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A biofertilizing fungal endophyte of cranberry plants suppresses the plant pathogen Diaporthe.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1327392
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- Article
Mitochondrial genome annotation with MFannot: a critical analysis of gene identification and gene model prediction.
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- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1222186
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- Article
Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway.
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- Nucleic Acids Research, 2023, v. 51, n. 12, p. 6443, doi. 10.1093/nar/gkad422
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- Article
Nuclear Genome Sequence and Gene Expression of an Intracellular Fungal Endophyte Stimulating the Growth of Cranberry Plants.
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- Journal of Fungi, 2023, v. 9, n. 1, p. 126, doi. 10.3390/jof9010126
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Endosymbionts in cranberry: Diversity, effect on plant growth, and pathogen biocontrol.
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- Plants, People, Planet, 2022, v. 4, n. 5, p. 511, doi. 10.1002/ppp3.10290
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- Article
An Unexpectedly Complex Mitoribosome in Andalucia godoyi, a Protist with the Most Bacteria-like Mitochondrial Genome.
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- Molecular Biology & Evolution, 2021, v. 38, n. 3, p. 788, doi. 10.1093/molbev/msaa223
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- Article
Targeted integration by homologous recombination enables in situ tagging and replacement of genes in the marine microeukaryote Diplonema papillatum.
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- Environmental Microbiology, 2020, v. 22, n. 9, p. 3660, doi. 10.1111/1462-2920.15130
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The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome.
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- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-0741-6
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- Article
Perfection of eccentricity: Mitochondrial genomes of diplonemids.
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- IUBMB Life, 2018, v. 70, n. 12, p. 1197, doi. 10.1002/iub.1927
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- Article
Transformation of <italic>Diplonema papillatum</italic>, the type species of the highly diverse and abundant marine microeukaryotes Diplonemida (Euglenozoa).
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- Environmental Microbiology, 2018, v. 20, n. 3, p. 1030, doi. 10.1111/1462-2920.14041
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- Article
Novel modes of RNA editing in mitochondria.
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- Nucleic Acids Research, 2016, v. 44, n. 10, p. 4907, doi. 10.1093/nar/gkw188
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- Article
Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2.
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- BMC Structural Biology, 2015, v. 15, p. 1, doi. 10.1186/s12900-015-0046-0
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- Article
Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13764, doi. 10.1093/nar/gku1266
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- Article
Earliest Holozoan Expansion of Phosphotyrosine Signaling.
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- Molecular Biology & Evolution, 2014, v. 31, n. 3, p. 517, doi. 10.1093/molbev/mst241
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- Article
Trans-splicing and RNA editing of LSU rRNA in Diplonema mitochondria.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2660, doi. 10.1093/nar/gkt1152
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- Article
Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists.
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- Genome Biology & Evolution, 2013, v. 5, n. 2, p. 418, doi. 10.1093/gbe/evt008
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- Article
Unscrambling genetic information at the RNA level.
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- Wiley Interdisciplinary Reviews: RNA, 2012, v. 3, n. 2, p. 213, doi. 10.1002/wrna.1106
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- Article
Evolutionarily Conserved cox1 Trans-Splicing Without cis-Motifs.
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- Molecular Biology & Evolution, 2011, v. 28, n. 9, p. 2425, doi. 10.1093/molbev/msr075
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- Article
Gene fragmentation: a key to mitochondrial genome evolution in Euglenozoa?
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- Current Genetics, 2011, v. 57, n. 4, p. 225, doi. 10.1007/s00294-011-0340-8
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- Article
Systematically fragmented genes in a multipartite mitochondrial genome.
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- Nucleic Acids Research, 2011, v. 39, n. 3, p. 979, doi. 10.1093/nar/gkq883
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- Article
Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles.
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- Molecular Biology & Evolution, 2010, v. 27, n. 7, p. 1698, doi. 10.1093/molbev/msq059
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- Article
TESTLoc: protein subcellular localization prediction from EST data.
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- BMC Bioinformatics, 2010, v. 11, p. 563, doi. 10.1186/1471-2105-11-563
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- Article
Diversity and dispersal of a ubiquitous protein family: acyl-CoA dehydrogenases.
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- Nucleic Acids Research, 2009, v. 37, n. 17, p. 5619, doi. 10.1093/nar/gkp566
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- Article
Plasticity of a key metabolic pathway in fungi.
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- Functional & Integrative Genomics, 2009, v. 9, n. 2, p. 145, doi. 10.1007/s10142-008-0095-6
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- Article
Distribution and Phylogeny of EFL and EF-1α in Euglenozoa Suggest Ancestral Co-Occurrence Followed by Differential Loss.
