Works by Buttigieg, Pier Luigi

Results: 51

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability.

Published in:

Biodiversity Data Journal, 2023, p. 1, doi. 10.3897/BDJ.11.e112420

By:

Meyer, Raïssa;
Appeltans, Ward;
Duncan, William D.;
Dimitrova, Mariya;
Yi-Ming Gan;
Stjernegaard Jeppesen, Thomas;
Mungall, Christopher;
Paul, Deborah L.;
Provoost, Pieter;
Robertson, Tim;
Schriml, Lynn;
Suominen, Saara;
Walls, Ramona;
Sweetlove, Maxime;
Ung, Visotheary;
Van de Putte, Anton;
Wallis, Elycia;
Wieczorek, John;
Buttigieg, Pier Luigi

Publication type:

Article

BIOREALM—An ontology of comparative biogeography: New insights into the semantics of biodiversity conservation.

Published in:

Journal of Biogeography, 2023, v. 50, n. 9, p. 1576, doi. 10.1111/jbi.14631

By:

Ung, Visotheary;
Buttigieg, Pier Luigi

Publication type:

Article

Megx.net: integrated database resource for marine ecological genomics.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D391, doi. 10.1093/nar/gkp918

By:

Kottmann, Renzo;
Kostadinov, Ivalyo;
Duhaime, Melissa Beth;
Buttigieg, Pier Luigi;
Yilmaz, Pelin;
Hankeln, Wolfgang;
Waldmann, Jost;
Glöckner, Frank Oliver

Publication type:

Article

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0097-6

By:

Buttigieg, Pier Luigi;
Pafilis, Evangelos;
Lewis, Suzanna E.;
Schildhauer, Mark P.;
Walls, Ramona L.;
Mungall, Christopher J.

Publication type:

Article

The environment ontology: contextualising biological and biomedical entities.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-43

By:

Buttigieg, Pier Luigi;
Morrison, Norman;
Smith, Barry;
Mungall, Christopher J.;
Lewis, Suzanna E.

Publication type:

Article

Earth Science Data Repositories: Implementing the CARE Principles.

Published in:

Data Science Journal, 2024, v. 23, p. 1, doi. 10.5334/dsj-2024-037

By:

O'Brien, Margaret;
Duerr, Ruth;
Taitingfong, Riley;
Martinez, Andrew;
Vera, Lourdes;
Jennings, Lydia L.;
Downs, Robert R.;
Antognoli, Erin;
Brink, Talya Ten;
Halmai, Nicole B.;
David-Chavez, Dominique;
Carroll, Stephanie Russo;
Hudson, Maui;
Buttigieg, Pier Luigi

Publication type:

Article

Harmonizing GCW Cryosphere Vocabularies with ENVO and SWEET. Towards a General Model for Semantic Harmonization.

Published in:

Data Science Journal, 2024, v. 23, p. 1, doi. 10.5334/dsj-2024-026

By:

Duerr, Ruth;
Buttigieg, Pier Luigi;
Cross, Gary Berg;
Blumberg, Kai Lewis;
Whitehead, Brandon;
Wiegand, Nancy;
Rose, Kate

Publication type:

Article

Perspectives on presentation and pedagogy in aid of bioinformatics education.

Published in:

Briefings in Bioinformatics, 2010, v. 11, n. 6, p. 587, doi. 10.1093/bib/bbq062

By:

Buttigieg, Pier Luigi

Publication type:

Article

The Ocean Biomolecular Observing Network (OBON).

Published in:

Marine Technology Society Journal, 2022, v. 56, n. 3, p. 106, doi. 10.4031/mtsj.56.3.20

By:

Leinen, Margaret;
Chavez, Francisco;
Meyer, Raïssa;
Buttigieg, Pier Luigi;
Davies, Neil;
Casotti, Raffaella;
Fischer, Astrid

Publication type:

Article

Sharing Best Practices Among Operators and Users of Oceanographic Data: Challenge, Status, and Plans of the Ocean Best Practices Project.

