Works by Brinkman, Ryan R.


Results: 53
    1

    Evidence for a modifier of onset age in Huntington disease linked to the HD gene in 4p16.

    Published in:
    Neurogenetics, 2004, v. 5, n. 2, p. 109, doi. 10.1007/s10048-004-0175-2
    By:
    • Djoussé, Luc;
    • Knowlton, Beth;
    • Hayden, Michael R.;
    • Almqvist, Elisabeth W.;
    • Brinkman, Ryan R.;
    • Ross, Christopher A.;
    • Margolis, Russel L.;
    • Rosenblatt, Adam;
    • Durr, Alexandra;
    • Dode, Catherine;
    • Morrison, Patrick J.;
    • Novelletto, Andrea;
    • Frontali, Marina;
    • Trent, Ronald J.A.;
    • McCusker, Elizabeth;
    • Gómez-Tortosa, Estrella;
    • Cabrero, David Mayo;
    • Jones, Randi;
    • Zanko, Andrea;
    • Nance, Martha
    Publication type:
    Article
    2

    Deep profiling of multitube flow cytometry data.

    Published in:
    Bioinformatics, 2015, v. 31, n. 10, p. 1623, doi. 10.1093/bioinformatics/btv008
    By:
    • O'Neill, Kieran;
    • Aghaeepour, Nima;
    • Parker, Jeremy;
    • Hogge, Donna;
    • Karsan, Aly;
    • Dalal, Bakul;
    • Brinkman, Ryan R.
    Publication type:
    Article
    3

    flowCL: ontology-based cell population labelling in flow cytometry.

    Published in:
    Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807
    By:
    • Courtot, Mélanie;
    • Meskas, Justin;
    • Diehl, Alexander D.;
    • Droumeva, Radina;
    • Gottardo, Raphael;
    • Jalali, Adrin;
    • Taghiyar, Mohammad Jafar;
    • Maecker, Holden T.;
    • McCoy, J. Philip;
    • Ruttenberg, Alan;
    • Scheuermann, Richard H.;
    • Brinkman, Ryan R.
    Publication type:
    Article
    4

    flowCL: ontology-based cell population labelling in flow cytometry.

    Published in:
    2015
    By:
    • Courtot, Mélanie;
    • Meskas, Justin;
    • Diehl, Alexander D.;
    • Droumeva, Radina;
    • Gottardo, Raphael;
    • Jalali, Adrin;
    • Taghiyar, Mohammad Jafar;
    • Maecker, Holden T.;
    • McCoy, J. Philip;
    • Ruttenberg, Alan;
    • Scheuermann, Richard H.;
    • Brinkman, Ryan R.
    Publication type:
    Product Review
    5
    6
    7
    8
    9

    Improving the Quality and Reproducibility of Flow Cytometry in the Lung: An Official American Thoracic Society Workshop Report.

    Published in:
    American Journal of Respiratory Cell & Molecular Biology, 2019, v. 61, n. 2, p. 150, doi. 10.1165/rcmb.2019-0191ST
    By:
    • Tighe, Robert M.;
    • Redente, Elizabeth F.;
    • Yen-Rei Yu;
    • Herold, Susanne;
    • Sperling, Anne I.;
    • Curtis, Jeffrey L.;
    • Duggan, Ryan;
    • Swaminathan, Suchitra;
    • Hideki Nakano;
    • Zacharias, William J.;
    • Janssen, William J.;
    • Freeman, Christine M.;
    • Brinkman, Ryan R.;
    • Singer, Benjamin D.;
    • Jakubzick, Claudia V.;
    • Misharin, Alexander V.
    Publication type:
    Article
    10
    11
    12
    13

    Guidelines for the use of flow cytometry and cell sorting in immunological studies.

