Works by Cagliani, Rachele

Results: 91

Author Correction: Comparative genomics reveal a novel phylotaxonomic order in the genus Fusobacterium.

Published in:

2025

By:

Molteni, Cristian;
Forni, Diego;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Correction Notice

Origin and dispersal of Hepatitis E virus.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-017-0009-6

By:

Forni, Diego;
Cagliani, Rachele;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Origin and dispersal of Hepatitis E virus.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-017-0009-6

By:

Forni, Diego;
Cagliani, Rachele;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Dating the Emergence of Human Endemic Coronaviruses.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 5, p. 1095, doi. 10.3390/v14051095

By:

Forni, Diego;
Cagliani, Rachele;
Pozzoli, Uberto;
Mozzi, Alessandra;
Arrigoni, Federica;
De Gioia, Luca;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Recombination and Positive Selection Differentially Shaped the Diversity of Betacoronavirus Subgenera.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 11, p. 1313, doi. 10.3390/v12111313

By:

Forni, Diego;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Silencer elements as possible inhibitors of pseudoexon splicing.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 5, p. 1783, doi. 10.1093/nar/gkh341

By:

Sironi, Manuela;
Menozzi, Giorgia;
Riva, Laura;
Cagliani, Rachele;
Comi, Giacomo P.;
Bresolin, Nereo;
Giorda, Roberto;
Pozzoli, Uberto

Publication type:

Article

The CCR5Δ32 allele is not a major predisposing factor for severe H1N1pdm09 infection.

Published in:

BMC Research Notes, 2014, v. 7, p. 1, doi. 10.1186/1756-0500-7-504

By:

Sironi, Manuela;
Cagliani, Rachele;
Pontremoli, Chiara;
Rossi, Marianna;
Migliorino, Guglielmo;
Clerici, Mario;
Gori, Andrea

Publication type:

Article

An Evolutionary Analysis of Antigen Processing and Presentation across Different Timescales Reveals Pervasive Selection.

Published in:

PLoS Genetics, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pgen.1004189

By:

Forni, Diego;
Cagliani, Rachele;
Tresoldi, Claudia;
Pozzoli, Uberto;
De Gioia, Luca;
Filippi, Giulia;
Riva, Stefania;
Menozzi, Giorgia;
Colleoni, Marta;
Biasin, Mara;
Lo Caputo, Sergio;
Mazzotta, Francesco;
Comi, Giacomo P.;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Genome-Wide Identification of Susceptibility Alleles for Viral Infections through a Population Genetics Approach.

Published in:

PLoS Genetics, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pgen.1000849

By:

Fumagalli, Matteo;
Pozzoli, Uberto;
Cagliani, Rachele;
Comi, Giacomo P.;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Autoinflammation in Syndromic Hidradenitis Suppurativa: The Role of AIM2.

Published in:

Vaccines, 2023, v. 11, n. 1, p. 162, doi. 10.3390/vaccines11010162

By:

Moltrasio, Chiara;
Cagliani, Rachele;
Sironi, Manuela;
Clerici, Mario;
Pontremoli, Chiara;
Maronese, Carlo Alberto;
Tricarico, Paola Maura;
Crovella, Sergio;
Marzano, Angelo Valerio

Publication type:

Article

The Diversity of Mammalian Hemoproteins and Microbial Heme Scavengers Is Shaped by an Arms Race for Iron Piracy.

Published in:

Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02086

By:

Mozzi, Alessandra;
Forni, Diego;
Cagliani, Rachele;
Sironi, Manuela;
Clerici, Mario

Publication type:

Article

Dinucleotide biases in the genomes of prokaryotic and eukaryotic dsDNA viruses and their hosts.

Published in:

Molecular Ecology, 2024, v. 33, n. 6, p. 1, doi. 10.1111/mec.17287

By:

Forni, Diego;
Pozzoli, Uberto;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Homology‐based classification of accessory proteins in coronavirus genomes uncovers extremely dynamic evolution of gene content.