Published in:

Marine Technology Society Journal, 2018, v. 52, n. 3, p. 8, doi. 10.4031/MTSJ.52.3.11

By:

Bushnell, Mark;
Buttigieg, Pier Luigi;
Hermes, Juliet;
Heslop, Emma;
Karstensen, Johannes;
Muller-Karger, Frank;
Mas, Cristian Munoz;
Pearlman, Francoise;
Pearlman, Jay;
Simpson, Pauline

Publication type:

Article

Evolving the UNESCO/IOC Ocean Best Practices System: preparing methods for the oceans' digital ecosystem.

Published in:

Bollettino di Geofisica Teorica ed Applicata, 2021, v. 62, p. 222

By:

Buttigieg, Pier Luigi;
Hörstmann, Cora;
Simpson, Pauline;
Pearlman, Jay S.

Publication type:

Article

The Ocean InfoHub Project.

Published in:

Bollettino di Geofisica Teorica ed Applicata, 2021, v. 62, p. 21

By:

Scott, Lucy;
Spears, Tobias;
Pissierssens, Peter;
Lambert, Arno;
Buttigieg, Pier Luigi

Publication type:

Article

Biogeographic gradients of picoplankton diversity indicate increasing dominance of prokaryotes in warmer Arctic fjords.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-05946-8

By:

Hörstmann, Cora;
Hattermann, Tore;
Thomé, Pauline C.;
Buttigieg, Pier Luigi;
Morel, Isidora;
Waite, Anya M.;
John, Uwe

Publication type:

Article

Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean.

Published in:

Biogeosciences, 2021, v. 18, n. 12, p. 3733, doi. 10.5194/bg-18-3733-2021

By:

Hörstmann, Cora;
Raes, Eric J.;
Buttigieg, Pier Luigi;
Lo Monaco, Claire;
John, Uwe;
Waite, Anya M.

Publication type:

Article

Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability.

Published in:

Biodiversity Information Science & Standards, 2021, p. 1, doi. 10.3897/biss.5.73775

By:

Meyer, Raïssa;
Buttigieg, Pier Luigi;
Wieczorek, John;
Jeppesen, Thomas Stjernegaard;
Duncan, William D.;
Yi-Ming Gan;
Sweetlove, Maxime;
Suominen, Saara

Publication type:

Article

Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards.

Published in:

2019

By:

Blum, Stanley;
Barker, Katharine;
Baskauf, Steven J.;
Berendsohn, Walter G.;
Buttigieg, Pier Luigi;
Döring, Markus;
Droege, Gabriele;
Fichtmueller, David;
Glöckler, Falko;
Güntsch, Anton;
Guralnick, Robert;
Hoffmann, Jana;
Klazenga, Niels;
Macklin, James;
Morris, Paul J.;
Paul, Deborah L;
Petersen, Mareike;
Robertson, Tim;
Sachs, Joel;
Shorthouse, David Peter

Publication type:

Abstract

Mainstreaming Molecular Biodiversity: A call for a unified and interoperable framework.

Published in:

2019

By:

Buttigieg, Pier Luigi;
Lanfear, Jerry;
Glöckner, Frank Oliver;
Macklin, James A.

Publication type:

Abstract

FAIR.ReD: Semantic knowledge graph infrastructure for the life sciences.

Published in:

2019

By:

Vogt, Lars;
Auer, Sören;
Bartolomaeus, Thomas;
Buttigieg, Pier Luigi;
Grobe, Peter;
Michalik, Peter;
Stocker, Markus;
Usbeck, Ricardo

Publication type:

Abstract

Towards an Ontology of Comparative Biogeography: New insights into the semantics of biodiversity conservation.

Published in:

2019

By:

Ung, Visotheary;
Buttigieg, Pier Luigi

Publication type:

Abstract

The Global Omics Observatory Network: Shaping standards for long-term molecular observation.

Published in:

2019

By:

Buttigieg, Pier Luigi;
Janssen, Felix;
Macklin, James;
Pitz, Kathleen

Publication type:

Abstract

Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity.

Published in:

2019

By:

Buttigieg, Pier Luigi;
Walls, Ramona;
Thessen, Anne

Publication type:

Abstract

Building semantics in the domain of trait data: an OBO Library approach.

