Works by Brouns, Stan J. J.

Results: 33

Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae.
Published in:
DNA Research, 2021, v. 28, n. 4, p. 1, doi. 10.1093/dnares/dsab013
By:
- Bonilla, Estrada;
- Costa, Ana Rita;
- Berg, Daan F van den;
- Rossum, Teunke van;
- Hagedoorn, Stefan;
- Walinga, Hielke;
- Xiao, Minfeng;
- Song, Wenchen;
- Haas, Pieter-Jan;
- Nobrega, Franklin L;
- Brouns, Stan J J
Publication type:
Article
Creation of Conductive Graphene Materials by Bacterial Reduction Using Shewanella Oneidensis.
Published in:
ChemistryOpen, 2019, v. 8, n. 7, p. 888, doi. 10.1002/open.201900186
By:
- Lehner, Benjamin A. E.;
- Janssen, Vera A. E. C.;
- Spiesz, Ewa M.;
- Benz, Dominik;
- Brouns, Stan J. J.;
- Meyer, Anne S.;
- van der Zant, Herre S. J.
Publication type:
Article
Using CAPTURE to detect spacer acquisition in native CRISPR arrays.
Published in:
Nature Protocols, 2019, v. 14, n. 3, p. 976, doi. 10.1038/s41596-018-0123-5
By:
- McKenzie, Rebecca E.;
- Almendros, Cristóbal;
- Vink, Jochem N. A.;
- Brouns, Stan J. J.
Publication type:
Article
DNA-guided DNA interference by a prokaryotic Argonaute.
Published in:
Nature, 2014, v. 507, n. 7491, p. 258, doi. 10.1038/nature12971
By:
- Swarts, Daan C.;
- Jore, Matthijs M.;
- Westra, Edze R.;
- Zhu, Yifan;
- Janssen, Jorijn H.;
- Snijders, Ambrosius P.;
- Wang, Yanli;
- Patel, Dinshaw J.;
- Berenguer, José;
- Brouns, Stan J. J.;
- van der Oost, John
Publication type:
Article
Structures of the RNA-guided surveillance complex from a bacterial immune system.
Published in:
Nature, 2011, v. 477, n. 7365, p. 486, doi. 10.1038/nature10402
By:
- Wiedenheft, Blake;
- Lander, Gabriel C.;
- Zhou, Kaihong;
- Jore, Matthijs M.;
- Brouns, Stan J. J.;
- van der Oost, John;
- Doudna, Jennifer A.;
- Nogales, Eva
Publication type:
Article
Structural basis for broad anti-phage immunity by DISARM.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30673-1
By:
- Bravo, Jack P. K.;
- Aparicio-Maldonado, Cristian;
- Nobrega, Franklin L.;
- Brouns, Stan J. J.;
- Taylor, David W.
Publication type:
Article
SCOPE enables type III CRISPR-Cas diagnostics using flexible targeting and stringent CARF ribonuclease activation.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25337-5
By:
- Steens, Jurre A.;
- Zhu, Yifan;
- Taylor, David W.;
- Bravo, Jack P. K.;
- Prinsen, Stijn H. P.;
- Schoen, Cor D.;
- Keijser, Bart J. F.;
- Ossendrijver, Michel;
- Hofstra, L. Marije;
- Brouns, Stan J. J.;
- Shinkai, Akeo;
- van der Oost, John;
- Staals, Raymond H. J.
Publication type:
Article
Cascade-mediated binding and bending of negatively supercoiled DNA.
Published in:
RNA Biology, 2012, v. 9, n. 9, p. 1, doi. 10.4161/rna.21410
By:
- Westra, Edze R.;
- Nilges, Benedikt;
- van Erp, Paul B. G.;
- van der Oost, John;
- Dame, Remus T.;
- Brouns, Stan J. J.
Publication type:
Article
An educational guide for nanopore sequencing in the classroom.
