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Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification.
- Published in:
- American Journal of Botany, 2023, v. 110, n. 11, p. 1, doi. 10.1002/ajb2.16249
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- Article
Linking Ecological Specialization to Its Macroevolutionary Consequences: An Example with Passerine Nest Type.
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- Systematic Biology, 2023, v. 72, n. 2, p. 294, doi. 10.1093/sysbio/syac083
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- Article
Updating splits, lumps, and shuffles: Reconciling GenBank names with standardized avian taxonomies.
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- Ornithology (Oxford University Press), 2022, v. 139, n. 4, p. 1, doi. 10.1093/ornithology/ukac045
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Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of Serianthes and its relationship with Falcataria and Wallaceodendron in the wider ingoid clade (Leguminosae, Caesalpinioideae).
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- PhytoKeys, 2022, n. 205, p. 335, doi. 10.3897/phytokeys.205.79144
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- Article
An NGS-Based Phylogeny of Orthotricheae (Orthotrichaceae, Bryophyta) With the Proposal of the New Genus Rehubryum From Zealandia.
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- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.882960
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Pith width, leaf size, and twig thickness.
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- American Journal of Botany, 2021, v. 108, n. 11, p. 2143, doi. 10.1002/ajb2.1800
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Whole genome phylogeny of Gallus: introgression and data-type effects.
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- Avian Research, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s40657-020-00194-w
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Interaction among ploidy, breeding system and lineage diversification.
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- New Phytologist, 2019, v. 224, n. 3, p. 1252, doi. 10.1111/nph.16184
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Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications.
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- Genome Biology & Evolution, 2018, v. 10, n. 11, p. 2882, doi. 10.1093/gbe/evy200
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- Article
Community assembly of the ferns of Florida.
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- American Journal of Botany, 2018, v. 105, n. 3, p. 549, doi. 10.1002/ajb2.1073
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- Article
A roadmap for global synthesis of the plant tree of life.
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- American Journal of Botany, 2018, v. 105, n. 3, p. 614, doi. 10.1002/ajb2.1041
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- Article
Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing.
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- Applications in Plant Sciences, 2018, v. 6, n. 3, p. 1, doi. 10.1002/aps3.1035
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- Article
chromploid: An R package for chromosome number evolution across the plant tree of life.
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- Applications in Plant Sciences, 2018, v. 6, n. 3, p. 1, doi. 10.1002/aps3.1037
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- Article
Non‐random patterns of invasion and extinction reduce phylogenetic diversity in island bird assemblages.
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- Ecography, 2018, v. 41, n. 2, p. 361, doi. 10.1111/ecog.02738
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- Article
Building the "Plant Glossary"--A controlled botanical vocabulary using terms extracted from the Floras of North America and China.
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- Taxon, 2017, v. 66, n. 4, p. 953, doi. 10.12705/664.9
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- Article
Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots.
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- Evolution, 2017, v. 71, n. 5, p. 1138, doi. 10.1111/evo.13226
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- Article
Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms.
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- American Journal of Botany, 2016, v. 103, n. 7, p. 1175, doi. 10.3732/ajb.1500408
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- Article
Phylogeny of the Rosidae: A dense taxon sampling analysis.
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- Journal of Systematics & Evolution, 2016, v. 54, n. 4, p. 363, doi. 10.1111/jse.12211
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- Article
Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data.
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- Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1023, doi. 10.1093/gbe/evw058
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- Article
Historical climatic variability and geographical barriers as drivers of community composition in a biodiversity hotspot.
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- Journal of Biogeography, 2016, v. 43, n. 1, p. 123, doi. 10.1111/jbi.12605
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- Article
Assessing Approaches for Inferring Species Trees from Multi-Copy Genes.
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- Systematic Biology, 2015, v. 64, n. 2, p. 325, doi. 10.1093/sysbio/syu128
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- Article
MATRIXCONVERTER: FACILITATING CONSTRUCTION OF PHENOMIC CHARACTER MATRICES.
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- Applications in Plant Sciences, 2015, v. 3, n. 2, p. 1, doi. 10.3732/apps.1400088
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- Article
Finding Our Way through Phenotypes.
