Works by Brooks, James D.

Results: 119

Risk of anxiety disorders in men with prostate cancer: a national cohort study.

Published in:

JNCI Cancer Spectrum, 2024, v. 8, n. 5, p. 1, doi. 10.1093/jncics/pkae087

By:

Crump, Casey;
Stattin, Pär;
Brooks, James D;
Sundquist, Jan;
Sundquist, Kristina;
Sieh, Weiva

Publication type:

Article

Risks of alcohol and drug use disorders in prostate cancer survivors: a national cohort study.

Published in:

JNCI Cancer Spectrum, 2023, v. 7, n. 4, p. 1, doi. 10.1093/jncics/pkad046

By:

Crump, Casey;
Stattin, Pär;
Brooks, James D;
Sundquist, Jan;
Edwards, Alexis C;
Sieh, Weiva;
Sundquist, Kristina

Publication type:

Article

Critical evaluation of artificial intelligence as a digital twin of pathologists for prostate cancer pathology.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-55228-w

By:

Eminaga, Okyaz;
Abbas, Mahmoud;
Kunder, Christian;
Tolkach, Yuri;
Han, Ryan;
Brooks, James D.;
Nolley, Rosalie;
Semjonow, Axel;
Boegemann, Martin;
West, Robert;
Long, Jin;
Fan, Richard E.;
Bettendorf, Olaf

Publication type:

Article

Identification and characterization of intact glycopeptides in human urine.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-53299-3

By:

Garcia-Marques, Fernando;
Fuller, Keely;
Bermudez, Abel;
Shamsher, Nikhiya;
Zhao, Hongjuan;
Brooks, James D.;
Flory, Mark R.;
Pitteri, Sharon J.

Publication type:

Article

A promoting role of androgen receptor in androgen-sensitive and -insensitive prostate cancer cells.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 8, p. 2767, doi. 10.1093/nar/gkm198

By:

Li, Tzu-Huey;
Zhao, Hongjuan;
Peng, Yue;
Beliakoff, Jason;
Brooks, James D.;
Sun, Zijie

Publication type:

Article

Identification of Molecular Subtypes of Clear-Cell Renal Cell Carcinoma in Patient-Derived Xenografts Using Multi-Omics.

Published in:

Cancers, 2025, v. 17, n. 8, p. 1361, doi. 10.3390/cancers17081361

By:

Qiu, Zhengyuan;
Zhang, Dalin;
Garcia-Marques, Fernando Jose;
Bermudez, Abel;
Zhao, Hongjuan;
Peehl, Donna M.;
Pitteri, Sharon J.;
Brooks, James D.

Publication type:

Article

The Role of MARCKS in Metastasis and Treatment Resistance of Solid Tumors.

Published in:

Cancers, 2022, v. 14, n. 19, p. 4925, doi. 10.3390/cancers14194925

By:

Chiu, Chun-Lung;
Zhao, Hongjuan;
Chen, Ching-Hsien;
Wu, Reen;
Brooks, James D.

Publication type:

Article

Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape.

Published in:

Genome Biology, 2013, v. 14, n. 9, p. 1, doi. 10.1186/gb-2013-14-9-r102

By:

Day, Kenneth;
Waite, Lindsay L.;
Thalacker-Mercer, Anna;
West, Andrew;
Bamman, Marcas M.;
Brooks, James D.;
Myers, Richard M.;
Absher, Devin

Publication type:

Article

Impact of Prostate Health Index Results for Prediction of Biopsy Grade Reclassification During Active Surveillance.

Published in:

AUANews, 2022, v. 27, p. 11

By:

Filson, Christopher P.;
Kehao Zhu;
Yijian Huang;
Yingye Zheng;
Newcomb, Lisa F.;
Williams, Sierra;
Brooks, James D.;
Carroll, Peter R.;
Dash, Atreya;
Ellis, William J.;
Gleave, Martin E.;
Liss, Michael A.;
Martin, Frances;
McKenney, Jesse K.;
Morgan, Todd M.;
Wagner, Andrew A.;
Sokoll, Lori J.;
Sanda, Martin G.;
Chan, Daniel W.;
Lin, Daniel W.

