Works by Calonne, Emilie

Results: 21

The histone demethylase Kdm3a is essential to progression through differentiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7219, doi. 10.1093/nar/gks399

By:

Herzog, Marielle;
Josseaux, Eléonore;
Dedeurwaerder, Sarah;
Calonne, Emilie;
Volkmar, Michael;
Fuks, François

Publication type:

Article

DNA methylation-based immune response signature improves patient diagnosis in multiple cancers.

Published in:

2017

By:

Jeschke, Jana;
Bizet, Martin;
Desmedt, Christine;
Calonne, Emilie;
Dedeurwaerder, Sarah;
Garaud, Soizic;
Koch, Alexander;
Larsimont, Denis;
Salgado, Roberto;
Van den Eynden, Gert;
Gallo, Karen Willard;
Bontempi, Gianluca;
Defrance, Matthieu;
Sotiriou, Christos;
Fuks, François;
Willard Gallo, Karen

Publication type:

journal article

Monocytes undergo multi-step differentiation in mice during oral infection by Toxoplasma gondii.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. 1, doi. 10.1038/s42003-019-0718-6

By:

Detavernier, Aurélie;
Azouz, Abdulkader;
Shehade, Hussein;
Splittgerber, Marion;
Van Maele, Laurye;
Nguyen, Muriel;
Thomas, Séverine;
Achouri, Younes;
Svec, David;
Calonne, Emilie;
Fuks, François;
Oldenhove, Guillaume;
Goriely, Stanislas

Publication type:

Article

Methylglyoxal: a novel upstream regulator of DNA methylation.

Published in:

Journal of Experimental & Clinical Cancer Research (17569966), 2023, v. 42, n. 1, p. 1, doi. 10.1186/s13046-023-02637-w

By:

Dube, Gaurav;
Tiamiou, Assia;
Bizet, Martin;
Boumahd, Yasmine;
Gasmi, Imène;
Crake, Rebekah;
Bellier, Justine;
Nokin, Marie-Julie;
Calonne, Emilie;
Deplus, Rachel;
Wissocq, Tom;
Peulen, Olivier;
Castronovo, Vincent;
Fuks, François;
Bellahcène, Akeila

Publication type:

Article

A comprehensive overview of Infinium HumanMethylation450 data processing.

Published in:

Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 929, doi. 10.1093/bib/bbt054

By:

Dedeurwaerder, Sarah;
Defrance, Matthieu;
Bizet, Martin;
Calonne, Emilie;
Bontempi, Gianluca;
Fuks, François

Publication type:

Article

A multiomics dataset for the study of RNA modifications in human macrophage differentiation and polarisation.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03076-8

By:

Pinello, Natalia;
Song, Renhua;
Lee, Quintin;
Calonne, Emilie;
Larance, Mark;
Fuks, François;
Wong, Justin J. -L.

Publication type:

Article

DNA methylation profiling reveals a predominant immune component in breast cancers.

Published in:

EMBO Molecular Medicine, 2011, v. 3, n. 12, p. 726, doi. 10.1002/emmm.201100801

By:

Dedeurwaerder, Sarah;
Desmedt, Christine;
Calonne, Emilie;
Singhal, Sandeep K.;
Haibe-Kains, Benjamin;
Defrance, Matthieu;
Michiels, Stefan;
Volkmar, Michael;
Deplus, Rachel;
Luciani, Judith;
Lallemand, Françoise;
Larsimont, Denis;
Toussaint, Jérôme;
Haussy, Sandy;
Rothé, Françoise;
Rouas, Ghizlane;
Metzger, Otto;
Majjaj, Samira;
Saini, Kamal;
Putmans, Pascale

Publication type:

Article

The N6-methyladenosine RNA epigenetic modification modulates the amplification of coxsackievirus B1 in human pancreatic beta cells.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2024.1501061

By:

Bonfim, Maressa Fernandes;
Aitchedji, Camille;
Van Goethem, Flore;
Sauvage, Lionel;
Poinsot, Thibault;
Calonne, Emilie;
Deplus, Rachel;
Fuks, François;
Eizirik, Decio L.;
Op de Beeck, Anne

Publication type:

Article

Citrullination of DNMT3A by PADI4 regulates its stability and controls DNA methylation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8285, doi. 10.1093/nar/gku522

By:

Deplus, Rachel;
Denis, Hélène;
Putmans, Pascale;
Calonne, Emilie;
Fourrez, Marie;
Yamamoto, Kazuhiko;
Suzuki, Akari;
Fuks, François

Publication type:

Article

TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS.

Published in:

EMBO Journal, 2013, v. 32, n. 5, p. 645, doi. 10.1038/emboj.2012.357

By:

Deplus, Rachel;
Delatte, Benjamin;
Schwinn, Marie K;
Defrance, Matthieu;
Méndez, Jacqui;
Murphy, Nancy;
Dawson, Mark A;
Volkmar, Michael;
Putmans, Pascale;
Calonne, Emilie;
Shih, Alan H;
Levine, Ross L;
Bernard, Olivier;
Mercher, Thomas;
Solary, Eric;
Urh, Marjeta;
Daniels, Danette L;
Fuks, François

Publication type:

Article

DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients.