Published in:

Biodiversity Information Science & Standards, 2017, p. 1, doi. 10.3897/tdwgproceedings.1.20293

By:

Buttigieg, Pier Luigi

Publication type:

Article

Semantically Defining Populations for 'Omics Research.

Published in:

Biodiversity Information Science & Standards, 2017, p. 1, doi. 10.3897/tdwgproceedings.1.20435

By:

Walls, Ramona L.;
Buttigieg, Pier Luigi

Publication type:

Article

Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait).

Published in:

Frontiers in Microbiology, 2015, v. 5, p. 1, doi. 10.3389/fmicb.2014.00660

By:

Buttigieg, Pier Luigi;
Ramette, Alban

Publication type:

Article

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00601

By:

Ramette, Alban;
Buttigieg, Pier Luigi

Publication type:

Article

Microbial diversity through an oceanographic lens: refining the concept of ocean provinces through trophic‐level analysis and productivity‐specific length scales.

Published in:

Environmental Microbiology, 2022, v. 24, n. 1, p. 404, doi. 10.1111/1462-2920.15832

By:

Hörstmann, Cora;
Buttigieg, Pier Luigi;
John, Uwe;
Raes, Eric J.;
Wolf‐Gladrow, Dieter;
Bracher, Astrid;
Waite, Anya M.

Publication type:

Article

Gene expression and ultrastructure of meso‐ and thermophilic methanotrophic consortia.

Published in:

Environmental Microbiology, 2018, v. 20, n. 5, p. 1651, doi. 10.1111/1462-2920.14077

By:

Krukenberg, Viola;
Riedel, Dietmar;
Gruber‐Vodicka, Harald R.;
Buttigieg, Pier Luigi;
Tegetmeyer, Halina E.;
Boetius, Antje;
Wegener, Gunter

Publication type:

Article

MetaBar -- a tool for consistent contextual dataacquisition and standards compliant submission.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 358, doi. 10.1186/1471-2105-11-358

By:

Hankeln, Wolfgang;
Buttigieg, Pier Luigi;
Fink, Dennis;
Kottmann, Renzo;
Yilmaz, Pelin;
Glöckner, Frank Oliver

Publication type:

Article

Transforming the study of organisms: Phenomic data models and knowledge bases.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008376

By:

Thessen, Anne E.;
Walls, Ramona L.;
Vogt, Lars;
Singer, Jessica;
Warren, Robert;
Buttigieg, Pier Luigi;
Balhoff, James P.;
Mungall, Christopher J.;
McGuinness, Deborah L.;
Stucky, Brian J.;
Yoder, Matthew J.;
Haendel, Melissa A.

Publication type:

Article

Earth Virtualization Engines (EVE).

Published in:

Earth System Science Data, 2024, v. 16, n. 4, p. 2113, doi. 10.5194/essd-16-2113-2024

By:

Stevens, Bjorn;
Adami, Stefan;
Ali, Tariq;
Anzt, Hartwig;
Aslan, Zafer;
Attinger, Sabine;
Bäck, Jaana;
Baehr, Johanna;
Bauer, Peter;
Bernier, Natacha;
Bishop, Bob;
Bockelmann, Hendryk;
Bony, Sandrine;
Brasseur, Guy;
Bresch, David N.;
Breyer, Sean;
Brunet, Gilbert;
Buttigieg, Pier Luigi;
Cao, Junji;
Castet, Christelle

Publication type:

Article

Synthesis Product for Ocean Time Series (SPOTS) – a ship-based biogeochemical pilot.

