Works matching AU Bystroff, Christopher

Results: 30

Influence of surface charge, binding site residues and glycosylation on Thielavia terrestris cutinase biochemical characteristics.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 10, p. 4435, doi. 10.1007/s00253-015-7254-1

By:

Shirke, Abhijit;
Basore, Danielle;
Holton, Samantha;
Su, An;
Baugh, Evan;
Butterfoss, Glenn;
Makhatadze, George;
Bystroff, Christopher;
Gross, Richard

Publication type:

Article

Remote homolog detection using local sequence-structure correlations.

Published in:

Proteins, 2004, v. 57, n. 3, p. 518, doi. 10.1002/prot.20221

By:

Hou, Yuna;
Hsu, Wynne;
Lee, Mong Li;
Bystroff, Christopher

Publication type:

Article

Predicting interresidue contacts using templates and pathways.

Published in:

Proteins, 2003, v. 53, n. S6, p. 497, doi. 10.1002/prot.10539

By:

Shao, Yu;
Bystroff, Christopher

Publication type:

Article

Helix propensities of short peptides: Molecular dynamics versus bioinformatics.

Published in:

Proteins, 2003, v. 50, n. 4, p. 552, doi. 10.1002/prot.10252

By:

Bystroff, Christopher;
Garde, Shekhar

Publication type:

Article

Blind predictions of local protein structure in CASP2 targets using the I-sites library.

Published in:

Proteins, 1997, v. 29, n. S1, p. 167, doi. 10.1002/(SICI)1097-0134(1997)1+<167::AID-PROT21>3.0.CO;2-L

By:

Bystroff, Christopher;
Baker, David

Publication type:

Article

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.

Published in:

Bioinformatics, 2006, v. 22, n. 4, p. 413

By:

Christopher Bystroff

Publication type:

Article

Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1010

By:

Christopher Bystroff

Publication type:

Article

Efficient remote homology detection using local structure.

Published in:

Bioinformatics, 2003, v. 19, n. 17, p. 2294, doi. 10.1093/bioinformatics/btg317

By:

Yuna Hou;
Wynne Hsu;
Mong Li Lee;
Christopher Bystroff

Publication type:

Article

Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA.

Published in:

Bioinformatics, 2002, v. 18, p. S54, doi. 10.1093/bioinformatics/18.suppl_1.S54

By:

Bystroff, Christopher;
Shao, Yu

Publication type:

Article

Fast design of arbitrary length loops in proteins using InteractiveRosetta.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2345-5

By:

Hooper, William F.;
Walcott, Benjamin D.;
Wang, Xing;
Bystroff, Christopher

Publication type:

Article

MASKER: improved solvent-excluded molecular surface area estimations using Boolean masks.

Published in:

Protein Engineering, 2002, v. 15, n. 12, p. 959, doi. 10.1093/protein/15.12.959

By:

Bystroff, Christopher

Publication type:

Article

An alternative derivation of the equations of motion in torsion space for a branched linear chain.

Published in:

Protein Engineering, 2001, v. 14, n. 11, p. 825, doi. 10.1093/protein/14.11.825

By:

Bystroff, Christopher

Publication type:

Article

Exploring the folding pathway of green fluorescent protein through disulfide engineering.

Published in:

Protein Science: A Publication of the Protein Society, 2015, v. 24, n. 3, p. 341, doi. 10.1002/pro.2621

By:

Pitman, Derek J.;
Banerjee, Shounak;
Macari, Stephen J.;
Castaldi, Christopher A.;
Crone, Donna E.;
Bystroff, Christopher

Publication type:

Article

Green-lighting green fluorescent protein: Faster and more efficient folding by eliminating a cis-trans peptide isomerization event.

Published in:

Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 4, p. 400, doi. 10.1002/pro.2421

By:

Rosenman, David J.;
Huang, Yao‐ming;
Xia, Ke;
Fraser, Keith;
Jones, Victoria E.;
Lamberson, Colleen M.;
Roey, Patrick;
Colón, Wilfredo;
Bystroff, Christopher

Publication type:

Article

Quantitative in vivo solubility and reconstitution of truncated circular permutants of green fluorescent protein.

Published in:

Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 11, p. 1775, doi. 10.1002/pro.735

By:

Huang, Yao-Ming;
Nayak, Sasmita;
Bystroff, Christopher

Publication type:

Article

Constraining local structure can speed up folding by promoting structural polarization of the folding pathway.

Published in:

Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 6, p. 959, doi. 10.1002/pro.619

By:

Buck, Patrick M.;
Bystroff, Christopher

Publication type:

Article

Alpha helical crossovers favor right-handed supersecondary structures by kinetic trapping: The phone cord effect in protein folding.