Published in:

Molecular Ecology, 2022, v. 31, n. 13, p. 3672, doi. 10.1111/mec.16531

By:

Forni, Diego;
Cagliani, Rachele;
Molteni, Cristian;
Arrigoni, Federica;
Mozzi, Alessandra;
Clerici, Mario;
De Gioia, Luca;
Sironi, Manuela

Publication type:

Article

Antigenic variation of SARS‐CoV‐2 in response to immune pressure.

Published in:

Molecular Ecology, 2021, v. 30, n. 14, p. 3548, doi. 10.1111/mec.15730

By:

Forni, Diego;
Cagliani, Rachele;
Pontremoli, Chiara;
Mozzi, Alessandra;
Pozzoli, Uberto;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Kinetochore proteins and microtubule‐destabilizing factors are fast evolving in eutherian mammals.

Published in:

Molecular Ecology, 2021, v. 30, n. 6, p. 1505, doi. 10.1111/mec.15812

By:

Pontremoli, Chiara;
Forni, Diego;
Pozzoli, Uberto;
Clerici, Mario;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

An Investigation of the Role of Common and Rare Variants in a Large Italian Multiplex Family of Multiple Sclerosis Patients.

Published in:

Genes, 2021, v. 12, n. 10, p. 1607, doi. 10.3390/genes12101607

By:

Barizzone, Nadia;
Cagliani, Rachele;
Basagni, Chiara;
Clarelli, Ferdinando;
Mendozzi, Laura;
Agliardi, Cristina;
Forni, Diego;
Tosi, Martina;
Mascia, Elisabetta;
Favero, Francesco;
Corà, Davide;
Corrado, Lucia;
Sorosina, Melissa;
Esposito, Federica;
Zuccalà, Miriam;
Vecchio, Domizia;
Liguori, Maria;
Comi, Cristoforo;
Comi, Giancarlo;
Martinelli, Vittorio

Publication type:

Article

Ancient Evolution of Mammarenaviruses: Adaptation via Changes in the L Protein and No Evidence for Host-Virus Codivergence.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 3, p. 863, doi. 10.1093/gbe/evy050

By:

Forni, Diego;
Pontremoli, Chiara;
Pozzoli, Uberto;
Clerici, Mario;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Natural Selection at the Brush-Border: Adaptations to Carbohydrate Diets in Humans and Other Mammals.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 9, p. 2569, doi. 10.1093/gbe/evv166

By:

Pontremoli, Chiara;
Mozzi, Alessandra;
Forni, Diego;
Cagliani, Rachele;
Pozzoli, Uberto;
Menozzi, Giorgia;
Vertemara, Jacopo;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

OASes and STING: Adaptive Evolution in Concert.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 4, p. 1016, doi. 10.1093/gbe/evv046

By:

Mozzi, Alessandra;
Pontremoli, Chiara;
Forni, Diego;
Clerici, Mario;
Pozzoli, Uberto;
Bresolin, Nereo;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Albuminoid Genes: Evolving at the Interface of Dispensability and Selection.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 11, p. 2983, doi. 10.1093/gbe/evu235

By:

Mozzi, Alessandra;
Forni, Diego;
Cagliani, Rachele;
Pozzoli, Uberto;
Vertemara, Jacopo;
Bresolin, Nereo;
Sironi, Manuela

Publication type:

Article

Ancient and Recent Selective Pressures Shaped Genetic Diversity at AIM2-Like Nucleic Acid Sensors.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 4, p. 830, doi. 10.1093/gbe/evu066

By:

Cagliani, Rachele;
Forni, Diego;
Biasin, Mara;
Comabella, Manuel;
Guerini, Franca R.;
Riva, Stefania;
Pozzoli, Uberto;
Agliardi, Cristina;
Caputo, Domenico;
Malhotra, Sunny;
Montalban, Xavier;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

ABO histo-blood group might modulate predisposition to Crohn's disease and affect disease behavior.