Published in:

Earth System Science Data, 2024, v. 16, n. 4, p. 1901, doi. 10.5194/essd-16-1901-2024

By:

Lange, Nico;
Fiedler, Björn;
Álvarez, Marta;
Benoit-Cattin, Alice;
Benway, Heather;
Buttigieg, Pier Luigi;
Coppola, Laurent;
Currie, Kim;
Flecha, Susana;
Gerlach, Dana S.;
Honda, Makio;
Huertas, I. Emma;
Lauvset, Siv K.;
Muller-Karger, Frank;
Körtzinger, Arne;
O'Brien, Kevin M.;
Ólafsdóttir, Sólveig R.;
Pacheco, Fernando C.;
Rueda-Roa, Digna;
Skjelvan, Ingunn

Publication type:

Article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Published in:

Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069

By:

Jackson, Rebecca;
Matentzoglu, Nicolas;
Overton, James A;
Vita, Randi;
Balhoff, James P;
Buttigieg, Pier Luigi;
Carbon, Seth;
Courtot, Melanie;
Diehl, Alexander D;
Dooley, Damion M;
Duncan, William D;
Harris, Nomi L;
Haendel, Melissa A;
Lewis, Suzanna E;
Natale, Darren A;
Osumi-Sutherland, David;
Ruttenberg, Alan;
Schriml, Lynn M;
Smith, Barry;
Stoeckert Jr., Christian J

Publication type:

Article

Value, but high costs in post-deposition data curation.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/bav126

By:

Hoopen, Petra ten;
Amid, Clara;
Buttigieg, Pier Luigi;
Pafilis, Evangelos;
Bravakos, Panos;
Cerdeño-Tárraga, Ana M.;
Gibson, Richard;
Kahlke, Tim;
Legaki, Aglaia;
Murthy, Kada Narayana;
Papastefanou, Gabriella;
Pereira, Emiliano;
Rossello, Marc;
Toribio, Ana Luisa;
Cochrane, Guy

Publication type:

Article

EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw005

By:

Pafilis, Evangelos;
Buttigieg, Pier Luigi;
Ferrell, Barbra;
Pereira, Emiliano;
Schnetzer, Julia;
Arvanitidis, Christos;
Jensen, Lars Juhl

Publication type:

Article

Building capacities for 'omics' observations in the ocean at high spatiotemporal resolution.

Published in:

Geophysical Research Abstracts, 2019, v. 21, p. 1

By:

Janssen, Felix;
Buttigieg, Pier Luigi;
Metfies, Katja;
Mowlem, Matthew;
Robidart, Julie;
Salter, Ian;
Wietz, Matthias

Publication type:

Article

Creating a global network to link multi-omics and biogeochemical observations through long-term observatories.

Published in:

Geophysical Research Abstracts, 2019, v. 21, p. 1

By:

Buttigieg, Pier Luigi;
Janssen, Felix;
Peplies, Jörg;
Macklin, James

Publication type:

Article

Biogeochemical alignments: the coupling of ecology and geochemistry in the deep biosphere.

Published in:

Geophysical Research Abstracts, 2019, v. 21, p. 1

By:

Meador, Travis Blake;
Buttigieg, Pier Luigi;
Bowles, Marshall;
Hinrichs, Kai-Uwe

Publication type:

Article

Tuning semantic technologies to enhance discovery of ocean best practices.

Published in:

Geophysical Research Abstracts, 2018, v. 20, p. 7575

By:

Buttigieg, Pier Luigi;
Castro, Alexander Garcia;
Pearlman, Jay

Publication type:

Article

A Peer Review Process for Best Practice in Ocean Observing.

Published in:

Geophysical Research Abstracts, 2018, v. 20, p. 2609

By:

Karstensen, Johannes;
Buttigieg, Pier Luigi;
Pearlman, Jay;
Hermes, Juliet;
Gehlen, Marion

Publication type:

Article

Ocean Observation Best Practices - Interoperability at a New Level.

Published in:

Geophysical Research Abstracts, 2018, v. 20, p. 2573

By:

Pearlman, Jay;
Bushnell, Mark;
Buttigieg, Pier Luigi;
Hermes, Juliet;
Heslop, Emma;
Karstensen, Johannes;
Munoz, Cristian;
Pearlman, Francoise;
Simpson, Pauline

Publication type:

Article

Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the South Indian Ocean and the Southern Ocean.

Published in:

Biogeosciences Discussions, 2021, p. 1, doi. 10.5194/bg-2021-52

By:

Hörstmann, Cora;
Raes, Eric J.;
Buttigieg, Pier Luigi;
Monaco, Claire Lo;
John, Uwe;
Waite, Anya M.

