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A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency.
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- Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1324608
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Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil.
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- PLoS ONE, 2021, v. 16, n. 12, p. 1, doi. 10.1371/journal.pone.0259937
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Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor.
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- PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0204831
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Physiological and proteomic analyses of Fe(III)‐reducing co‐cultures of Desulfotomaculum reducens MI‐1 and Geobacter sulfurreducens PCA.
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- Geobiology, 2018, v. 16, n. 5, p. 522, doi. 10.1111/gbi.12295
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Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode.
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- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01134
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The past, present and future of microbiome analyses.
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- Nature Protocols, 2016, v. 11, n. 11, p. 2049, doi. 10.1038/nprot.2016.148
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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla.
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- PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0155839
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Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2585-6
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Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00191
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Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85.
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- PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0143809
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Identification of proteins capable of metal reduction from the proteome of the Gram-positive bacterium D esulfotomaculum reducens MI-1 using an NADH-based activity assay.
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- Environmental Microbiology, 2015, v. 17, n. 6, p. 1977, doi. 10.1111/1462-2920.12673
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- Article
Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130557
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Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides.
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- BMC Genomics, 2014, v. 15, n. 1, p. 730, doi. 10.1186/1471-2164-15-730
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- Article
Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies.
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- Proteomics, 2013, v. 13, n. 18/19, p. 2776, doi. 10.1002/pmic.201300003
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SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.
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- Bioinformatics, 2013, v. 29, n. 20, p. 2641, doi. 10.1093/bioinformatics/btt454
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Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1803, doi. 10.1038/ismej.2013.74
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MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-49
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Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 161, doi. 10.1038/ismej.2010.97
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Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).
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- Microbial Biotechnology, 2011, v. 4, n. 1, p. 55, doi. 10.1111/j.1751-7915.2010.00194.x
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An Empirical Strategy for Characterizing Bacterial Proteomes across Species in the Absence of Genomic Sequences.
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- PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013968
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Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition.
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- Bioinformatics, 2009, v. 25, n. 19, p. 2573, doi. 10.1093/bioinformatics/btp426
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Relating perturbation magnitude to temporal gene expression in biological systems.
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- BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-43
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Comparative Bacterial Proteomics: Analysis of the Core Genome Concept.
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- PLoS ONE, 2008, v. 3, n. 2, p. 1, doi. 10.1371/journal.pone.0001542
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Quantification of a single population in a mixed microbial community using a laser integrated microarray scanner.
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- Journal of Environmental Engineering & Science, 2003, v. 2, n. 4, p. 247, doi. 10.1139/s03-027
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