Published in:

Journal of Crohn's & Colitis, 2014, v. 8, n. 6, p. 489, doi. 10.1016/j.crohns.2013.10.014

By:

Forni, Diego;
Cleynen, Isabelle;
Ferrante, Marc;
Cassinotti, Andrea;
Cagliani, Rachele;
Ardizzone, Sandro;
Vermeire, Severine;
Fichera, Maria;
Lombardini, Marta;
Maconi, Giovanni;
de Franchis, Roberto;
Asselta, Rosanna;
Biasin, Mara;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0897-z

By:

Al-Daghri, Nasser M.;
Pontremoli, Chiara;
Cagliani, Rachele;
Forni, Diego;
Alokail, Majed S.;
Al-Attas, Omar S.;
Sabico, Shaun;
Riva, Stefania;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Evolutionary insights into host-pathogen interactions from mammalian sequence data.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 4, p. 224, doi. 10.1038/nrg3905

By:

Sironi, Manuela;
Cagliani, Rachele;
Forni, Diego;
Clerici, Mario

Publication type:

Article

Evolutionary insights into host-pathogen interactions from mammalian sequence data.

Published in:

2015

By:

Sironi, Manuela;
Cagliani, Rachele;
Forni, Diego;
Clerici, Mario

Publication type:

journal article

Genetic ancestry and population structure of vaccinia virus.

Published in:

NPJ Vaccines, 2022, v. 7, n. 1, p. 1, doi. 10.1038/s41541-022-00519-4

By:

Molteni, Cristian;
Forni, Diego;
Cagliani, Rachele;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

substitution spectra of coronavirus genomes.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab382

By:

Forni, Diego;
Cagliani, Rachele;
Pontremoli, Chiara;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences.

Published in:

Human Molecular Genetics, 2005, v. 14, n. 17, p. 2533, doi. 10.1093/hmg/ddi257

By:

Sironi, Manuela;
Menozzi, Giorgia;
Comi, Giacomo P.;
Cagliani, Rachele;
Bresolin, Nereo;
Pozzoli, Uberto

Publication type:

Article

A common genetic variant in FOXP2 is associated with language-based learning (dis)abilities: Evidence from two Italian independent samples.

Published in:

American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2017, v. 174, n. 5, p. 578, doi. 10.1002/ajmg.b.32546

By:

Mozzi, Alessandra;
Riva, Valentina;
Forni, Diego;
Sironi, Manuela;
Marino, Cecilia;
Molteni, Massimo;
Riva, Stefania;
Guerini, Franca R.;
Clerici, Mario;
Cagliani, Rachele;
Mascheretti, Sara

Publication type:

Article

Pathogen-Driven Selection in the Human Genome.

Published in:

International Journal of Evolutionary Biology, 2013, p. 1, doi. 10.1155/2013/204240

By:

Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Calpain 3 deficiency in Quail Eater's disease.

Published in:

Annals of Neurology, 2004, v. 55, n. 1, p. 146

By:

Olimpia Musumeci;
Mohammed Aguennouz;
Rachele Cagliani;
Giacomo Pietro Comi;
Anna Ciranni;
Carmelo Rodolico;
Corrado Messina;
Giuseppe Vita;
Antonio Toscano

Publication type:

Article

Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving.

Published in:

BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 171, doi. 10.1186/1471-2148-11-171

By:

Cagliani, Rachele;
Riva, Stefania;
Pozzoli, Uberto;
Fumagalli, Matteo;
Comi, Giacomo P.;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

The landscape of human genes involved in the immune response to parasitic worms.