Published in:
PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007314
By:
- Salazar, Alex N.;
- Nobrega, Franklin L.;
- Anyansi, Christine;
- Aparicio-Maldonado, Cristian;
- Costa, Ana Rita;
- Haagsma, Anna C.;
- Hiralal, Anwar;
- Mahfouz, Ahmed;
- McKenzie, Rebecca E.;
- van Rossum, Teunke;
- Brouns, Stan J. J.;
- Abeel, Thomas
Publication type:
Article
Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain.
Published in:
Biochemical Journal, 2014, v. 462, n. 2, p. 373, doi. 10.1042/BJ20131474
By:
- BLOMBACH, Fabian;
- LAUNAY, Helene;
- SNIJDERS, Ambrosius P. L.;
- ZORRAQUINO, Violeta;
- Hao WU;
- DE KONING, Bart;
- BROUNS, Stan J. J.;
- ETTEMA, Thijs J. G.;
- CAMILLONI, Carlo;
- CAVALLI, Andrea;
- VENDRUSCOLO, Michele;
- DICKMAN, Mark J.;
- CABRITA, Lisa D.;
- LA TEANA, Anna;
- BENELLI, Dario;
- LONDEI, Paola;
- CHRISTODOULOU, John;
- VAN DER OOST, John
Publication type:
Article
Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR-Cas system.
Published in:
Nature Communications, 2016, v. 7, n. 10, p. 12853, doi. 10.1038/ncomms12853
By:
- Staals, Raymond H. J.;
- Jackson, Simon A.;
- Biswas, Ambarish;
- Brouns, Stan J. J.;
- Brown, Chris M.;
- Fineran, Peter C.
Publication type:
Article
Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages.
Published in:
Viruses (1999-4915), 2019, v. 11, n. 12, p. 1085, doi. 10.3390/v11121085
By:
- de Jonge, Patrick A.;
- von Meijenfeldt, F. A. Bastiaan;
- van Rooijen, Laura E.;
- Brouns, Stan J. J.;
- Dutilh, Bas E.
Publication type:
Article
Iron can be microbially extracted from Lunar and Martian regolith simulants and 3D printed into tough structural materials.
Published in:
PLoS ONE, 2021, v. 16, n. 4, p. 1, doi. 10.1371/journal.pone.0249962
By:
- Castelein, Sofie M.;
- Aarts, Tom F.;
- Schleppi, Juergen;
- Hendrikx, Ruud;
- Böttger, Amarante J.;
- Benz, Dominik;
- Marechal, Maude;
- Makaya, Advenit;
- Brouns, Stan J. J.;
- Schwentenwein, Martin;
- Meyer, Anne S.;
- Lehner, Benjamin A. E.
Publication type:
Article
Type I-E CRISPR-Cas Systems Discriminate Target from Non-Target DNA through Base Pairing-Independent PAM Recognition.
Published in:
PLoS Genetics, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pgen.1003742
By:
- Westra, Edze R.;
- Semenova, Ekaterina;
- Datsenko, Kirill A.;
- Jackson, Ryan N.;
- Wiedenheft, Blake;
- Severinov, Konstantin;
- Brouns, Stan J. J.
Publication type:
Article
Comparative Genomic and Functional Analysis of 100 <i>Lactobacillus rhamnosus</i> Strains and Their Comparison with Strain GG.
Published in:
PLoS Genetics, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pgen.1003683
By:
- Douillard, François P.;
- Ribbera, Angela;
- Kant, Ravi;
- Pietilä, Taija E.;
- Järvinen, Hanna M.;
- Messing, Marcel;
- Randazzo, Cinzia L.;
- Paulin, Lars;
- Laine, Pia;
- Ritari, Jarmo;
- Caggia, Cinzia;
- Lähteinen, Tanja;
- Brouns, Stan J. J.;
- Satokari, Reetta;
- von Ossowski, Ingemar;
- Reunanen, Justus;
- Palva, Airi;
- de Vos, Willem M.
Publication type:
Article
An updated evolutionary classification of CRISPR-Cas systems.