Published in:

EMBO Journal, 2012, v. 31, n. 6, p. 1405, doi. 10.1038/emboj.2011.503

By:

Volkmar, Michael;
Dedeurwaerder, Sarah;
Cunha, Daniel A;
Ndlovu, Matladi N;
Defrance, Matthieu;
Deplus, Rachel;
Calonne, Emilie;
Volkmar, Ute;
Igoillo-Esteve, Mariana;
Naamane, Najib;
Del Guerra, Silvia;
Masini, Matilde;
Bugliani, Marco;
Marchetti, Piero;
Cnop, Miriam;
Eizirik, Decio L;
Fuks, François

Publication type:

Article

Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18729-6

By:

Lan, Jie;
Rajan, Nicholas;
Bizet, Martin;
Penning, Audrey;
Singh, Nitesh K.;
Guallar, Diana;
Calonne, Emilie;
Li Greci, Andrea;
Bonvin, Elise;
Deplus, Rachel;
Hsu, Phillip J.;
Nachtergaele, Sigrid;
Ma, Chengjie;
Song, Renhua;
Fuentes-Iglesias, Alejandro;
Hassabi, Bouchra;
Putmans, Pascale;
Mies, Frédérique;
Menschaert, Gerben;
Wong, Justin J. L.

Publication type:

Article

Dietary Flavanols Modulate the Transcription of Genes Associated with Cardiovascular Pathology without Changes in Their DNA Methylation State.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095527

By:

Milenkovic, Dragan;
Vanden Berghe, Wim;
Boby, Céline;
Leroux, Christine;
Declerck, Ken;
Szarc vel Szic, Katarzyna;
Heyninck, Karen;
Laukens, Kris;
Bizet, Martin;
Defrance, Matthieu;
Dedeurwaerder, Sarah;
Calonne, Emilie;
Fuks, Francois;
Haegeman, Guy;
Haenen, Guido R. M. M.;
Bast, Aalt;
Weseler, Antje R.

Publication type:

Article

Aberrant Promoter Methylation and Expression of UTF1 during Cervical Carcinogenesis.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042704

By:

Guenin, Samuel;
Mouallif, Mustapha;
Deplus, Rachel;
Lampe, Xavier;
Krusy, Nathalie;
Calonne, Emilie;
Delbecque, Katty;
Kridelka, Frederic;
Fuks, François;
Ennaji, My Mustapha;
Delvenne, Philippe;
Castresana, Javier S.

Publication type:

Article

The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes.

Published in:

eLife, 2018, p. 1, doi. 10.7554/eLife.30496

By:

Serroukh, Yasmina;
Gu-Trantien, Chunyan;
Kashani, Baharak Hooshiar;
Defrance, Matthieu;
Thien-Phong Vu Manh;
Azouz, Abdulkader;
Detavernier, Aurélie;
Hoyois, Alice;
Das, Jishnu;
Bizet, Martin;
Pollet, Emeline;
Tabbuso, Tressy;
Calonne, Emilie;
van Gisbergen, Klaas;
Dalod, Marc;
Fuks, François;
Goriely, Stanislas;
Marchant, Arnaud

Publication type:

Article

Genome-wide hydroxymethylcytosine pattern changes in response to oxidative stress.

Published in:

Scientific Reports, 2015, p. 12714, doi. 10.1038/srep12714

By:

Delatte, Benjamin;
Jeschke, Jana;
Defrance, Matthieu;
Bachman, Martin;
Creppe, Catherine;
Calonne, Emilie;
Bizet, Martin;
Deplus, Rachel;
Marroquí, Laura;
Libin, Myriam;
Ravichandran, Mirunalini;
Mascart, Françoise;
Eizirik, Decio L.;
Murrell, Adele;
Jurkowski, Tomasz P.;
Fuks, François

Publication type:

Article

EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11233-6

By:

Istaces, Nicolas;
Splittgerber, Marion;
Lima Silva, Viviana;
Nguyen, Muriel;
Thomas, Séverine;
Le, Aurore;
Achouri, Younes;
Calonne, Emilie;
Defrance, Matthieu;
Fuks, François;
Goriely, Stanislas;
Azouz, Abdulkader

Publication type:

Article

Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods.

Published in:

Epigenetics, 2022, v. 17, n. 13, p. 2434, doi. 10.1080/15592294.2022.2135201

By:

Bizet, Martin;
Defrance, Matthieu;
Calonne, Emilie;
Bontempi, Gianluca;
Sotiriou, Christos;
Fuks, François;
Jeschke, Jana

Publication type:

Article

Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods.

Published in:

Epigenetics, 2022, v. 17, n. 12, p. 2434, doi. 10.1080/15592294.2022.2135201

By:

Bizet, Martin;
Defrance, Matthieu;
Calonne, Emilie;
Bontempi, Gianluca;
Sotiriou, Christos;
Fuks, François;
Jeschke, Jana

Publication type:

Article

The chromatin remodelling protein LSH/HELLS regulates the amount and distribution of DNA hydroxymethylation in the genome.

Published in:

Epigenetics, 2022, v. 17, n. 4, p. 422, doi. 10.1080/15592294.2021.1917152

By:

De Dieuleveult, Maud;
Bizet, Martin;
Colin, Laurence;
Calonne, Emilie;
Bachman, Martin;
Li, Chao;
Stancheva, Irina;
Miotto, Benoit;
Fuks, François;
Deplus, Rachel

Publication type:

Article

Dynamic changes in RNA m<sup>6</sup>A and 5 hmC influence gene expression programs during macrophage differentiation and polarisation.

Published in:

Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05261-9

By:

Pinello, Natalia;
Song, Renhua;
Lee, Quintin;
Calonne, Emilie;
Duan, Kun-Long;
Wong, Emilie;
Tieng, Jessica;
Mehravar, Majid;
Rong, Bowen;
Lan, Fei;
Roediger, Ben;
Ma, Cheng-Jie;
Yuan, Bi-Feng;
Rasko, John E. J.;
Larance, Mark;
Ye, Dan;
Fuks, François;
Wong, Justin J.-L.

Publication type:

Article