Publication type:

Article

Room for Improvement: Discontinuation, Reporting and Publication of Clinical Trials in Urology.

Published in:

AUANews, 2021, v. 26, n. 4, p. 26

By:

Magnani, Christopher J.;
Brooks, James D.

Publication type:

Article

ACAA2 is a novel molecular indicator for cancers with neuroendocrine phenotype.

Published in:

British Journal of Cancer, 2023, v. 129, n. 11, p. 1818, doi. 10.1038/s41416-023-02448-y

By:

Shen, Michelle;
Liu, Shiqin;
Toland, Angus;
Hsu, En-Chi;
Hartono, Alifiani B.;
Alabi, Busola R.;
Aslan, Merve;
Nguyen, Holly M.;
Sessions, Conner J.;
Nolley, Rosalie;
Shi, Chanjuan;
Huang, Jiaoti;
Brooks, James D.;
Corey, Eva;
Stoyanova, Tanya

Publication type:

Article

Discovery of PTN as a serum-based biomarker of pro-metastatic prostate cancer.

Published in:

2021

By:

Liu, Shiqin;
Shen, Michelle;
Hsu, En-Chi;
Zhang, Chiyuan Amy;
Garcia-Marques, Fernando;
Nolley, Rosalie;
Koul, Kashyap;
Rice, Meghan A.;
Aslan, Merve;
Pitteri, Sharon J.;
Massie, Charlie;
George, Anne;
Brooks, James D.;
Gnanapragasam, Vincent J.;
Stoyanova, Tanya

Publication type:

journal article

Gene Expression Profiling Predicts Survival in Conventional Renal Cell Carcinoma.

Published in:

PLoS Medicine, 2006, v. 3, n. 1, p. e13, doi. 10.1371/journal.pmed.0030013

By:

Hongjuan Zhao;
Ljungberg, Börje;
Grankvist, Kjell;
Rasmuson, Torgny;
Tibshirani, Robert;
Brooks, James D.

Publication type:

Article

Mixture component effects on the in vitro dermal absorption of pentachlorophenol.

Published in:

Archives of Toxicology, 2001, v. 75, n. 6, p. 329, doi. 10.1007/s002040100242

By:

Riviere, Jim E.;
Qiao, Guilin;
Baynes, Ronald E.;
Brooks, James D.;
Mumtaz, Moiz

Publication type:

Article

Clinical Documentation to Predict Factors Associated with Urinary Incontinence Following Prostatectomy for Prostate Cancer.

Published in:

Research & Reports in Urology, 2020, v. 12, p. 7, doi. 10.2147/RRU.S234178

By:

Li, Kevin;
Banerjee, Imon;
Magnani, Christopher J;
Blayney, Douglas W;
Brooks, James D;
Hernandez-Boussard, Tina

Publication type:

Article

Performance of multiparametric MRI appears better when measured in patients who undergo radical prostatectomy.

Published in:

Research & Reports in Urology, 2018, v. 10, p. 233, doi. 10.2147/RRU.S178064

By:

Wang, Nancy N;
Fan, Richard E;
Leppert, John T;
Ghanouni, Pejman;
Kunder, Christian A;
Brooks, James D;
Chung, Benjamin I;
Sonn, Geoffrey A

Publication type:

Article

Length of site-specific positive surgical margins as a risk factor for biochemical recurrence following radical prostatectomy.

Published in:

International Journal of Urology, 2011, v. 18, n. 4, p. 272, doi. 10.1111/j.1442-2042.2011.02729.x

By:

Hsu, Mark;
Chang, Steven L.;
Ferrari, Michelle;
Nolley, Rosalie;
Presti Jr, Joseph C.;
Brooks, James D.

