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Lateral Gene Transfer and Metabolic Adaptation in the Human Parasite Trichomonas vaginalis.
- Published in:
- Molecular Biology & Evolution, 2000, v. 17, n. 11, p. 1769, doi. 10.1093/oxfordjournals.molbev.a026275
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- Publication type:
- Article
IslandPath: aiding detection of genomic islands in prokaryotes.
- Published in:
- Bioinformatics, 2003, v. 19, n. 3, p. 418, doi. 10.1093/bioinformatics/btg004
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- Publication type:
- Article
PhyloBLAST: facilitating phylogenetic analysis of BLAST results.
- Published in:
- Bioinformatics, 2001, v. 17, n. 4, p. 385, doi. 10.1093/bioinformatics/17.4.385
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- Publication type:
- Article
The OxyR-regulated phnW gene encoding 2-aminoethylphosphonate:pyruvate aminotransferase helps protect Pseudomonas aeruginosa from tert-butyl hydroperoxide.
- Published in:
- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189066
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- Publication type:
- Article
Curating the innate immunity interactome.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 117, doi. 10.1186/1752-0509-4-117
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- Publication type:
- Article
Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality.
- Published in:
- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01405
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- Publication type:
- Article
Similarities between bacterial GAD and human GAD65: Implications in gut mediated autoimmune type 1 diabetes.
- Published in:
- PLoS ONE, 2022, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0261103
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- Publication type:
- Article
Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0788-5
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- Publication type:
- Article
Methods for predicting bacterial protein subcellular localization.
- Published in:
- 2006
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- Publication type:
- Correction notice
Methods for predicting bacterial protein subcellular localization.
- Published in:
- Nature Reviews Microbiology, 2006, v. 4, n. 10, p. 741, doi. 10.1038/nrmicro1494
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- Publication type:
- Article
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration.
- Published in:
- NPJ Science of Food, 2018, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41538-018-0032-6
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- Publication type:
- Article
CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization.
- Published in:
- 2015
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- Publication type:
- Product Review
Identification of 526 Conserved Metazoan Genetic Innovations Exposes a New Role for Cofactor E-like in Neuronal Microtubule Homeostasis.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003804
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- Publication type:
- Article
Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System.
- Published in:
- PLoS Genetics, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pgen.1000875
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- Publication type:
- Article
Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands.
- Published in:
- PLoS Genetics, 2005, v. 1, n. 5, p. 540, doi. 10.1371/journal.pgen.0010062
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- Publication type:
- Article
Microbial genomic island discovery, visualization and analysis.
- Published in:
- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1685, doi. 10.1093/bib/bby042
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- Publication type:
- Article
Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance.
- Published in:
- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01068
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- Publication type:
- Article
Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress.
- Published in:
- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00369
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- Publication type:
- Article
Evaluation of genomic island predictors using a comparative genomics approach.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-329
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- Publication type:
- Article
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.
- Published in:
- Bioinformatics, 2020, v. 36, n. 10, p. 3043, doi. 10.1093/bioinformatics/btaa136
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- Publication type:
- Article
Improved genomic island predictions with IslandPath-DIMOB.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2161, doi. 10.1093/bioinformatics/bty095
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- Publication type:
- Article
The Association of Virulence Factors with Genomic Islands.
- Published in:
- PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0008094
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- Publication type:
- Article
GlobeCorr: interactive globe-based visualization for correlation datasets.
- Published in:
- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbac099
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- Publication type:
- Article
A comprehensive method for ampliconbased and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples.
- Published in:
- Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0166-1
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- Publication type:
- Article
Addressing Privacy Concerns in Sharing Viral Sequences and Minimum Contextual Data in a Public Repository During the COVID-19 Pandemic.
- Published in:
- Frontiers in Genetics, 2022, p. 1, doi. 10.3389/fgene.2021.716541
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- Publication type:
- Article
Effective Adjunctive Therapy by an Innate Defense Regulatory Peptide in a Preclinical Model of Severe Malaria.