Publication type:

Article

A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers.

Published in:

GigaScience, 2021, v. 10, n. 5, p. 1, doi. 10.1093/gigascience/giab034

By:

Dimitrova, Mariya;
Meyer, Raïssa;
Buttigieg, Pier Luigi;
Georgiev, Teodor;
Zhelezov, Georgi;
Demirov, Seyhan;
Smith, Vincent;
Penev, Lyubomir

Publication type:

Article

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0089606

By:

Walls, Ramona L.;
Deck, John;
Guralnick, Robert;
Baskauf, Steve;
Beaman, Reed;
Blum, Stanley;
Bowers, Shawn;
Buttigieg, Pier Luigi;
Davies, Neil;
Endresen, Dag;
Gandolfo, Maria Alejandra;
Hanner, Robert;
Janning, Alyssa;
Krishtalka, Leonard;
Matsunaga, Andréa;
Midford, Peter;
Morrison, Norman;
Tuama, Éamonn Ó.;
Schildhauer, Mark;
Smith, Barry

Publication type:

Article

Ecogenomic Perspectives on Domains of Unknown Function: Correlation-Based Exploration of Marine Metagenomes.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0050869

By:

Buttigieg, Pier Luigi;
Hankeln, Wolfgang;
Kostadinov, Ivaylo;
Kottmann, Renzo;
Yilmaz, Pelin;
Duhaime, Melissa Beth;
Glöckner, Frank Oliver

Publication type:

Article

CDinFusion - Submission-Ready, On-Line Integration of Sequence and Contextual Data.

Published in:

PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024797

By:

Hankeln, Wolfgang;
Wendel, Norma Johanna;
Gerken, Jan;
Waldmann, Jost;
Buttigieg, Pier Luigi;
Kostadinov, Ivaylo;
Kottmann, Renzo;
Yilmaz, Pelin;
Glöckner, Frank Oliver

Publication type:

Article

Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.5984

By:

Guevara Campoverde, Nataly Carolina;
Hassenrück, Christiane;
Buttigieg, Pier Luigi;
Gärdes, Astrid

Publication type:

Article

Comparison of Two 16S rRNA Primers (V3–V4 and V4–V5) for Studies of Arctic Microbial Communities.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.637526

By:

Fadeev, Eduard;
Cardozo-Mino, Magda G.;
Rapp, Josephine Z.;
Bienhold, Christina;
Salter, Ian;
Salman-Carvalho, Verena;
Molari, Massimiliano;
Tegetmeyer, Halina E.;
Buttigieg, Pier Luigi;
Boetius, Antje

Publication type:

Article

OceanBestPractices System: a global resource to facilitate harmonizing practices in ocean observation, data and information.

Published in:

2018

By:

Pissierssens, Peter;
Muñoz, Cristian;
Karstensen, Johannes;
Pearlman, Jay;
Simpson, Pauline;
Bushnell, Mark;
Buttigieg, Pier Luigi;
Hermes, Juliet;
Heslop, Emma;
Muller-Karger, Frank;
Pearlman, Francoise

Publication type:

Conference Paper/Materials

Technologies for a FAIRer use of Ocean Best Practices.

Published in:

2018

By:

Buttigieg, Pier Luigi;
Simpson, Pauline;
Pearlman, Jay;
Pissierssens, Peter;
Caltagirone, Scott;
Bushnell, Mark;
Hermes, Juliet;
Heslop, Emma;
Karstensen, Johannes;
Muller-Karger, Frank;
Muñoz, Cristian;
Pearlman, Francoise

Publication type:

Conference Paper/Materials

Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 4, p. 1042, doi. 10.1038/s41396-020-0588-4

By:

Hoffmann, Katy;
Bienhold, Christina;
Buttigieg, Pier Luigi;
Knittel, Katrin;
Laso-Pérez, Rafael;
Rapp, Josephine Z.;
Boetius, Antje;
Offre, Pierre

Publication type:

Article