Publication type:

Article

MCM2-7 complex is a novel druggable target for neuroendocrine prostate cancer.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92552-x

By:

Hsu, En-Chi;
Shen, Michelle;
Aslan, Merve;
Liu, Shiqin;
Kumar, Manoj;
Garcia-Marques, Fernando;
Nguyen, Holly M.;
Nolley, Rosalie;
Pitteri, Sharon J.;
Corey, Eva;
Brooks, James D.;
Stoyanova, Tanya

Publication type:

Article

Discovery of CASP8 as a potential biomarker for high-risk prostate cancer through a high-multiplex immunoassay.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87155-5

By:

Liu, Shiqin;
Garcia-Marques, Fernando;
Zhang, Chiyuan Amy;
Lee, Jordan John;
Nolley, Rosalie;
Shen, Michelle;
Hsu, En-Chi;
Aslan, Merve;
Koul, Kashyap;
Pitteri, Sharon J.;
Brooks, James D.;
Stoyanova, Tanya

Publication type:

Article

Incidence and Pitfalls of Adipose Tissue Encountered in Prostatic Transurethral Resections and Related Specimens.

Published in:

International Journal of Surgical Pathology, 2025, v. 33, n. 2, p. 375, doi. 10.1177/10668969241265032

By:

Wu, Douglas Jian-Xian;
Brooks, James D.;
Rizkalla, Carol;
Sangoi, Ankur R.

Publication type:

Article

Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns.

Published in:

2017

By:

Kirby, Marie K.;
Ramaker, Ryne C.;
Roberts, Brian S.;
Lasseigne, Brittany N.;
Gunther, David S.;
Burwell, Todd C.;
Davis, Nicholas S.;
Gulzar, Zulfiqar G.;
Absher, Devin M.;
Cooper, Sara J.;
Brooks, James D.;
Myers, Richard M.

Publication type:

journal article

Distinctive gene expression of prostatic stromal cells cultured from diseased versus normal tissues.

Published in:

Journal of Cellular Physiology, 2007, v. 210, n. 1, p. 111, doi. 10.1002/jcp.20828

By:

Zhao, Hongjuan;
Ramos, Cristiane F.;
Brooks, James D.;
Peehl, Donna M.

Publication type:

Article

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2023.1296667

By:

Karageorgos, Grigorios M.;
Sanghee Cho;
McDonough, Elizabeth;
Chadwick, Chrystal;
Ghose, Soumya;
Owens, Jonathan;
Kyeong Joo Jung;
Machiraju, Raghu;
West, Robert;
Brooks, James D.;
Mallick, Parag;
Ginty, Fiona

Publication type:

Article

Pharmacokinetics of <sup>14</sup>C-ortho-phenylphenol following intravenous administration in pigs.

Published in:

Journal of Applied Toxicology, 2017, v. 37, n. 4, p. 508, doi. 10.1002/jat.3380

By:

Nixon, Emma;
Brooks, James D.;
Routh, Patricia A.;
Chittenden, Jason T.;
Baynes, Ronald E.

Publication type:

Article

Skin absorption of six performance amines used in metalworking fluids.

Published in:

Journal of Applied Toxicology, 2015, v. 35, n. 5, p. 520, doi. 10.1002/jat.3056

By:

Roux, Lauriane N.;
Brooks, James D.;
Yeatts, James L.;
Baynes, Ronald E.

Publication type:

Article

In vitro biodistribution of silver nanoparticles in isolated perfused porcine skin flaps.

Published in:

Journal of Applied Toxicology, 2012, v. 32, n. 11, p. 913, doi. 10.1002/jat.2750

By:

Leavens, Teresa L.;
Monteiro-Riviere, Nancy A.;
Inman, Alfred O.;
Brooks, James D.;
Oldenburg, Steven J.;
Riviere, Jim E.

Publication type:

Article

Oncogene-mediated metabolic gene signature predicts breast cancer outcome.

Published in:

NPJ Breast Cancer, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41523-021-00341-6

By:

Aslan, Merve;
Hsu, En-Chi;
Garcia-Marques, Fernando J.;
Bermudez, Abel;
Liu, Shiqin;
Shen, Michelle;
West, Meredith;
Zhang, Chiyuan Amy;
Rice, Meghan A.;
Brooks, James D.;
West, Robert;
Pitteri, Sharon J.;
Győrffy, Balázs;
Stoyanova, Tanya

Publication type:

Article

Dietary Patterns and Risk of Gleason Grade Progression among Men on Active Surveillance for Prostate Cancer: Results from the Canary Prostate Active Surveillance Study.