Published in:
Nature Reviews Microbiology, 2015, v. 13, n. 11, p. 722, doi. 10.1038/nrmicro3569
By:
- Makarova, Kira S.;
- Wolf, Yuri I.;
- Alkhnbashi, Omer S.;
- Costa, Fabrizio;
- Shah, Shiraz A.;
- Saunders, Sita J.;
- Barrangou, Rodolphe;
- Brouns, Stan J. J.;
- Charpentier, Emmanuelle;
- Haft, Daniel H.;
- Horvath, Philippe;
- Moineau, Sylvain;
- Mojica, Francisco J. M.;
- Terns, Rebecca M.;
- Terns, Michael P.;
- White, Malcolm F.;
- Yakunin, Alexander F.;
- Garrett, Roger A.;
- van der Oost, John;
- Backofen, Rolf
Publication type:
Article
Evolution and classification of the CRISPR-Cas systems.
Published in:
2011
By:
- Makarova, Kira S.;
- Haft, Daniel H.;
- Barrangou, Rodolphe;
- Brouns, Stan J. J.;
- Charpentier, Emmanuelle;
- Horvath, Philippe;
- Moineau, Sylvain;
- Mojica, Francisco J. M.;
- Wolf, Yuri I.;
- Yakunin, Alexander F.;
- van der Oost, John;
- Koonin, Eugene V.
Publication type:
Opinion
PAM-repeat associations and spacer selection preferences in single and co-occurring CRISPR-Cas systems.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02495-9
By:
- Vink, Jochem N. A.;
- Baijens, Jan H. L.;
- Brouns, Stan J. J.
Publication type:
Article
Systematic analysis of Type I‐E Escherichia coli CRISPR‐Cas PAM sequences ability to promote interference and primed adaptation.
Published in:
Molecular Microbiology, 2019, v. 111, n. 6, p. 1558, doi. 10.1111/mmi.14237
By:
- Sitnik, Vasily;
- Krivoy, Andrey;
- Fedorov, Ivan;
- Musharova, Olga;
- Savitskaya, Ekaterina;
- Severinov, Konstantin;
- Vlot, Marnix;
- Brouns, Stan J. J.;
- Datsenko, Kirill A.;
- Semenova, Ekaterina
Publication type:
Article
The rise and fall of CRISPRs - dynamics of spacer acquisition and loss.
Published in:
Molecular Microbiology, 2012, v. 85, n. 6, p. 1021, doi. 10.1111/j.1365-2958.2012.08170.x
By:
- Westra, Edze R.;
- Brouns, Stan J. J.
Publication type:
Article
H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO.
Published in:
Molecular Microbiology, 2010, v. 77, n. 6, p. 1380, doi. 10.1111/j.1365-2958.2010.07315.x
By:
- Westra, Edze R.;
- Pul, Ümit;
- Heidrich, Nadja;
- Jore, Matthijs M.;
- Lundgren, Magnus;
- Stratmann, Thomas;
- Wurm, Reinhild;
- Raine, Amanda;
- Mescher, Melina;
- Heereveld, Luc van;
- Mastop, Marieke;
- Wagner, E. Gerhart H.;
- Schnetz, Karin;
- Van der Oost, John;
- Wagner, Rolf;
- Brouns, Stan J. J.
Publication type:
Article
Visualisation of dCas9 target search in vivo using an open-microscopy framework.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11514-0
By:
- Martens, Koen J. A.;
- van Beljouw, Sam P. B.;
- van der Els, Simon;
- Vink, Jochem N. A.;
- Baas, Sander;
- Vogelaar, George A.;
- Brouns, Stan J. J.;
- van Baarlen, Peter;
- Kleerebezem, Michiel;
- Hohlbein, Johannes
Publication type:
Article
CRISPR sabotage.
Published in:
Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0820-0
By:
- van der Oost, John;
- Brouns, Stan J. J.
Publication type:
Article
CRISPR-controlled proteases.
Published in:
Biochemical Society Transactions, 2024, v. 52, n. 1, p. 441, doi. 10.1042/BST20230962
By:
- van Beljouw, Sam P. B.;
- Brouns, Stan J. J.
Publication type:
Article
Single cell variability of CRISPR‐Cas interference and adaptation.
