Article

Economic optimization of full-sib test group size and genotyping effort in a breeding program for Atlantic salmon.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0491-5

By:

Janssen, Kasper;
Saatkamp, Helmut W.;
Calus, Mario P. L.;
Komen, Hans

Publication type:

Article

Validation of genomic predictions for body weight in broilers using crossbred information and considering breed-of-origin of alleles.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0481-7

By:

Duenk, Pascal;
Calus, Mario P. L.;
Wientjes, Yvonne C. J.;
Breen, Vivian P.;
Henshall, John M.;
Hawken, Rachel;
Bijma, Piter

Publication type:

Article

A second-level diagonal preconditioner for single-step SNPBLUP.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. 1, doi. 10.1186/s12711-019-0472-8

By:

Vandenplas, Jeremie;
Calus, Mario P. L.;
Eding, Herwin;
Vuik, Cornelis

Publication type:

Article

Estimating the purebred-crossbred genetic correlation of body weight in broiler chickens with pedigree or genomic relationships.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0447-9

By:

Duenk, Pascal;
Calus, Mario P. L.;
Wientjes, Yvonne C. J.;
Breen, Vivian P.;
Henshall, John M.;
Hawken, Rachel;
Bijma, Piter

Publication type:

Article

Required properties for markers used to calculate unbiased estimates of the genetic correlation between populations.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. 1, doi. 10.1186/s12711-018-0434-6

By:

Wientjes, Yvonne C. J.;
Calus, Mario P. L.;
Duenk, Pascal;
Bijma, Piter

Publication type:

Article

Impact of rare and low-frequency sequence variants on reliability of genomic prediction in dairy cattle.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0432-8

By:

Zhang, Qianqian;
Sahana, Goutam;
Su, Guosheng;
Guldbrandtsen, Bernt;
Lund, Mogens Sandø;
Calus, Mario P. L.

Publication type:

Article

Deflated preconditioned conjugate gradient method for solving single-step BLUP models efficiently.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0429-3

By:

Vandenplas, Jérémie;
Eding, Herwin;
Calus, Mario P. L.;
Vuik, Cornelis

Publication type:

Article

SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0404-z

By:

Calus, Mario P. L.;
Vandenplas, Jérémie

Publication type:

Article

Estimated allele substitution effects underlying genomic evaluation models depend on the scaling of allele counts.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0355-9

By:

Bouwman, Aniek C.;
Hayes, Ben J.;
Calus, Mario P. L.

Publication type:

Article

Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0350-1

By:

Sevillano, Claudia A.;
Vandenplas, Jeremie;
Bastiaansen, John W. M.;
Bergsma, Rob;
Calus, Mario P. L.

Publication type:

Article

Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0336-z

By:

Qianqian Zhang;
Calus, Mario P. L.;
Guldbrandtsen, Bernt;
Lund, Mogens Sandø;
Sahana, Goutam

Publication type:

Article

Prediction of the reliability of genomic breeding values for crossbred performance.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0318-1

By:

Vandenplas, Jérémie;
Windig, Jack J.;
Calus, Mario P. L.

Publication type:

Article

Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein-Friesian cattle.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 2, doi. 10.1186/s12711-016-0274-1

By:

Veerkamp, Roel F.;
Bouwman, Aniek C.;
Schrooten, Chris;
Calus, Mario P. L.

Publication type:

Article

Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0247-4

By:

Alemu, Setegn W.;
Calus, Mario P. L.;
Muir, William M.;
Peeters, Katrijn;
Vereijken, Addie;
Bijma, Piter

Publication type:

Article

Assigning breed origin to alleles in crossbred animals.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0240-y

By:

Vandenplas, Jérémie;
Calus, Mario P. L.;
Sevillano, Claudia A.;
Windig, Jack J.;
Bastiaansen, John W. M.

Publication type:

Article

Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0238-5

By:

Qianqian Zhang;
Guldbrandtsen, Bernt;
Calus, Mario P. L.;
Lund, Mogens Sandø;
Sahana, Goutam

Publication type:

Article

Empirical determination of breed-of-origin of alleles in three-breed cross pigs.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0234-9

By:

Sevillano, Claudia A.;
Vandenplas, Jeremie;
Bastiaansen, John W. M.;
Calus, Mario P. L.

Publication type:

Article

Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0225-x

By:

Calus, Mario P. L.;
Bouwman, Aniek C.;
Schrooten, Chris;
Veerkamp, Roel F.