Published in:

Nutrition & Cancer, 2023, v. 75, n. 2, p. 618, doi. 10.1080/01635581.2022.2143537

By:

Schenk, Jeannette M.;
Liu, Menghan;
Neuhouser, Marian L.;
Newcomb, Lisa F.;
Zheng, Yingye;
Zhu, Kehao;
Brooks, James D.;
Carroll, Peter R.;
Dash, Atreya;
Ellis, William J.;
Filson, Christopher P.;
Gleave, Martin E.;
Liss, Michael;
Martin, Frances M.;
Morgan, Todd M.;
Wagner, Andrew A.;
Lin, Daniel W.

Publication type:

Article

MUC1 Expression by Immunohistochemistry Is Associated with Adverse Pathologic Features in Prostate Cancer: A Multi-Institutional Study.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0165236

By:

Eminaga, Okyaz;
Wei, Wei;
Hawley, Sarah J.;
Auman, Heidi;
Newcomb, Lisa F.;
Simko, Jeff;
Hurtado-Coll, Antonio;
Troyer, Dean A.;
Carroll, Peter R.;
Gleave, Martin E.;
Lin, Daniel W.;
Nelson, Peter S.;
Thompson, Ian M.;
True, Lawrence D.;
McKenney, Jesse K.;
Feng, Ziding;
Fazli, Ladan;
Brooks, James D.

Publication type:

Article

Molecular genetics and chromosomal alterations in prostate cancer.

Published in:

Cancer (0008543X), 1995, v. 75, n. S7, p. 2004, doi. 10.1002/1097-0142(19950401)75:7+<2004::AID-CNCR2820751642>3.0.CO;2-Q

By:

Isaacs, William B.;
Bova, G. Steven;
Morton, Ronald A.;
Bussemakers, Marion J. G.;
Brooks, James D.;
Ewing, Charles M.

Publication type:

Article

Apolipoprotein D (APOD) is a putative biomarker of androgen receptor function in androgen insensitivity syndrome.

Published in:

Journal of Molecular Medicine, 2009, v. 87, n. 6, p. 623, doi. 10.1007/s00109-009-0462-3

By:

Appari, Mahesh;
Werner, Ralf;
Wünsch, Lutz;
Cario, Gunnar;
Demeter, Janos;
Hiort, Olaf;
Riepe, Felix;
Brooks, James D.;
Holterhus, Paul-Martin

Publication type:

Article

Cell-line and tissue-specific signatures of androgen receptor-coregulator transcription.

Published in:

Journal of Molecular Medicine, 2006, v. 84, n. 11, p. 919, doi. 10.1007/s00109-006-0081-1

By:

Bebermeier, Jan-Hendrik;
Brooks, James D.;
DePrimo, Samuel E.;
Werner, Ralf;
Deppe, Uta;
Demeter, Janos;
Hiort, Olaf;
Holterhus, Paul-Martin

Publication type:

Article

Aggressiveness classification of clear cell renal cell carcinoma using registration‐independent radiology‐pathology correlation learning.

Published in:

Medical Physics, 2025, v. 52, n. 1, p. 300, doi. 10.1002/mp.17476

By:

Bhattacharya, Indrani;
Stacke, Karin;
Chan, Emily;
Lee, Jeong Hoon;
Tse, Justin R.;
Liang, Tie;
Brooks, James D.;
Sonn, Geoffrey A.;
Rusu, Mirabela

Publication type:

Article

Bridging the gap between prostate radiology and pathology through machine learning.