    Published in:
    European Journal of Immunology, 2017, v. 47, n. 10, p. 1584, doi. 10.1002/eji.201646632
    By:
    • Cossarizza, Andrea;
    • Chang, Hyun‐Dong;
    • Radbruch, Andreas;
    • Akdis, Mübeccel;
    • Andrä, Immanuel;
    • Annunziato, Francesco;
    • Bacher, Petra;
    • Barnaba, Vincenzo;
    • Battistini, Luca;
    • Bauer, Wolfgang M.;
    • Baumgart, Sabine;
    • Becher, Burkhard;
    • Beisker, Wolfgang;
    • Berek, Claudia;
    • Blanco, Alfonso;
    • Borsellino, Giovanna;
    • Boulais, Philip E.;
    • Brinkman, Ryan R.;
    • Büscher, Martin;
    • Busch, Dirk H.
    Publication type:
    Article
    14

    Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34408-0
    By:
    • Wang, Xuehai;
    • Nissen, Michael;
    • Gracias, Deanne;
    • Kusakabe, Manabu;
    • Simkin, Guillermo;
    • Jiang, Aixiang;
    • Duns, Gerben;
    • Sarkozy, Clementine;
    • Hilton, Laura;
    • Chavez, Elizabeth A.;
    • Segat, Gabriela C.;
    • Wong, Rachel;
    • Kim, Jubin;
    • Aoki, Tomohiro;
    • Islam, Rashedul;
    • May, Christina;
    • Hung, Stacy;
    • Tyshchenko, Kate;
    • Brinkman, Ryan R.;
    • Hirst, Martin
    Publication type:
    Article
    15

    Modeling biomedical experimental processes with OBI.

    Published in:
    Journal of Biomedical Semantics, 2010, v. 1, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-1-S1-S7
    By:
    • Brinkman, Ryan R.;
    • Courtot, Mélanie;
    • Derom, Dirk;
    • Fostel, Jennifer M.;
    • Yongqun He;
    • Lord, Phillip;
    • Malone, James;
    • Parkinson, Helen;
    • Peters, Bjoern;
    • Rocca-Serra, Philippe;
    • Ruttenberg, Alan;
    • Sansone, Susanna-Assunta;
    • Soldatova, Larisa N.;
    • Stoeckert, Jr., Christian J.;
    • Turner, Jessica A.;
    • Jie Zheng
    Publication type:
    Article
    16

    Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

    Published in:
    Nature Biotechnology, 2008, v. 26, n. 8, p. 889, doi. 10.1038/nbt.1411
    By:
    • Taylor, Chris F;
    • Field, Dawn;
    • Sansone, Susanna-Assunta;
    • Aerts, Jan;
    • Apweiler, Rolf;
    • Ashburner, Michael;
    • Ball, Catherine A;
    • Binz, Pierre-Alain;
    • Bogue, Molly;
    • Booth, Tim;
    • Brazma, Alvis;
    • Brinkman, Ryan R;
    • Michael Clark, Adam;
    • Deutsch, Eric W;
    • Fiehn, Oliver;
    • Fostel, Jennifer;
    • Ghazal, Peter;
    • Gibson, Frank;
    • Gray, Tanya;
    • Grimes, Graeme
    Publication type:
    Article
    17

    GenePattern flow cytometry suite.

    Published in:
    Source Code for Biology & Medicine, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1751-0473-8-14
    By:
    • Spidlen, Josef;
    • Barsky, Aaron;
    • Breuer, Karin;
    • Carr, Peter;
    • Nazaire, Marc-Danie;
    • Hill, Barbara Allen;
    • Qian, Yu;
    • Liefeld, Ted;
    • Reich, Michael;
    • Mesirov, Jill P.;
    • Wilkinson, Peter;
    • Scheuermann, Richard H.;
    • Sekaly, Rafick-Pierre;
    • Brinkman, Ryan R.
    Publication type:
    Article
    18

    B Cells With High Side Scatter Parameter by Flow Cytometry Correlate With Inferior Survival in Diffuse Large B-Cell Lymphoma.

    Published in:
    American Journal of Clinical Pathology, 2012, v. 137, n. 5, p. 805, doi. 10.1309/AJCPGR8BG4JDVOWR
    By:
    • Bashashati, Ali;
    • Johnson, Nathalie A.;
    • Khodabakhshi, Alireza Hadj;
    • Whiteside, Matthew D.;
    • Zare, Habil;
    • Scott, David W.;
    • Lo, Kenneth;
    • Gottardo, Raphael;
    • Brinkman, Fiona S.L.;
    • Connors, Joseph M.;
    • Slack, Graham W.;
    • Gascoyne, Randy D.;
    • Weng, Andrew P.;
    • Brinkman, Ryan R.
    Publication type:
    Article
    19
    20
    21

    Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort.