Published in:
Molecular Systems Biology, 2022, v. 18, n. 4, p. 1, doi. 10.15252/msb.202110680
By:
- McKenzie, Rebecca E;
- Keizer, Emma M;
- Vink, Jochem N A;
- van Lopik, Jasper;
- Büke, Ferhat;
- Kalkman, Vera;
- Fleck, Christian;
- Tans, Sander J;
- Brouns, Stan J J
Publication type:
Article
Prophages are associated with extensive CRISPR–Cas auto-immunity.
Published in:
Nucleic Acids Research, 2020, v. 48, n. 21, p. 12074, doi. 10.1093/nar/gkaa1071
By:
- Nobrega, Franklin L;
- Walinga, Hielke;
- Dutilh, Bas E;
- Brouns, Stan J J
Publication type:
Article
Cas4–Cas1 fusions drive efficient PAM selection and control CRISPR adaptation.
Published in:
Nucleic Acids Research, 2019, v. 47, n. 10, p. 5223, doi. 10.1093/nar/gkz217
By:
- Almendros, Cristóbal;
- Nobrega, Franklin L;
- McKenzie, Rebecca E;
- Brouns, Stan J J
Publication type:
Article
CRISPR interference and priming varies with individual spacer sequences.
Published in:
Nucleic Acids Research, 2015, v. 43, n. 22, p. 10831, doi. 10.1093/nar/gkv1259
By:
- Chaoyou Xue;
- Seetharam, Arun S.;
- Musharova, Olga;
- Severinov, Konstantin;
- Brouns, Stan J. J.;
- Severin, Andrew J.;
- Sashital, Dipali G.
Publication type:
Article
A capture approach for supercoiled plasmid DNA using a triplex-forming oligonucleotide.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 10, p. e111, doi. 10.1093/nar/gkt239
By:
- Ruigrok, Vincent J. B.;
- Westra, Edze R.;
- Brouns, Stan J. J.;
- Escudé, Christophe;
- Smidt, Hauke;
- van der Oost, John
Publication type:
Article
Structural basis for CRISPR RNA-guided DNA recognition by Cascade.
Published in:
Nature Structural & Molecular Biology, 2011, v. 18, n. 5, p. 529, doi. 10.1038/nsmb.2019
By:
- Jore, Matthijs M.;
- Lundgren, Magnus;
- van Duijn, Esther;
- Bultema, Jelle B.;
- Westra, Edze R.;
- Waghmare, Sakharam .P;
- Wiedenheft, Blake;
- Pul, Ümit;
- Wurm, Reinhild;
- Wagner, Rolf;
- Beijer, Marieke R.;
- Barendregt, Arjan;
- Kaihong Zhou;
- Snijders, Ambrosius P. L.;
- Dickman, Mark J.;
- Doudna, Jennifer A.;
- Boekema, Egbert J.;
- Heck, Albert J. R.;
- van der Oost, John;
- Brouns, Stan J. J.
Publication type:
Article
Laboratory evolution of Pyrococcus furiosus alcohol dehydrogenase to improve the production of (2S,5S)-hexanediol at moderate temperatures.
Published in:
Extremophiles, 2008, v. 12, n. 4, p. 587, doi. 10.1007/s00792-008-0164-8
By:
- Machielsen, Ronnie;
- Leferink, Nicole G. H.;
- Hendriks, Annemarie;
- Brouns, Stan J. J.;
- Hennemann, Hans-Georg;
- Dauβmann, Thomas;
- Van Der Oost, John
Publication type:
Article
Monitoring phage-induced lysis of gram-negatives in real time using a fluorescent DNA dye.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-27734-w
By:
- Egido, Julia E.;
- Toner-Bartelds, Catherine;
- Costa, Ana Rita;
- Brouns, Stan J. J.;
- Rooijakkers, Suzan H. M.;
- Bardoel, Bart W.;
- Haas, Pieter-Jan
Publication type:
Article
CRISPR Interference Directs Strand Specific Spacer Acquisition.
Published in:
PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035888
By:
- Swarts, Daan C.;
- Mosterd, Cas;
- van Passel, Mark W. J.;
- Brouns, Stan J. J.
Publication type:
Article