Works by Calonne, Emilie

Results: 21

A multiomics dataset for the study of RNA modifications in human macrophage differentiation and polarisation.
Published in:
Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03076-8
By:
- Pinello, Natalia;
- Song, Renhua;
- Lee, Quintin;
- Calonne, Emilie;
- Larance, Mark;
- Fuks, François;
- Wong, Justin J. -L.
Publication type:
Article
Monocytes undergo multi-step differentiation in mice during oral infection by Toxoplasma gondii.
Published in:
Communications Biology, 2019, v. 2, n. 1, p. 1, doi. 10.1038/s42003-019-0718-6
By:
- Detavernier, Aurélie;
- Azouz, Abdulkader;
- Shehade, Hussein;
- Splittgerber, Marion;
- Van Maele, Laurye;
- Nguyen, Muriel;
- Thomas, Séverine;
- Achouri, Younes;
- Svec, David;
- Calonne, Emilie;
- Fuks, François;
- Oldenhove, Guillaume;
- Goriely, Stanislas
Publication type:
Article
Methylglyoxal: a novel upstream regulator of DNA methylation.
Published in:
Journal of Experimental & Clinical Cancer Research (17569966), 2023, v. 42, n. 1, p. 1, doi. 10.1186/s13046-023-02637-w
By:
- Dube, Gaurav;
- Tiamiou, Assia;
- Bizet, Martin;
- Boumahd, Yasmine;
- Gasmi, Imène;
- Crake, Rebekah;
- Bellier, Justine;
- Nokin, Marie-Julie;
- Calonne, Emilie;
- Deplus, Rachel;
- Wissocq, Tom;
- Peulen, Olivier;
- Castronovo, Vincent;
- Fuks, François;
- Bellahcène, Akeila
Publication type:
Article
Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods.
Published in:
Epigenetics, 2022, v. 17, n. 13, p. 2434, doi. 10.1080/15592294.2022.2135201
By:
- Bizet, Martin;
- Defrance, Matthieu;
- Calonne, Emilie;
- Bontempi, Gianluca;
- Sotiriou, Christos;
- Fuks, François;
- Jeschke, Jana
Publication type:
Article
Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods.
Published in:
Epigenetics, 2022, v. 17, n. 12, p. 2434, doi. 10.1080/15592294.2022.2135201
By:
- Bizet, Martin;
- Defrance, Matthieu;
- Calonne, Emilie;
- Bontempi, Gianluca;
- Sotiriou, Christos;
- Fuks, François;
- Jeschke, Jana
Publication type:
Article
The chromatin remodelling protein LSH/HELLS regulates the amount and distribution of DNA hydroxymethylation in the genome.
Published in:
Epigenetics, 2022, v. 17, n. 4, p. 422, doi. 10.1080/15592294.2021.1917152
By:
- De Dieuleveult, Maud;
- Bizet, Martin;
- Colin, Laurence;
- Calonne, Emilie;
- Bachman, Martin;
- Li, Chao;
- Stancheva, Irina;
- Miotto, Benoit;
- Fuks, François;
- Deplus, Rachel
Publication type:
Article
TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS.
Published in:
EMBO Journal, 2013, v. 32, n. 5, p. 645, doi. 10.1038/emboj.2012.357
By:
- Deplus, Rachel;
- Delatte, Benjamin;
- Schwinn, Marie K;
- Defrance, Matthieu;
- Méndez, Jacqui;
- Murphy, Nancy;
- Dawson, Mark A;
- Volkmar, Michael;
- Putmans, Pascale;
- Calonne, Emilie;
- Shih, Alan H;
- Levine, Ross L;
- Bernard, Olivier;
- Mercher, Thomas;
- Solary, Eric;
- Urh, Marjeta;
- Daniels, Danette L;
- Fuks, François
Publication type:
Article
DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients.