Publication type:

Article

Whole-genome sequence data uncover loss of genetic diversity due to selection.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0210-4

By:

Eynard, Sonia E.;
Windig, Jack J.;
Hiemstra, Sipke J.;
Calus, Mario P. L.

Publication type:

Article

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle.

Published in:

Genetics Selection Evolution, 2015, v. 47, n. 1, p. 1, doi. 10.1186/s12711-015-0149-x

By:

van Binsbergen, Rianne;
Calus, Mario P. L.;
Bink, Marco C. A. M.;
van Eeuwijk, Fred A.;
Schrooten, Chris;
Veerkamp, Roel F.

Publication type:

Article

Impact of QTL properties on the accuracy of multi-breed genomic prediction.

Published in:

Genetics Selection Evolution, 2015, v. 47, n. 1, p. 1, doi. 10.1186/s12711-015-0124-6

By:

Wientjes, Yvonne C. J.;
Calus, Mario P. L.;
Goddard, Michael E.;
Hayes, Ben J.

Publication type:

Article

Empirical and deterministic accuracies of across-population genomic prediction.

Published in:

Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-014-0086-0

By:

Wientjes, Yvonne C. J.;
Veerkamp, Roel F.;
Bijma, Piter;
Bovenhuis, Henk;
Schrooten, Chris;
Calus, Mario P. L.

Publication type:

Article

Genomic prediction based on data from three layer lines using non-linear regression models.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/s12711-014-0075-3

By:

Heyun Huang;
Windig, Jack J.;
Vereijken, Addie;
Calus, Mario P. L.

Publication type:

Article

A comparison of principal component regression and genomic REML for genomic prediction across populations.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/s12711-014-0060-x

By:

Dadousis, Christos;
Veerkamp, Roel F.;
Heringstad, Bjørg;
Pszczola, Marcin;
Calus, Mario P. L.

Publication type:

Article

Genomic prediction based on data from three layer lines: a comparison between linear methods.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/s12711-014-0057-5

By:

Calus, Mario P. L.;
Heyun Huang;
Vereijken, Addie;
Visscher, Jeroen;
Napel, Jan ten;
Windig, Jack J.

Publication type:

Article

Genomic prediction of breeding values using previously estimated SNP variances.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/s12711-014-0052-x

By:

Calus, Mario P. L.;
Schrooten, Chris;
Veerkamp, Roel F.

Publication type:

Article

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-41

By:

van Binsbergen, Rianne;
Bink, Marco C. A. M.;
Calus, Mario P. L.;
van Eeuwijk, Fred A.;
Hayes, Ben J.;
Hulsegge, Ina;
Veerkamp, Roel F.

Publication type:

Article

Right-hand-side updating for fast computing of genomic breeding values.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-24

By:

Calus, Mario P. L.

Publication type:

Article

Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-6

By:

Bouwman, Aniek C.;
Hickey, John M.;
Calus, Mario P. L.;
Veerkamp, Roel F.

Publication type:

Article

The use of a genomic relationship matrix for breed assignment of cattle breeds: comparison and combination with a machine learning method.

Published in:

Journal of Animal Science, 2023, v. 101, n. 1, p. 1, doi. 10.1093/jas/skad172

By:

Wilmot, Hélène;
Niehoff, Tobias;
Soyeurt, Hélène;
Gengler, Nicolas;
Calus, Mario P. L.

Publication type:

Article

The impact of direct-maternal genetic correlations on international beef cattle evaluations for Limousin weaning weight.

Published in:

Journal of Animal Science, 2021, v. 99, n. 9, p. 1, doi. 10.1093/jas/skab222

By:

Bonifazi, Renzo;
Vandenplas, Jérémie;
ten Napel, Jan;
Veerkamp, Roel F.;
Calus, Mario P. L.

Publication type:

Article

Review: optimizing genomic selection for crossbred performance by model improvement and data collection.

Published in:

Journal of Animal Science, 2021, v. 99, n. 8, p. 1, doi. 10.1093/jas/skab205

By:

Duenk, Pascal;
Bijma, Piter;
Wientjes, Yvonne C. J.;
Calus, Mario P. L.

Publication type:

Article

Variance estimates are similar using pedigree or genomic relationships with or without the use of metafounders or the algorithm for proven and young animals.

Published in:

Journal of Animal Science, 2020, v. 98, n. 3, p. N.PAG, doi. 10.1093/jas/skaa019

By:

Aldridge, Michael N;
Vandenplas, Jérémie;
Bergsma, Rob;
Calus, Mario P L

Publication type:

Article

Genomic prediction for crossbred performance using metafounders 1.