    Published in:
    Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.578801
    By:
    • Shannon, Casey P.;
    • Blimkie, Travis M.;
    • Ben-Othman, Rym;
    • Gladish, Nicole;
    • Amenyogbe, Nelly;
    • Drissler, Sibyl;
    • Edgar, Rachel D.;
    • Chan, Queenie;
    • Krajden, Mel;
    • Foster, Leonard J.;
    • Kobor, Michael S.;
    • Mohn, William W.;
    • Brinkman, Ryan R.;
    • Le Cao, Kim-Anh;
    • Scheuermann, Richard H.;
    • Tebbutt, Scott J.;
    • Hancock, Robert E.W.;
    • Koff, Wayne C.;
    • Kollmann, Tobias R.;
    • Sadarangani, Manish
    Publication type:
    Article
    22

    Flow cytometry data standards.

    Published in:
    BMC Research Notes, 2011, v. 4, n. 1, p. 50, doi. 10.1186/1756-0500-4-50
    By:
    • Spidlen, Josef;
    • Shooshtari, Parisa;
    • Kollmann, Tobias R.;
    • Brinkman, Ryan R.
    Publication type:
    Article
    23

    OntoFox: web-based support for ontology reuse.

    Published in:
    BMC Research Notes, 2010, v. 3, p. 175, doi. 10.1186/1756-0500-3-175
    By:
    • Zuoshuang Xiang;
    • Courtot, Mélanie;
    • Brinkman, Ryan R.;
    • Ruttenberg, Alan;
    • Yongqun He
    Publication type:
    Article
    24
    25
    26
    27
    28
    29
    30
    31

    Single Cell Phenotypic Profiling of 27 DLBCL Cases Reveals Marked Intertumoral and Intratumoral Heterogeneity.

    Published in:
    Cytometry. Part A, 2020, v. 97, n. 6, p. 620, doi. 10.1002/cyto.a.23919
    By:
    • Nissen, Michael D.;
    • Kusakabe, Manabu;
    • Wang, Xuehai;
    • Simkin, Guillermo;
    • Gracias, Deanne;
    • Tyshchenko, Kateryna;
    • Hill, Ainsleigh;
    • Meskas, Justin;
    • Hung, Stacy;
    • Chavez, Elizabeth A.;
    • Ennishi, Daisuke;
    • Aoki, Tomohiro;
    • Sarkozy, Clementine;
    • Connors, Joseph M.;
    • Farinha, Pedro;
    • Slack, Graham W.;
    • Gascoyne, Randy D.;
    • Brinkman, Ryan R.;
    • Scott, David W.;
    • Steidl, Christian
    Publication type:
    Article
    32
    33

    Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops.

    Published in:
    Cytometry. Part A, 2019, v. 95, n. 6, p. 598, doi. 10.1002/cyto.a.23777
    By:
    • Czechowska, Kamila;
    • Lannigan, Joanne;
    • Wang, Lili;
    • Arcidiacono, Judith;
    • Ashhurst, Thomas M.;
    • Barnard, Ruth M.;
    • Bauer, Steven;
    • Bispo, Cláudia;
    • Bonilla, Diana L.;
    • Brinkman, Ryan R.;
    • Cabanski, Maciej;
    • Chang, Hyun‐Dong;
    • Chakrabarti, Lina;
    • Chojnowski, Grace;
    • Cotleur, Bunny;
    • Degheidy, Heba;
    • Dela Cruz, Gelo V.;
    • Eck, Steven;
    • Elliott, John;
    • Errington, Rachel
    Publication type:
    Article
    34
    35
    36

    T-Cell Phenotypes Predictive of Frailty and Mortality in Elderly Nursing Home Residents.

    Published in:
    Journal of the American Geriatrics Society, 2017, v. 65, n. 1, p. 153, doi. 10.1111/jgs.14507
    By:
    • Johnstone, Jennie;
    • Parsons, Robin;
    • Botelho, Fernando;
    • Millar, Jamie;
    • McNeil, Shelly;
    • Fulop, Tamas;
    • McElhaney, Janet E.;
    • Andrew, Melissa K.;
    • Walter, Stephen D.;
    • Devereaux, P.J.;
    • Malek, Mehrnoush;
    • Brinkman, Ryan R.;
    • Bramson, Jonathan;
    • Loeb, Mark
    Publication type:
    Article
    37
    38
    39
    40
    41
    42
    43
    44
    45
    46
    47
    48
    49
    50