- Published in:
- Science Translational Medicine, 2012, v. 4, n. 135, p. 1, doi. 10.1126/scitranslmed.3003515
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- Publication type:
- Article
PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
- Published in:
- 2011
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- Publication type:
- Letter to the Editor
High-throughput detection of RNA processing in bacteria.
- Published in:
- BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4538-8
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- Publication type:
- Article
From Prescription Drugs to Natural Health Products: Medication Use in Canadian Infants.
- Published in:
- Children, 2022, v. 9, n. 10, p. 1475, doi. 10.3390/children9101475
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- Publication type:
- Article
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.
- Published in:
- Nucleic Acids Research, 2016, v. 44, p. D646, doi. 10.1093/nar/gkv1227
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- Publication type:
- Article
PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D663, doi. 10.1093/nar/gkv1271
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- Publication type:
- Article
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W104, doi. 10.1093/nar/gkv401
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- Publication type:
- Article
IslandViewer update: improved genomic island discovery and visualization.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. W129, doi. 10.1093/nar/gkt394
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- Publication type:
- Article
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D366, doi. 10.1093/nar/gks1241
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- Publication type:
- Article
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D1228, doi. 10.1093/nar/gks1147
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- Publication type:
- Article
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D596, doi. 10.1093/nar/gkq869
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- Publication type:
- Article
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.
- Published in:
- Bioinformatics, 2015, v. 31, n. 20, p. 3348, doi. 10.1093/bioinformatics/btv376
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- Publication type:
- Article
MicrobeDB: a locally maintainable database of microbial genomic sequences.
- Published in:
- Bioinformatics, 2012, v. 28, n. 14, p. 1947, doi. 10.1093/bioinformatics/bts273
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- Publication type:
- Article
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
- Published in:
- Bioinformatics, 2010, v. 26, n. 13, p. 1608, doi. 10.1093/bioinformatics/btq249
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- Publication type:
- Article
IslandViewer: an integrated interface for computational identification and visualization of genomic islands.
- Published in:
- Bioinformatics, 2009, v. 25, n. 5, p. 664
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- Publication type:
- Article
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.
- Published in:
- Bioinformatics, 2008, v. 24, n. 23, p. 2803, doi. 10.1093/bioinformatics/btn524
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- Publication type:
- Article
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D483, doi. 10.1093/nar/gkn861
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- Publication type:
- Article
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d338
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- Publication type:
- Article
PSORTdb: a protein subcellular localization database for bacteria.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d164
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- Publication type:
- Article
ArrayPipe: a flexible processing pipeline for microarray data.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w457, doi. 10.1093/nar/gkh446
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- Publication type:
- Article
ProbeLynx: a tool for updating the association of microarray probes to genes.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w471, doi. 10.1093/nar/gkh452
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- Publication type:
- Article
Detecting genomic islands using bioinformatics approaches.
- Published in:
- Nature Reviews Microbiology, 2010, v. 8, n. 5, p. 373, doi. 10.1038/nrmicro2350
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- Publication type:
- Article
The proportional lack of archaeal pathogens: Do viruses/phages hold the key?
- Published in:
- BioEssays, 2011, v. 33, n. 4, p. 248, doi. 10.1002/bies.201000091
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- Publication type:
- Article
The human transcriptome during nontyphoid Salmonella and HIV coinfection reveals attenuated NFkappaB-mediated inflammation and persistent cell cycle disruption.
- Published in:
- 2011
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- Publication type:
- journal article
The Human Transcriptome During Nontyphoid Salmonella and HIV Coinfection Reveals Attenuated NFkB-Mediated Inflammation and Persistent Cell Cycle Disruption.
- Published in:
- Journal of Infectious Diseases, 2011, v. 204, n. 8, p. 1237, doi. 10.1093/infdis/jir512
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- Publication type:
- Article