Published in:

Journal of Animal Science, 2019, v. 97, n. 2, p. 548, doi. 10.1093/jas/sky433

By:

Grevenhof, Elizabeth M van;
Vandenplas, Jérémie;
Calus, Mario P L

Publication type:

Article

Corrigendum: Fecal microbial composition associated with variation in feed efficiency in pigs depends on diet and sex.

Published in:

2018

By:

Verschuren, Lisanne M G;
Calus, Mario P L;
Jansman, Alfons J M;
Bergsma, Rob;
Knol, Egbert F;
Gilbert, Hélène;
Zemb, Olivier

Publication type:

Correction Notice

Sparse single-step genomic BLUP in crossbreeding schemes<sup>2</sup>.

Published in:

Journal of Animal Science, 2018, v. 96, n. 6, p. 2060, doi. 10.1093/jas/sky136

By:

Vandenplas, Jérémie;
Calus, Mario P L;
ten Napel, Jan

Publication type:

Article

Fecal microbial composition associated with variation in feed efficiency in pigs depends on diet and sex.

Published in:

Journal of Animal Science, 2018, v. 96, n. 4, p. 1405, doi. 10.1093/jas/sky060

By:

Verschuren, Lisanne M G;
Calus, Mario P L;
Jansman, Alfons J M;
Bergsma, Rob;
Knol, Egbert F;
Gilbert, Hélène;
Zemb, Olivier

Publication type:

Article

Partial least square regression applied to the QTLMAS 2010 dataset.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1753-6561-5-S3-S7

By:

Coster, Albart;
Calus, Mario P. L.

Publication type:

Article

Estimating genomic breeding values and detecting QTL using univariate and bivariate models.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1753-6561-5-S3-S5

By:

Calus, Mario P. L.;
Mulder, Han A.;
Veerkamp, Roel F.

Publication type:

Article

Simultaneous QTL detection and genomic breeding value estimation using high density SNP chips.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.1186/1297-9686-36-3-261

By:

Veerkamp, Roel F.;
Verbyla, Klara L.;
Mulder, Han A.;
Calus, Mario P. L.

Publication type:

Article

QTLMAS 2009: simulated dataset.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.1186/1753-6561-4-S1-S3

By:

Coster, Albart;
Bastiaansen, John W. M.;
Calus, Mario P. L.;
Maliepaard, Chris;
Bink, Marco C. A. M.

Publication type:

Article

Comparison of analyses of the QTLMAS XIII common dataset. II: QTL analysis.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.3382/ps.2008-00317

By:

Maliepaard, Chris;
Bastiaansen, John W. M.;
Calus, Mario P. L.;
Coster, Albart;
Bink, Marco C. A. M.

Publication type:

Article

Comparison of analyses of the QTLMAS XIII common dataset. I: genomic selection.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.1038/nrg701

By:

Bastiaansen, John W. M.;
Bink, Marco C. A. M.;
Coster, Albart;
Maliepaard, Chris;
Calus, Mario P. L.

Publication type:

Article

Estimating genomic breeding values from the QTL-MAS Workshop Data using a single SNP and haplotype/IBD approach.

Published in:

BMC Proceedings, 2009, v. 3, p. 1

By:

Calus, Mario P. L.;
de Roos, Sander P. W.;
Veerkamp, Roel F.

Publication type:

Article

Prediction of additive genetic variances of descendants for complex families based on Mendelian sampling variances.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 11, p. 1, doi. 10.1093/g3journal/jkae205

By:

Niehoff, Tobias A M;
Napel, Jan ten;
Calus, Mario P L

Publication type:

Article

Adding gene transcripts into genomic prediction improves accuracy and reveals sampling time dependence.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac258

By:

Perez, Bruno C.;
Bink, Marco C. A. M.;
Svenson, Karen L.;
Churchill, Gary A.;
Calus, Mario P. L.

Publication type:

Article

Prediction performance of linear models and gradient boosting machine on complex phenotypes in outbred mice.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 4, p. 1, doi. 10.1093/g3journal/jkac039

By:

Perez, Bruno C.;
Bink, Marco C. A. M.;
Svenson, Karen L.;
Churchill, Gary A.;
Calus, Mario P. L.

Publication type:

Article

The Impact of Non-additive Effects on the Genetic Correlation Between Populations.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 2, p. 783, doi. 10.1534/g3.119.400663

By:

Duenk, Pascal;
Bijma, Piter;
Calus, Mario P. L.;
Wientjes, Yvonne C. J.;
van der Werf, Julius H. J.

Publication type:

Article