Published in:
EMBO Journal, 2012, v. 31, n. 6, p. 1405, doi. 10.1038/emboj.2011.503
By:
- Volkmar, Michael;
- Dedeurwaerder, Sarah;
- Cunha, Daniel A;
- Ndlovu, Matladi N;
- Defrance, Matthieu;
- Deplus, Rachel;
- Calonne, Emilie;
- Volkmar, Ute;
- Igoillo-Esteve, Mariana;
- Naamane, Najib;
- Del Guerra, Silvia;
- Masini, Matilde;
- Bugliani, Marco;
- Marchetti, Piero;
- Cnop, Miriam;
- Eizirik, Decio L;
- Fuks, François
Publication type:
Article
A comprehensive overview of Infinium HumanMethylation450 data processing.
Published in:
Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 929, doi. 10.1093/bib/bbt054
By:
- Dedeurwaerder, Sarah;
- Defrance, Matthieu;
- Bizet, Martin;
- Calonne, Emilie;
- Bontempi, Gianluca;
- Fuks, François
Publication type:
Article
Genome-wide hydroxymethylcytosine pattern changes in response to oxidative stress.
Published in:
Scientific Reports, 2015, p. 12714, doi. 10.1038/srep12714
By:
- Delatte, Benjamin;
- Jeschke, Jana;
- Defrance, Matthieu;
- Bachman, Martin;
- Creppe, Catherine;
- Calonne, Emilie;
- Bizet, Martin;
- Deplus, Rachel;
- Marroquí, Laura;
- Libin, Myriam;
- Ravichandran, Mirunalini;
- Mascart, Françoise;
- Eizirik, Decio L.;
- Murrell, Adele;
- Jurkowski, Tomasz P.;
- Fuks, François
Publication type:
Article
DNA methylation-based immune response signature improves patient diagnosis in multiple cancers.
Published in:
2017
By:
- Jeschke, Jana;
- Bizet, Martin;
- Desmedt, Christine;
- Calonne, Emilie;
- Dedeurwaerder, Sarah;
- Garaud, Soizic;
- Koch, Alexander;
- Larsimont, Denis;
- Salgado, Roberto;
- Van den Eynden, Gert;
- Gallo, Karen Willard;
- Bontempi, Gianluca;
- Defrance, Matthieu;
- Sotiriou, Christos;
- Fuks, François;
- Willard Gallo, Karen
Publication type:
journal article
Dynamic changes in RNA m<sup>6</sup>A and 5 hmC influence gene expression programs during macrophage differentiation and polarisation.
Published in:
Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05261-9
By:
- Pinello, Natalia;
- Song, Renhua;
- Lee, Quintin;
- Calonne, Emilie;
- Duan, Kun-Long;
- Wong, Emilie;
- Tieng, Jessica;
- Mehravar, Majid;
- Rong, Bowen;
- Lan, Fei;
- Roediger, Ben;
- Ma, Cheng-Jie;
- Yuan, Bi-Feng;
- Rasko, John E. J.;
- Larance, Mark;
- Ye, Dan;
- Fuks, François;
- Wong, Justin J.-L.
Publication type:
Article
EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11233-6
By:
- Istaces, Nicolas;
- Splittgerber, Marion;
- Lima Silva, Viviana;
- Nguyen, Muriel;
- Thomas, Séverine;
- Le, Aurore;
- Achouri, Younes;
- Calonne, Emilie;
- Defrance, Matthieu;
- Fuks, François;
- Goriely, Stanislas;
- Azouz, Abdulkader
Publication type:
Article
The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes.