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- PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005162
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- Article
GOBASE: an organelle genome database.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D946, doi. 10.1093/nar/gkn819
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- Article
A Phylogenomic Investigation into the Origin of Metazoa.
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- Molecular Biology & Evolution, 2008, v. 25, n. 4, p. 664, doi. 10.1093/molbev/msn006
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- Article
Evolution of C2H2-zinc finger genes and subfamilies in mammals: Species-specific duplication and loss of clusters, genes and effector domains.
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- BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-176
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- Article
Description of Rhynchopus euleeides n. sp. (Diplonemea), a Free-Living Marine Euglenozoan.
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- Journal of Eukaryotic Microbiology, 2007, v. 54, n. 2, p. 137, doi. 10.1111/j.1550-7408.2007.00244.x
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- Article
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs).
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- Nucleic Acids Research, 2007, v. 35, p. d445, doi. 10.1093/nar/gkl770
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- Article
Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools.
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- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-420
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- Article
Comparative Analysis of Gender-Associated Complete Mitochondrial Genomes in Marine Mussels (Mytilus spp.).
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- Genetics, 2006, v. 172, n. 2, p. 1107, doi. 10.1534/genetics.105.047159
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- Article
GOBASE—a database of organelle and bacterial genome information.
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- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d697, doi. 10.1093/nar/gkj098
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- Article
The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region.
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- Nucleic Acids Research, 2005, v. 33, n. 14, p. 4433, doi. 10.1093/nar/gki757
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AutoFACT: An Automatic Functional Annotation and Classification Tool.
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- BMC Bioinformatics, 2005, v. 6, p. 1, doi. 10.1186/1471-2105-6-151
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- Article
The enigmatic mitochondrial ORF ymf39 codes for ATP synthase chain b.
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- Nucleic Acids Research, 2003, v. 31, n. 9, p. 2353, doi. 10.1093/nar/gkg326
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Parallels in Genome Evolution in Mitochondria and Bacterial Symbionts.
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- IUBMB Life, 2003, v. 55, n. 4/5, p. 205, doi. 10.1080/1521654031000137380
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- Article
AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.
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- BMC Bioinformatics, 2003, v. 4, p. 63, doi. 10.1186/1471-2105-4-63
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- Article
Structure of the bc<sub>1</sub> Complex from Seculamonas ecuadoriensis, a Jakobid Flagellate with an Ancestral Mitochondrial Genome.
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- Molecular Biology & Evolution, 2003, v. 20, n. 1, p. 145, doi. 10.1093/molbev/msg016
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- Article
GOBASE—a database of mitochondrial and chloroplast information.
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- Nucleic Acids Research, 2003, v. 31, n. 1, p. 176, doi. 10.1093/nar/gkg090
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Building a Genome Database Using an Object-Oriented Approach.
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- In Silico Biology, 2002, v. 2, n. 3, p. 213
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GOBASE: the organelle genome database.
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- Nucleic Acids Research, 2001, v. 29, n. 1, p. 128, doi. 10.1093/nar/29.1.128
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The mitochondrial genome of the stramenopile algaChrysodidymus synuroideus. Complete sequence, gene content and genome organization.
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- Nucleic Acids Research, 2000, v. 28, n. 13, p. 2512, doi. 10.1093/nar/28.13.2512
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- Article
A Comparative Genomics Approach to the Evolution of Eukaryotes and their Mitochondria.
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- Journal of Eukaryotic Microbiology, 1999, v. 46, n. 4, p. 320, doi. 10.1111/j.1550-7408.1999.tb04611.x
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- Article
Genome structure and gene content in protist mitochondrial DNAs.
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- Nucleic Acids Research, 1998, v. 26, n. 4, p. 865, doi. 10.1093/nar/26.4.865
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The Organelle Genome Database Project (GOBASE).
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- Nucleic Acids Research, 1998, v. 26, n. 1, p. 139
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An ancestral mitochondrial DNA resembling a eubacterial genome in miniature.
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- Nature, 1997, v. 387, n. 6632, p. 493, doi. 10.1038/387493a0
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- Article
UTILITY OF THE MITOCHONDRIAL <em>nad4L</em> GENE FOR ALGAL AND PROTISTAN PHYLOGENETIC ANALYSIS.
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- Journal of Phycology, 1996, v. 32, n. 3, p. 452, doi. 10.1111/j.0022-3646.1996.00452.x
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- Article