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Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop.
- Published in:
- EMBO Journal, 2002, v. 21, n. 7, p. 1811, doi. 10.1093/emboj/21.7.1811
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- Article
MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase.
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- EMBO Journal, 2002, v. 21, n. 5, p. 1139, doi. 10.1093/emboj/21.5.1139
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- Article
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 17, p. 9630, doi. 10.3390/ijms23179630
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- Article
QRNAS: software tool for refinement of nucleic acid structures.
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- BMC Structural Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12900-019-0103-1
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- Article
A homology model of restriction endonuclease SfiI in complex with DNA.
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- BMC Structural Biology, 2005, v. 5, p. 2, doi. 10.1186/1472-6807-5-2
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- Article
Co-evolution-driven switch of J-protein specificity towards an Hsp70 partner.
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- EMBO Reports, 2010, v. 11, n. 5, p. 360, doi. 10.1038/embor.2010.29
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- Article
A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.07320
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- Article
The OB-fold proteins of the Trypanosoma brucei editosome execute RNA-chaperone activity.
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- Nucleic Acids Research, 2018, v. 46, n. 19, p. 10353, doi. 10.1093/nar/gky668
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Occurrence and stability of lone pair-π stacking interactions between ribose and nucleobases in functional RNAs.
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- Nucleic Acids Research, 2017, v. 45, n. 19, p. 11019, doi. 10.1093/nar/gkx757
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- Article
SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments.
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- Nucleic Acids Research, 2017, v. 45, n. 16, p. e150, doi. 10.1093/nar/gkx631
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SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.
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- Nucleic Acids Research, 2016, v. 44, n. W1, p. W315, doi. 10.1093/nar/gkw279
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- Article
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.
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- Nucleic Acids Research, 2016, v. 44, n. 7, p. e63, doi. 10.1093/nar/gkv1479
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- Article
Structural and functional insights into tRNA binding and adenosine N1-methylation by an archaeal Trm10 homologue.
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- Nucleic Acids Research, 2016, v. 44, n. 2, p. 940, doi. 10.1093/nar/gkv1369
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- Article
An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies.
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- Nucleic Acids Research, 2015, v. 43, n. 14, p. 6714, doi. 10.1093/nar/gkv606
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- Article
NPDock: a web server for protein-nucleic acid docking.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W425, doi. 10.1093/nar/gkv493
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- Article
Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection.
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- Nucleic Acids Research, 2015, v. 43, n. 7, p. 3789, doi. 10.1093/nar/gkv225
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- Article
Sequence-specific cleavage of dsRNA by Mini-III RNase.
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- Nucleic Acids Research, 2015, v. 43, n. 5, p. 2864, doi. 10.1093/nar/gkv009
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ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.
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- Nucleic Acids Research, 2014, v. 42, n. 19, p. e151, doi. 10.1093/nar/gku765
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- Article
Structural basis of the methylation specificity of R.DpnI.
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- Nucleic Acids Research, 2014, v. 42, n. 13, p. 8745, doi. 10.1093/nar/gku546
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CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction.
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- Nucleic Acids Research, 2014, v. 42, n. 8, p. 5403, doi. 10.1093/nar/gku208
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The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification.
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- Nucleic Acids Research, 2014, v. 42, n. 7, p. 4160, doi. 10.1093/nar/gkt1414
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RNA Bricks—a database of RNA 3D motifs and their interactions.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D123, doi. 10.1093/nar/gkt1084
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QA-RecombineIt: a server for quality assessment and recombination of protein models.
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- Nucleic Acids Research, 2013, v. 41, p. W389, doi. 10.1093/nar/gkt408
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RNAlyzer—novel approach for quality analysis of RNA structural models.
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- Nucleic Acids Research, 2013, v. 41, n. 12, p. 5978, doi. 10.1093/nar/gkt318
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- Article
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction.
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- Nucleic Acids Research, 2013, v. 41, n. 7, p. 4307, doi. 10.1093/nar/gkt101
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Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid.