Published in:
eLife, 2018, p. 1, doi. 10.7554/eLife.30496
By:
- Serroukh, Yasmina;
- Gu-Trantien, Chunyan;
- Kashani, Baharak Hooshiar;
- Defrance, Matthieu;
- Thien-Phong Vu Manh;
- Azouz, Abdulkader;
- Detavernier, Aurélie;
- Hoyois, Alice;
- Das, Jishnu;
- Bizet, Martin;
- Pollet, Emeline;
- Tabbuso, Tressy;
- Calonne, Emilie;
- van Gisbergen, Klaas;
- Dalod, Marc;
- Fuks, François;
- Goriely, Stanislas;
- Marchant, Arnaud
Publication type:
Article
Citrullination of DNMT3A by PADI4 regulates its stability and controls DNA methylation.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 13, p. 8285, doi. 10.1093/nar/gku522
By:
- Deplus, Rachel;
- Denis, Hélène;
- Putmans, Pascale;
- Calonne, Emilie;
- Fourrez, Marie;
- Yamamoto, Kazuhiko;
- Suzuki, Akari;
- Fuks, François
Publication type:
Article
The histone demethylase Kdm3a is essential to progression through differentiation.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 15, p. 7219, doi. 10.1093/nar/gks399
By:
- Herzog, Marielle;
- Josseaux, Eléonore;
- Dedeurwaerder, Sarah;
- Calonne, Emilie;
- Volkmar, Michael;
- Fuks, François
Publication type:
Article
DNA methylation profiling reveals a predominant immune component in breast cancers.
Published in:
EMBO Molecular Medicine, 2011, v. 3, n. 12, p. 726, doi. 10.1002/emmm.201100801
By:
- Dedeurwaerder, Sarah;
- Desmedt, Christine;
- Calonne, Emilie;
- Singhal, Sandeep K.;
- Haibe-Kains, Benjamin;
- Defrance, Matthieu;
- Michiels, Stefan;
- Volkmar, Michael;
- Deplus, Rachel;
- Luciani, Judith;
- Lallemand, Françoise;
- Larsimont, Denis;
- Toussaint, Jérôme;
- Haussy, Sandy;
- Rothé, Françoise;
- Rouas, Ghizlane;
- Metzger, Otto;
- Majjaj, Samira;
- Saini, Kamal;
- Putmans, Pascale
Publication type:
Article
The N6-methyladenosine RNA epigenetic modification modulates the amplification of coxsackievirus B1 in human pancreatic beta cells.
Published in:
Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2024.1501061
By:
- Bonfim, Maressa Fernandes;
- Aitchedji, Camille;
- Van Goethem, Flore;
- Sauvage, Lionel;
- Poinsot, Thibault;
- Calonne, Emilie;
- Deplus, Rachel;
- Fuks, François;
- Eizirik, Decio L.;
- Op de Beeck, Anne
Publication type:
Article
Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18729-6
By:
- Lan, Jie;
- Rajan, Nicholas;
- Bizet, Martin;
- Penning, Audrey;
- Singh, Nitesh K.;
- Guallar, Diana;
- Calonne, Emilie;
- Li Greci, Andrea;
- Bonvin, Elise;
- Deplus, Rachel;
- Hsu, Phillip J.;
- Nachtergaele, Sigrid;
- Ma, Chengjie;
- Song, Renhua;
- Fuentes-Iglesias, Alejandro;
- Hassabi, Bouchra;
- Putmans, Pascale;
- Mies, Frédérique;
- Menschaert, Gerben;
- Wong, Justin J. L.
Publication type:
Article
Dietary Flavanols Modulate the Transcription of Genes Associated with Cardiovascular Pathology without Changes in Their DNA Methylation State.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095527
By:
- Milenkovic, Dragan;
- Vanden Berghe, Wim;
- Boby, Céline;
- Leroux, Christine;
- Declerck, Ken;
- Szarc vel Szic, Katarzyna;
- Heyninck, Karen;
- Laukens, Kris;
- Bizet, Martin;
- Defrance, Matthieu;
- Dedeurwaerder, Sarah;
- Calonne, Emilie;
- Fuks, Francois;
- Haegeman, Guy;
- Haenen, Guido R. M. M.;
- Bast, Aalt;
- Weseler, Antje R.
Publication type:
Article
Aberrant Promoter Methylation and Expression of UTF1 during Cervical Carcinogenesis.
Published in:
PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042704
By:
- Guenin, Samuel;
- Mouallif, Mustapha;
- Deplus, Rachel;
- Lampe, Xavier;
- Krusy, Nathalie;
- Calonne, Emilie;
- Delbecque, Katty;
- Kridelka, Frederic;
- Fuks, François;
- Ennaji, My Mustapha;
- Delvenne, Philippe;
- Castresana, Javier S.
Publication type:
Article