Published in:

Protein Science: A Publication of the Protein Society, 2009, v. 18, n. 8, p. 1602, doi. 10.1002/pro.182

By:

Cole, Benjamin J.;
Bystroff, Christopher

Publication type:

Article

Protein backbone ensemble generation explores the local structural space of unseen natural homologs.

Published in:

Bioinformatics, 2016, v. 32, n. 10, p. 1454, doi. 10.1093/bioinformatics/btw001

By:

Schenkelberg, Christian D.;
Bystroff, Christopher

Publication type:

Article

InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 4023, doi. 10.1093/bioinformatics/btv492

By:

Schenkelberg, Christian D.;
Bystroff, Christopher

Publication type:

Article

Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1138, doi. 10.1093/bioinformatics/btt735

By:

Pitman, Derek J.;
Schenkelberg, Christian D.;
Huang, Yao-Ming;
Teets, Frank D.;
DiTursi, Daniel;
Bystroff, Christopher

Publication type:

Article

Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns.

Published in:

1997

By:

Han, Karen E;
Bystroff, Christopher;
Baker, David

Publication type:

Other

Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability.

Published in:

Proteins, 2016, v. 84, n. 1, p. 60, doi. 10.1002/prot.24955

By:

Shirke, Abhijit N.;
Basore, Danielle;
Butterfoss, Glenn L.;
Bonneau, Richard;
Bystroff, Christopher;
Gross, Richard A.

Publication type:

Article

Geofold: Topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability.

Published in:

Proteins, 2012, v. 80, n. 3, p. 920, doi. 10.1002/prot.23249

By:

Ramakrishnan, Vibin;
Srinivasan, Sai Praveen;
Salem, Saeed M.;
Matthews, Suzanne J.;
Colón, Wilfredo;
Zaki, Mohammed;
Christopher Bystroff

Publication type:

Article

Simulating protein folding initiation sites using an alpha-carbon-only knowledge-based force field.

Published in:

Proteins, 2009, v. 76, n. 2, p. 331, doi. 10.1002/prot.22348

By:

Buck, Patrick M.;
Bystroff, Christopher

Publication type:

Article

Context shapes: Efficient complementary shape matching for protein-protein docking.

Published in:

Proteins, 2008, v. 70, n. 3, p. 1056, doi. 10.1002/prot.21600

By:

Shentu, Zujun;
Al Hasan, Mohammad;
Bystroff, Christopher;
Zaki, Mohammed J.

Publication type:

Article

ITERATIVE NON-SEQUENTIAL PROTEIN STRUCTURAL ALIGNMENT.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 3, p. 571, doi. 10.1142/S0219720009004205

By:

SALEM, SAEED;
ZAKI, MOHAMMED J.;
BYSTROFF, CHRISTOPHER

Publication type:

Article

Better together: Elements of successful scientific software development in a distributed collaborative community.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007507

By:

Koehler Leman, Julia;
Weitzner, Brian D.;
Renfrew, P. Douglas;
Lewis, Steven M.;
Moretti, Rocco;
Watkins, Andrew M.;
Mulligan, Vikram Khipple;
Lyskov, Sergey;
Adolf-Bryfogle, Jared;
Labonte, Jason W.;
Krys, Justyna;
Bystroff, Christopher;
Schief, William;
Gront, Dominik;
Schueler-Furman, Ora;
Baker, David;
Bradley, Philip;
Dunbrack, Roland;
Kortemme, Tanja;
Leaver-Fay, Andrew

Publication type:

Article

Footprints to singularity: A global population model explains late 20th century slow-down and predicts peak within ten years.

Published in:

PLoS ONE, 2021, v. 16, n. 5, p. 1, doi. 10.1371/journal.pone.0247214

By:

Bystroff, Christopher

Publication type:

Article

Immobilization and enhancement of a heterodimeric fluorescence biosensor in fibrous protein biomaterials.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 5, p. 1, doi. 10.1002/pro.70119

By:

Booth, Rebecca M.;
Jons, Amanda;
Gong, Xue;
Banerjee, Shounak;
Faulk, Britt;
Rye, Hays;
Bystroff, Christopher;
Bondos, Sarah E.

Publication type:

Article

Challenges and Solutions for Leave-One-Out Biosensor Design in the Context of a Rugged Fitness Landscape.

Published in:

Sensors (14248220), 2024, v. 24, n. 19, p. 6380, doi. 10.3390/s24196380

By:

Banerjee, Shounak;
Fraser, Keith;
Crone, Donna E.;
Patel, Jinal C.;
Bondos, Sarah E.;
Bystroff, Christopher

Publication type:

Article