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- Nucleic Acids Research, 2013, v. 41, n. 6, p. 3874, doi. 10.1093/nar/gkt053
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MODOMICS: a database of RNA modification pathways—2013 update.
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- Nucleic Acids Research, 2013, v. 41, p. D262, doi. 10.1093/nar/gks1007
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RNApathwaysDB—a database of RNA maturation and decay pathways.
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- Nucleic Acids Research, 2013, v. 41, p. D268, doi. 10.1093/nar/gks1052
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- Article
Sequence-specific cleavage of the RNA strand in DNA–RNA hybrids by the fusion of ribonuclease H with a zinc finger.
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- Nucleic Acids Research, 2012, v. 40, n. 22, p. 11563, doi. 10.1093/nar/gks885
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- Article
Rational engineering of sequence specificity in R.MwoI restriction endonuclease.
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- Nucleic Acids Research, 2012, v. 40, n. 17, p. 8579, doi. 10.1093/nar/gks570
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Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII.
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- Nucleic Acids Research, 2012, v. 40, n. 16, p. 8163, doi. 10.1093/nar/gks547
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Structural bioinformatics of the human spliceosomal proteome.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7046, doi. 10.1093/nar/gks347
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- Article
Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7563, doi. 10.1093/nar/gks428
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- Article
Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
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- Nucleic Acids Research, 2012, v. 40, n. 11, p. 5149, doi. 10.1093/nar/gks163
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Novel non-specific DNA adenine methyltransferases.
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- Nucleic Acids Research, 2012, v. 40, n. 5, p. 2119, doi. 10.1093/nar/gkr1039
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- Article
Evidence for an evolutionary antagonism between Mrr and Type III modification systems.
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- Nucleic Acids Research, 2011, v. 39, n. 14, p. 5991, doi. 10.1093/nar/gkr219
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- Article
2′-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family.
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- Nucleic Acids Research, 2011, v. 39, n. 11, p. 4756, doi. 10.1093/nar/gkr038
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ModeRNA: a tool for comparative modeling of RNA 3D structure.
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- Nucleic Acids Research, 2011, v. 39, n. 10, p. 4007, doi. 10.1093/nar/gkq1320
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- Article
Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit.
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- Nucleic Acids Research, 2011, v. 39, n. 5, p. 1903, doi. 10.1093/nar/gkq1033
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REPAIRtoire—a database of DNA repair pathways.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D788, doi. 10.1093/nar/gkq1087
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- Article
New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA.
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- Nucleic Acids Research, 2010, v. 38, n. 19, p. 6533, doi. 10.1093/nar/gkq451
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- Article
Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.
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- Nucleic Acids Research, 2010, v. 38, n. 12, p. 4120, doi. 10.1093/nar/gkq122
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- Article
A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI).
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- Nucleic Acids Research, 2010, v. 38, n. 9, p. 3019, doi. 10.1093/nar/gkp1221
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Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria.
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- Nucleic Acids Research, 2010, v. 38, n. 5, p. 1652, doi. 10.1093/nar/gkp1142
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- Article
The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein.
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- Nucleic Acids Research, 2009, v. 37, n. 3, p. 762, doi. 10.1093/nar/gkn988
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- Article
MODOMICS: a database of RNA modification pathways. 2008 update.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D118, doi. 10.1093/nar/gkn710
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- Article
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.
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- Nucleic Acids Research, 2008, v. 36, n. 11, p. 3552, doi. 10.1093/nar/gkn175
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- Article
The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK).
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- Nucleic Acids Research, 2008, v. 36, n. 10, p. 3252, doi. 10.1093/nar/gkn169
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EXOG, a novel paralog of Endonuclease G in higher eukaryotes.
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- Nucleic Acids Research, 2008, v. 36, n. 4, p. 1369, doi. 10.1093/nar/gkm1169
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Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding.
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- Nucleic Acids Research, 2007, v. 35, n. 20, p. 6808, doi. 10.1093/nar/gkm574
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- Article