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- 2015
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- Publication type:
- Opinion
Duplications and losses in gene families of rust pathogens highlight putative effectors.
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- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00299
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From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes.
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- BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-23
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- Article
PHYLOGENETIC RELATIONSHIPS AND CHARACTER EVOLUTION ANALYSIS OF SAXIFRAGALES USING A SUPERMATRIX APPROACH.
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- American Journal of Botany, 2013, v. 100, n. 5, p. 916, doi. 10.3732/ajb.1300044
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- Article
RECURRENT EVOLUTION OF DIOECY IN BRYOPHYTES.
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- Evolution, 2013, v. 67, n. 2, p. 567, doi. 10.1111/j.1558-5646.2012.01808.x
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Stability analysis of phylogenetic trees.
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- Bioinformatics, 2013, v. 29, n. 2, p. 166, doi. 10.1093/bioinformatics/bts657
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- Article
Next-generation phenomics for the Tree of Life.
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- PLoS Currents, 2013, p. 488, doi. 10.1371/currents.tol.085c713acafc8711b2ff7010a4b03733
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- Article
Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning.
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- Systematic Biology, 2012, v. 61, n. 6, p. 955, doi. 10.1093/sysbio/sys055
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- Article
Turning the Crown Upside Down: Gene Tree Parsimony Roots the Eukaryotic Tree of Life.
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- Systematic Biology, 2012, v. 61, n. 4, p. 653, doi. 10.1093/sysbio/sys026
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- Article
Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-13-S10-S11
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- Article
Consensus properties for the deep coalescence problem and their application for scalable tree search.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-13-S10-S12
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- Article
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 256, doi. 10.1186/1471-2105-13-256
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- Article
Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis.
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- Journal of Botany, 2012, p. 1, doi. 10.1155/2012/292857
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- Article
Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees.
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- Systematic Biology, 2011, v. 60, n. 2, p. 117, doi. 10.1093/sysbio/syq072
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- Article
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.
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- BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S15
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- Article
An ILP solution for the gene duplication problem.
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- BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S14
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- Article
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.
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- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S1-S42
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- Article
Robinson-Foulds Supertrees.
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- Algorithms for Molecular Biology, 2010, v. 5, p. 18, doi. 10.1186/1748-7188-5-18
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Triplet supertree heuristics for the tree of life.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S8
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- Article
Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms.
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- BMC Evolutionary Biology, 2009, v. 9, p. 1, doi. 10.1186/1471-2148-9-61
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- Article
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.
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- Bioinformatics, 2008, v. 24, n. 13, p. 1540, doi. 10.1093/bioinformatics/btn230
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- Article
PhyloFinder: An intelligent search engine for phylogenetic tree databases.
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- BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-90
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- Article
Spectral Partitioning of Phylogenetic Data Sets Based on Compatibility.
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- Systematic Biology, 2007, v. 56, n. 4, p. 623, doi. 10.1080/10635150701499571
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- Article
Supertree Bootstrapping Methods for Assessing Phylogenetic Variation among Genes in Genome-Scale Data Sets.
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- Systematic Biology, 2006, v. 55, n. 3, p. 426, doi. 10.1080/10635150500541722
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- Article
Covarion Structure in Plastid Genome Evolution: A New Statistical Test.
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- Molecular Biology & Evolution, 2005, v. 22, n. 4, p. 914, doi. 10.1093/molbev/msi076
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- Article
PHYLOGENETIC SIGNAL IN NUCLEOTIDE DATA FROM SEED PLANTS: IMPLICATIONS FOR RESOLVING THE SEED PLANT TREE OF LIFE.
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- American Journal of Botany, 2004, v. 91, n. 10, p. 1599, doi. 10.3732/ajb.91.10.1599
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- Article
Performance of Flip Supertree Construction with a Heuristic Algorithm.
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- Systematic Biology, 2004, v. 53, n. 2, p. 299, doi. 10.1080/10635150490423719
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- Article
Adaptive Evolution in the Photosensory Domain of Phytochrome A in Early Angiosperms.
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- Molecular Biology & Evolution, 2003, v. 20, n. 7, p. 1087, doi. 10.1093/molbev/msg123
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- Article