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Reply to "Quality control requirements for the correct annotation of lipidomics data".
Published in:
2021
By:
- Vasilopoulou, Catherine G.;
- Sulek, Karolina;
- Brunner, Andreas-David;
- Meitei, Ningombam Sanjib;
- Schweiger-Hufnagel, Ulrike;
- Meyer, Sven W.;
- Barsch, Aiko;
- Mann, Matthias;
- Meier, Florian
Publication type:
Letter
Deep Visual Proteomics defines single-cell identity and heterogeneity.
Published in:
Nature Biotechnology, 2022, v. 40, n. 8, p. 1231, doi. 10.1038/s41587-022-01302-5
By:
- Mund, Andreas;
- Coscia, Fabian;
- Kriston, András;
- Hollandi, Réka;
- Kovács, Ferenc;
- Brunner, Andreas-David;
- Migh, Ede;
- Schweizer, Lisa;
- Santos, Alberto;
- Bzorek, Michael;
- Naimy, Soraya;
- Rahbek-Gjerdrum, Lise Mette;
- Dyring-Andersen, Beatrice;
- Bulkescher, Jutta;
- Lukas, Claudia;
- Eckert, Mark Adam;
- Lengyel, Ernst;
- Gnann, Christian;
- Lundberg, Emma;
- Horvath, Peter
Publication type:
Article
AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.
Published in:
Bioinformatics, 2022, v. 38, n. 3, p. 849, doi. 10.1093/bioinformatics/btab674
By:
- Voytik, Eugenia;
- Bludau, Isabell;
- Willems, Sander;
- Hansen, Fynn M;
- Brunner, Andreas-David;
- Strauss, Maximilian T;
- Mann, Matthias
Publication type:
Article
Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel.
Published in:
Molecular Systems Biology, 2023, v. 19, n. 9, p. 1, doi. 10.15252/msb.202211503
By:
- Thielert, Marvin;
- Itang, Ericka CM;
- Ammar, Constantin;
- Rosenberger, Florian A;
- Bludau, Isabell;
- Schweizer, Lisa;
- Nordmann, Thierry M;
- Skowronek, Patricia;
- Wahle, Maria;
- Zeng, Wen‐Feng;
- Zhou, Xie‐Xuan;
- Brunner, Andreas‐David;
- Richter, Sabrina;
- Levesque, Mitchell P;
- Theis, Fabian J;
- Steger, Martin;
- Mann, Matthias
Publication type:
Article
Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation.
Published in:
Molecular Systems Biology, 2022, v. 18, n. 3, p. 1, doi. 10.15252/msb.202110798
By:
- Brunner, Andreas‐David;
- Thielert, Marvin;
- Vasilopoulou, Catherine;
- Ammar, Constantin;
- Coscia, Fabian;
- Mund, Andreas;
- Hoerning, Ole B;
- Bache, Nicolai;
- Apalategui, Amalia;
- Lubeck, Markus;
- Richter, Sabrina;
- Fischer, David S;
- Raether, Oliver;
- Park, Melvin A;
- Meier, Florian;
- Theis, Fabian J;
- Mann, Matthias
Publication type:
Article
Cardiac myocyte miR-29 promotes pathological remodeling of the heart by activating Wnt signaling.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01737-4
By:
- Sassi, Yassine;
- Avramopoulos, Petros;
- Ramanujam, Deepak;
- Grüter, Laurenz;
- Werfel, Stanislas;
- Giosele, Simon;
- Brunner, Andreas-David;
- Esfandyari, Dena;
- Papadopoulou, Aikaterini S.;
- De Strooper, Bart;
- Hübner, Norbert;
- Kumarswamy, Regalla;
- Thum, Thomas;
- Xiaoke Yin;
- Mayr, Manuel;
- Laggerbauer, Bernhard;
- Engelhardt, Stefan
Publication type:
Article
The Swiss Primary Hypersomnolence and Narcolepsy Cohort study (SPHYNCS): Study protocol for a prospective, multicentre cohort observational study.
Published in:
Journal of Sleep Research, 2021, v. 30, n. 5, p. 1, doi. 10.1111/jsr.13296
By:
- Dietmann, Anelia;
- Wenz, Elena;
- van der Meer, Julia;
- Ringli, Maya;
- Warncke, Jan D.;
- Edwards, Ellen;
- Schmidt, Markus H.;
- Bernasconi, Corrado A.;
- Nirkko, Arto;
- Strub, Mathias;
- Miano, Silvia;
- Manconi, Mauro;
- Acker, Jens;
- von Manitius, Sigrid;
- Baumann, Christian R.;
- Valko, Philip O.;
- Yilmaz, Bahtiyar;
- Brunner, Andreas‐David;
- Tzovara, Athina;
- Zhang, Zhongxing
Publication type:
Article
Deep learning the collisional cross sections of the peptide universe from a million experimental values.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21352-8
By:
- Meier, Florian;
- Köhler, Niklas D.;
- Brunner, Andreas-David;
- Wanka, Jean-Marc H.;
- Voytik, Eugenia;
- Strauss, Maximilian T.;
- Theis, Fabian J.;
- Mann, Matthias
Publication type:
Article
Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14044-x
By:
- Vasilopoulou, Catherine G.;
- Sulek, Karolina;
- Brunner, Andreas-David;
- Meitei, Ningombam Sanjib;
- Schweiger-Hufnagel, Ulrike;
- Meyer, Sven W.;
- Barsch, Aiko;
- Mann, Matthias;
- Meier, Florian
Publication type:
Article

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