Published in:

Medical Physics, 2022, v. 49, n. 8, p. 5160, doi. 10.1002/mp.15777

By:

Bhattacharya, Indrani;
Lim, David S.;
Aung, Han Lin;
Liu, Xingchen;
Seetharaman, Arun;
Kunder, Christian A.;
Shao, Wei;
Soerensen, Simon J. C.;
Fan, Richard E.;
Ghanouni, Pejman;
To'o, Katherine J.;
Brooks, James D.;
Sonn, Geoffrey A.;
Rusu, Mirabela

Publication type:

Article

Identification of diagnostic metabolic signatures in clear cell renal cell carcinoma using mass spectrometry imaging.

Published in:

International Journal of Cancer, 2020, v. 147, n. 1, p. 256, doi. 10.1002/ijc.32843

By:

Vijayalakshmi, Kanchustambham;
Shankar, Vishnu;
Bain, Ryan M.;
Nolley, Rosalie;
Sonn, Geoffrey A.;
Kao, Chia‐Sui;
Zhao, Hongjuan;
Tibshirani, Robert;
Zare, Richard N.;
Brooks, James D.

Publication type:

Article

The Swedish prostate cancer paradox.

Published in:

1997

By:

Walsh, Patrick C.;
Brooks, James D.

Publication type:

Editorial

Improved detection of prostate cancer using a magneto-nanosensor assay for serum circulating autoantibodies.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0221051

By:

Xu, Lingyun;
Lee, Jung-Rok;
Hao, Shiying;
Ling, Xuefeng Bruce;
Brooks, James D.;
Wang, Shan X.;
Gambhir, Sanjiv Sam

Publication type:

Article

Treatment in the absence of disease reclassification among men on active surveillance for prostate cancer.

Published in:

Cancer (0008543X), 2022, v. 128, n. 2, p. 269, doi. 10.1002/cncr.33911

By:

Kirk, Peter S.;
Zhu, Kehao;
Zheng, Yingye;
Newcomb, Lisa F.;
Schenk, Jeannette M.;
Brooks, James D.;
Carroll, Peter R.;
Dash, Atreya;
Ellis, William J.;
Filson, Christopher P.;
Gleave, Martin E.;
Liss, Michael;
Martin, Frances;
McKenney, Jesse K.;
Morgan, Todd M.;
Nelson, Peter S.;
Thompson, Ian M.;
Wagner, Andrew A.;
Lin, Daniel W.;
Gore, John L.

Publication type:

Article

Laboratory‐wide association study of survival with prostate cancer.

Published in:

Cancer (0008543X), 2021, v. 127, n. 7, p. 1102, doi. 10.1002/cncr.33341

By:

Sohlberg, Ericka M.;
Thomas, I‐Chun;
Yang, Jaden;
Kapphahn, Kristopher;
Velaer, Kyla N.;
Goldstein, Mary K.;
Wagner, Todd H.;
Chertow, Glenn M.;
Brooks, James D.;
Patel, Chirag J.;
Desai, Manisha;
Leppert, John T.

Publication type:

Article

Distribution of global health measures from routinely collected PROMIS surveys in patients with breast cancer or prostate cancer.

Published in:

2019

By:

Seneviratne, Martin G.;
Bozkurt, Selen;
Patel, Manali I.;
Seto, Tina;
Brooks, James D.;
Blayney, Douglas W.;
Kurian, Allison W.;
Hernandez‐Boussard, Tina;
Hernandez-Boussard, Tina

Publication type:

journal article

Trends in incidence and 5-year mortality in men with newly diagnosed, metastatic prostate cancer-A population-based analysis of 2 national cohorts.

Published in:

2018

By:

Helgstrand, John T.;
Røder, Martin A.;
Klemann, Nina;
Toft, Birgitte G.;
Lichtensztajn, Daphne Y.;
Brooks, James D.;
Brasso, Klaus;
Vainer, Ben;
Iversen, Peter

Publication type:

journal article

Reply to being a widower may be an indication for routine prostate-specific antigen screening above age 69 years, which the American Urological Association recommends as a cutoff point.

Published in:

2016

By:

Gomez, Scarlett Lin;
Martínez, María Elena;
Brooks, James D.;
Cheng, Iona;
Lichtensztajn, Daphne;
Murphy, James D.;
Martínez, María Elena

Publication type:

Letter

Managing localized prostate cancer in the era of prostate-specific antigen screening.