Published in:

BMC Evolutionary Biology, 2010, v. 10, p. 264, doi. 10.1186/1471-2148-10-264

By:

Fumagalli, Matteo;
Pozzoli, Uberto;
Cagliani, Rachele;
Comi, Giacomo P.;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Both selective and neutral processes drive GC content evolution in the human genome.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-99

By:

Pozzoli, Uberto;
Menozzi, Giorgia;
Fumagalli, Matteo;
Cereda, Matteo;
Comi, Giacomo P.;
Cagliani, Rachele;
Bresolin, Nereo;
Sironi, Manuela

Publication type:

Article

Evolution of Virus-like Features and Intrinsically Disordered Regions in Retrotransposon-derived Mammalian Genes.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 8, p. 1, doi. 10.1093/molbev/msae154

By:

Cagliani, Rachele;
Forni, Diego;
Mozzi, Alessandra;
Fuchs, Rotem;
Tussia-Cohen, Dafna;
Arrigoni, Federica;
Pozzoli, Uberto;
Gioia, Luca De;
Hagai, Tzachi;
Sironi, Manuela

Publication type:

Article

Simplexviruses Successfully Adapt to Their Host by Fine-Tuning Immune Responses.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 7, p. 1, doi. 10.1093/molbev/msac142

By:

Mozzi, Alessandra;
Cagliani, Rachele;
Pontremoli, Chiara;
Forni, Diego;
Saulle, Irma;
Saresella, Marina;
Pozzoli, Uberto;
Cappelletti, Gioia;
Vantaggiato, Chiara;
Clerici, Mario;
Biasin, Mara;
Sironi, Manuela

Publication type:

Article

You Will Never Walk Alone: Codispersal of JC Polyomavirus with Human Populations.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 2, p. 442, doi. 10.1093/molbev/msz227

By:

Forni, Diego;
Cagliani, Rachele;
Clerici, Mario;
Pozzoli, Uberto;
Sironi, Manuela

Publication type:

Article

Positive Selection Drives Evolution at the Host-Filovirus Interaction Surface.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 11, p. 2836, doi. 10.1093/molbev/msw158

By:

Pontremoli, Chiara;
Forni, Diego;
Cagliani, Rachele;
Filippi, Giulia;
De Gioia, Luca;
Pozzoli, Uberto;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Evolutionary Analysis of the Contact System Indicates that Kininogen Evolved Adaptively in Mammals and in Human Populations.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 6, p. 1397, doi. 10.1093/molbev/mst054

By:

Cagliani, Rachele;
Forni, Diego;
Riva, Stefania;
Pozzoli, Uberto;
Colleoni, Marta;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Crohn's Disease Loci Are Common Targets of Protozoa-Driven Selection.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 5, p. 1077, doi. 10.1093/molbev/mst020

By:

Cagliani, Rachele;
Pozzoli, Uberto;
Forni, Diego;
Cassinotti, Andrea;
Fumagalli, Matteo;
Giani, Matteo;
Fichera, Maria;
Lombardini, Marta;
Ardizzone, Sandro;
Asselta, Rosanna;
de Franchis, Roberto;
Riva, Stefania;
Biasin, Mara;
Comi, Giacomo P.;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

An Evolutionary Analysis of RAC2 Identifies Haplotypes Associated with Human Autoimmune Diseases.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 12, p. 3319, doi. 10.1093/molbev/msr164

By:

Sironi, Manuela;
Guerini, Franca Rosa;
Agliardi, Cristina;
Biasin, Mara;
Cagliani, Rachele;
Fumagalli, Matteo;
Caputo, Domenico;
Cassinotti, Andrea;
Ardizzone, Sandro;
Zanzottera, Milena;
Bolognesi, Elisabetta;
Riva, Stefania;
Kanari, Yasuyoshi;
Miyazawa, Masaaki;
Clerici, Mario

Publication type:

Article

Population Genetics of IFIH1: Ancient Population Structure, Local Selection, and Implications for Susceptibility to Type 1 Diabetes.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 11, p. 2555, doi. 10.1093/molbev/msq141

By:

