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GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05962-9
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- Article
Improving consensus contact prediction via server correlation reduction.
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- BMC Structural Biology, 2009, v. 9, p. 1, doi. 10.1186/1472-6807-9-28
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- Article
Improving prediction of burial state of residues by exploiting correlation among residues.
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- BMC Bioinformatics, 2017, v. 18, p. 165, doi. 10.1186/s12859-017-1475-5
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- Publication type:
- Article
Microbiome Resilience and Health Implications for People in Half-Year Travel.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.848994
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- Article
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22869-8
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- Article
Biological data processing based on bio-processor unit (BPU), a new concept for next generation computational biology.
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- SCIENCE CHINA Life Sciences, 2018, v. 61, n. 5, p. 597, doi. 10.1007/s11427-018-9278-3
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- Article
GTAM: a molecular pretraining model with geometric triangle awareness.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae524
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- Publication type:
- Article
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad650
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- Article
Accurate and efficient protein sequence design through learning concise local environment of residues.
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- Bioinformatics, 2023, v. 39, n. 3, p. 1, doi. 10.1093/bioinformatics/btad122
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- Publication type:
- Article
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction.
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- Bioinformatics, 2022, v. 38, n. 4, p. 990, doi. 10.1093/bioinformatics/btab777
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- Article
Insights into the transmission of respiratory infectious diseases through empirical human contact networks.
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- Scientific Reports, 2016, p. 31484, doi. 10.1038/srep31484
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- Article
Predicting human contacts through alternating direction method of multipliers.
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- International Journal of Modern Physics C: Computational Physics & Physical Computation, 2019, v. 30, n. 7, p. N.PAG, doi. 10.1142/S012918311940014X
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- Article
Date of origin of the SARS coronavirus strains.
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- BMC Infectious Diseases, 2004, v. 4, n. 1, p. 3, doi. 10.1186/1471-2334-4-3
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- Publication type:
- Article
Condensing Raman spectrum for single-cell phenotype analysis.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S15
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- Publication type:
- Article
OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0540-1
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- Publication type:
- Article
Incorporating Ab Initio energy into threading approaches for protein structure prediction.
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- BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S54
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- Publication type:
- Article
PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum.
- Published in:
- 2011
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- Publication type:
- Product Review
NONCODE: an integrated knowledge database of non-coding RNAs.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d112
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- Publication type:
- Article
The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast.
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- Nucleic Acids Research, 2004, v. 32, n. 16, p. 4804
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- Publication type:
- Article
Topological structure analysis of the protein–protein interaction network in budding yeast.
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- Nucleic Acids Research, 2003, v. 31, n. 9, p. 2443
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- Publication type:
- Article
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
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- Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-5
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- Publication type:
- Article
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
- Published in:
- 2019
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- Publication type:
- Correction Notice
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3051-7
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- Publication type:
- Article
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling.
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- BMC Bioinformatics, 2019, v. 20, n. 3, p. 1, doi. 10.1186/s12859-019-2652-5
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- Publication type:
- Article
NeuralGLS: learning to guide local search with graph convolutional network for the traveling salesman problem.
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- Neural Computing & Applications, 2024, v. 36, n. 17, p. 9687, doi. 10.1007/s00521-023-09042-6
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- Article
Designing succinct structural alphabets.
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- Bioinformatics, 2008, v. 24, n. 13, p. i182
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- Publication type:
- Article
Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-05952-w
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- Publication type:
- Article
Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm
- Published in:
- FEBS Letters, 2006, v. 580, n. 7, p. 1891, doi. 10.1016/j.febslet.2006.02.053
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- Publication type:
- Article
Fragment-HMM: A new approach to protein structure prediction.
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- Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 11, p. 1925, doi. 10.1110/ps.036442.108
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- Publication type:
- Article
LEX-SVM:: EXPLORING THE POTENTIAL OF EXON EXPRESSION PROFILING FOR DISEASE CLASSIFICATION.
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- Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 299, doi. 10.1142/S0219720011005513
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- Publication type:
- Article
AN ITERATIVE ALGORITHM TO QUANTIFY FACTORS INFLUENCING PEPTIDE FRAGMENTATION DURING TANDEM MASS SPECTROMETRY.
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- Journal of Bioinformatics & Computational Biology, 2007, v. 5, n. 2a, p. 297, doi. 10.1142/S0219720007002643
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- Publication type:
- Article
Best-first search guided multistage mass spectrometry-based glycan identification.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2991, doi. 10.1093/bioinformatics/btz056
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- Article
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning.
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- Bioinformatics, 2019, v. 35, n. 14, p. i284, doi. 10.1093/bioinformatics/btz367
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- Publication type:
- Article
Protein threading using residue co-variation and deep learning.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. i263, doi. 10.1093/bioinformatics/bty278
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- Publication type:
- Article
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.
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- Bioinformatics, 2017, v. 33, n. 23, p. 3749, doi. 10.1093/bioinformatics/btx514
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- Publication type:
- Article
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
- Published in:
- 2016
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- Publication type:
- Product Review
FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
- Published in:
- Bioinformatics, 2008, v. 24, n. 18, p. 1994, doi. 10.1093/bioinformatics/btn327
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- Publication type:
- Article
Multilevel structural characteristics for the natural substrate proteins of bacterial small heat shock proteins.
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- Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 2, p. 229, doi. 10.1002/pro.2404
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- Publication type:
- Article
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04448-2
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- Publication type:
- Article
FALCON2: a web server for high-quality prediction of protein tertiary structures.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04353-8
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- Publication type:
- Article
FALCON2: a web server for high-quality prediction of protein tertiary structures.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04353-8
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- Publication type:
- Article
ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03793-y
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- Publication type:
- Article