Published in:

Cancer (0008543X), 2013, v. 119, n. 22, p. 3906, doi. 10.1002/cncr.28301

By:

Brooks, James D.

Publication type:

Article

Patient and physician perspectives on treatments for low-risk prostate cancer: a qualitative study.

Published in:

BMC Cancer, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12885-023-11679-4

By:

Guan, Alice;
Santiago-Rodríguez, Eduardo J.;
Chung, Benjamin I.;
Shim, Janet K.;
Allen, Laura;
Kuo, Mei-Chin;
Lau, Kathie;
Loya, Zinnia;
Brooks, James D.;
Cheng, Iona;
DeRouen, Mindy C.;
Frosch, Dominick L.;
Golden, Todd;
Leppert, John T.;
Lichtensztajn, Daphne Y.;
Lu, Qian;
Oh, Debora;
Sieh, Weiva;
Wadhwa, Michelle;
Cooperberg, Matthew R.

Publication type:

Article

A Transcriptional Profile of Aging in the Human Kidney.

Published in:

PLoS Biology, 2004, v. 2, n. 12, p. 2191, doi. 10.1371/journal.pbio.0020427

By:

Rodwell, Graham E. J.;
Sonu, Rebecca;
Zahn, Jacob M.;
Lund, James;
Wilhelmy, Julie;
Wang, Lingli;
Wenzhong Xiao;
Mindrinos, Michael;
Crane, Emily;
Segal, Eran;
Myers, Bryan D.;
Brooks, James D.;
Davis, Ronald W.;
Higgins, John;
Owen, Art B.;
Kim, Stuart K.

Publication type:

Article

A Transcriptional Profile of Aging in the Human Kidney.

Published in:

PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0020427

By:

Rodwell, Graham E. J;
Sonu, Rebecca;
Zahn, Jacob M;
Lund, James;
Wilhelmy, Julie;
Wang, Lingli;
Xiao, Wenzhong;
Mindrinos, Michael;
Crane, Emily;
Segal, Eran;
Myers, Bryan D;
Brooks, James D;
Davis, Ronald W;
Higgins, John;
Owen, Art B;
Kim, Stuart K

Publication type:

Article

Testicular cancer in Hispanics: incidence of subtypes over time according to neighborhood sociodemographic factors in California.

Published in:

2020

By:

DeRouen, Mindy C.;
McKinley, Meg;
Shah, Sumit Anil;
Borno, Hala T.;
Aoki, Rhonda;
Lichtensztajn, Daphne Y.;
Leppert, John T.;
Brooks, James D.;
Chung, Benjamin I.;
Gomez, Scarlett Lin;
Cheng, Iona

Publication type:

journal article

Diverse patient trajectories during cytotoxic chemotherapy: Capturing longitudinal patient‐reported outcomes.

Published in:

Cancer Medicine, 2021, v. 10, n. 17, p. 5783, doi. 10.1002/cam4.4124

By:

Azad, Amee D.;
Yilmaz, Melih;
Bozkurt, Selen;
Brooks, James D.;
Blayney, Douglas W.;
Hernandez‐Boussard, Tina

Publication type:

Article

Association between patient‐initiated emails and overall 2‐year survival in cancer patients undergoing chemotherapy: Evidence from the real‐world setting.

Published in:

Cancer Medicine, 2020, v. 9, n. 22, p. 8552, doi. 10.1002/cam4.3483

By:

Coquet, Jean;
Blayney, Douglas W.;
Brooks, James D.;
Hernandez‐Boussard, Tina

Publication type:

Article

Early detection of unilateral ureteral obstruction by desorption electrospray ionization mass spectrometry.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47396-x

By:

Banerjee, Shibdas;
Wong, Anny Chuu-Yun;
Yan, Xin;
Wu, Bo;
Zhao, Hongjuan;
Tibshirani, Robert J.;
Zare, Richard N.;
Brooks, James D.

Publication type:

Article