Fumagalli, Matteo;
Cagliani, Rachele;
Riva, Stefania;
Pozzoli, Uberto;
Biasin, Mara;
Piacentini, Luca;
Comi, Giacomo P.;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Polymorphisms in the CPB2 Gene Are Maintained by Balancing Selection and Result in Haplotype-Preferential Splicing of Exon 7.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 8, p. 1945, doi. 10.1093/molbev/msq082

By:

Cagliani, Rachele;
Fumagalli, Matteo;
Riva, Stefania;
Pozzoli, Uberto;
Fracassetti, Marco;
Bresolin, Nereo;
Comi, Giacomo P.;
Sironi, Manuela

Publication type:

Article

Population Genetic Structure and Human Adaptation of Kaposi Sarcoma–Associated Herpesvirus.

Published in:

Open Forum Infectious Diseases, 2025, v. 12, n. 3, p. 1, doi. 10.1093/ofid/ofaf111

By:

Mozzi, Alessandra;
Forni, Diego;
Cagliani, Rachele;
Molteni, Cristian;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Clinical, molecular, and protein correlations in a large sample of genetically diagnosed Italian limb girdle muscular dystrophy patients.

Published in:

Human Mutation, 2008, v. 29, n. 2, p. 258, doi. 10.1002/humu.20642

By:

Guglieri, Michela;
Magri, Francesca;
D'Angelo, Maria Grazia;
Prelle, Alessandro;
Morandi, Lucia;
Rodolico, Carmelo;
Cagliani, Rachele;
Mora, Marina;
Fortunato, Francesco;
Bordoni, Andreina;
Del Bo, Roberto;
Ghezzi, Serena;
Pagliarani, Serena;
Lucchiari, Sabrina;
Salani, Sabrina;
Zecca, Chiara;
Lamperti, Costanza;
Ronchi, Dario;
Aguennouz, Mohammed;
Ciscato, Patrizia

Publication type:

Article

Mutation finding in patients with dysferlin deficiency and role of the dysferlin interacting proteins annexin A1 and A2 in muscular dystrophies.

Published in:

Human Mutation, 2005, v. 26, n. 3, p. 283, doi. 10.1002/humu.9364

By:

Cagliani, Rachele;
Magri, Francesca;
Toscano, Antonio;
Merlini, Luciano;
Fortunato, Francesco;
Lamperti, Costanza;
Rodolico, Carmelo;
Prelle, Alessandro;
Sironi, Manuela;
Aguennouz, Mohammed;
Ciscato, Patrizia;
Uncini, Antonino;
Moggio, Maurizio;
Bresolin, Nereo;
Comi, Giacomo P.

Publication type:

Article

Genetic conflicts with Plasmodium parasites and functional constraints shape the evolution of erythrocyte cytoskeletal proteins.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33049-y

By:

Sironi, Manuela;
Forni, Diego;
Clerici, Mario;
Cagliani, Rachele

Publication type:

Article

Whole‐genome sequencing of hMPXV1 in five Italian cases confirms the occurrence of the predominant epidemic lineage.

Published in:

Journal of Medical Virology, 2023, v. 95, n. 2, p. 1, doi. 10.1002/jmv.28493

By:

Forni, Diego;
Moltrasio, Chiara;
Sironi, Manuela;
Mozzi, Alessandra;
Quattri, Eleonora;
Venegoni, Luigia;
Zamprogno, Marzia;
Citterio, Andrea;
Clerici, Mario;
Marzano, Angelo Valerio;
Cagliani, Rachele

Publication type:

Article

Comparative genomics reveal a novel phylotaxonomic order in the genus Fusobacterium.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06825-y

By:

Molteni, Cristian;
Forni, Diego;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Evolutionary history of type II transmembrane serine proteases involved in viral priming.

Published in:

Human Genetics, 2022, v. 141, n. 11, p. 1705, doi. 10.1007/s00439-022-02435-y

By:

Forni, Diego;
Sironi, Manuela;
Cagliani, Rachele

Publication type:

Article