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Characteristics and genomic epidemiology of colistin-resistant Enterobacterales from farmers, swine, and hospitalized patients in Thailand, 2014–2017.
Published in:
BMC Infectious Diseases, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12879-023-08539-8
By:
- Boonyasiri, Adhiratha;
- Brinkac, Lauren M.;
- Jauneikaite, Elita;
- White, Richard C.;
- Greco, Chris;
- Seenama, Chakkraphong;
- Tangkoskul, Teerawit;
- Nguyen, Kevin;
- Fouts, Derrick E.;
- Thamlikitkul, Visanu
Publication type:
Article
Author Correction: Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes.
Published in:
2022
By:
- Clarke, Thomas;
- Brinkac, Lauren;
- Greco, Chris;
- Alleyne, Angela T.;
- Carrasco, Patricio;
- Inostroza, Carolina;
- Tau, Tiiseto;
- Wisitrasameewong, Wichaya;
- Torralba, Manolito G.;
- Nelson, Karen;
- Singh, Harinder
Publication type:
Correction Notice
Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21779-z
By:
- Clarke, Thomas;
- Brinkac, Lauren;
- Greco, Chris;
- Alleyne, Angela T.;
- Carrasco, Patricio;
- Inostroza, Carolina;
- Tau, Tiiseto;
- Wisitrasameewong, Wichaya;
- Torralba, Manolito G.;
- Nelson, Karen;
- Singh, Harinder
Publication type:
Article
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 22, p. e172, doi. 10.1093/nar/gks757
By:
- Fouts, Derrick E.;
- Brinkac, Lauren;
- Beck, Erin;
- Inman, Jason;
- Sutton, Granger
Publication type:
Article
CharProtDB: a database of experimentally characterized protein annotations.
Published in:
Nucleic Acids Research, 2012, p. D237, doi. 10.1093/nar/gkr1133
By:
- Madupu, Ramana;
- Richter, Alexander;
- Dodson, Robert J.;
- Brinkac, Lauren;
- Harkins, Derek;
- Durkin, Scott;
- Shrivastava, Susmita;
- Sutton, Granger;
- Haft, Daniel
Publication type:
Article
The Protein Naming Utility: a rules database for protein nomenclature.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D336, doi. 10.1093/nar/gkp958
By:
- Goll, Johannes;
- Montgomery, Robert;
- Brinkac, Lauren M.;
- Schobel, Seth;
- Harkins, Derek M.;
- Sebastian, Yinong;
- Shrivastava, Susmita;
- Durkin, Scott;
- Sutton, Granger
Publication type:
Article
Pathema: a clade-specific bioinformatics resource center for pathogen research.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D408, doi. 10.1093/nar/gkp850
By:
- Brinkac, Lauren M.;
- Davidsen, Tanja;
- Beck, Erin;
- Ganapathy, Anuradha;
- Caler, Elisabet;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Harkins, Derek M.;
- Lorenzi, Hernan;
- Madupu, Ramana;
- Sebastian, Yinong;
- Shrivastava, Susmita;
- Thiagarajan, Mathangi;
- Orvis, Joshua;
- Sundaram, Jaideep P.;
- Crabtree, Jonathon;
- Galens, Kevin;
- Yongmei Zhao;
- Inman, Jason M.;
- Montgomery, Robert
Publication type:
Article
Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Published in:
2006
By:
- Paulsen, Ian T.;
- Press, Caroline M.;
- Ravel, Jacques;
- Kobayashi, Donald Y.;
- Myers, Garry S. A.;
- Mavrodi, Dmitri V.;
- DeBoy, Robert T.;
- Seshadri, Rekha;
- Ren, Qinghu;
- Madupu, Ramana;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Sullivan, Stephen A.;
- Rosovitz, Mary J.;
- Gwinn, Michelle L.;
- Zhou, Liwei;
- Schneider, Davd J.;
- Cartinhour, Samuel W.
Publication type:
Correction Notice
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Published in:
Nature Biotechnology, 2005, v. 23, n. 7, p. 873, doi. 10.1038/nbt1110
By:
- Paulsen, Ian T.;
- Press, Caroline M.;
- Ravel, Jacques;
- Kobayashi, Donald Y.;
- Myers, Garry S. A.;
- Mavrodi, Dmitri V.;
- DeBoy, Robert T.;
- Seshadri, Rekha;
- Ren, Qinghu;
- Madupu, Ramana;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Sullivan, Stephen A.;
- Rosovitz, Mary J.;
- Gwinn, Michelle L.;
- Zhou, Liwei;
- Schneider, Davd J.;
- Cartinhour, Samuel W.
Publication type:
Article
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.
Published in:
Nature Biotechnology, 2004, v. 22, n. 5, p. 554, doi. 10.1038/nbt959
By:
- Heidelberg, John F.;
- Seshadri, Rekha;
- Haveman, Shelley A.;
- Hemme, Christopher L.;
- Paulsen, Ian T.;
- Kolonay, James F.;
- Eisen, Jonathan A.;
- Ward, Naomi;
- Methe, Barbara;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Deboy, Robert T.;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Madupu, Ramana;
- Nelson, William C.;
- Sullivan, Steven A.;
- Fouts, Derrick;
- Haft, Daniel H.;
- Selengut, Jeremy
Publication type:
Article
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis.
Published in:
Nature Biotechnology, 2002, v. 20, n. 11, p. 1118, doi. 10.1038/nbt749
By:
- Heidelberg, John F.;
- Paulsen, Ian T.;
- Nelson, Karen E.;
- Gaidos, Eric J.;
- Nelson, William C.;
- Read, Timothy D.;
- Eisen, Jonathan A.;
- Seshadri, Rekha;
- Ward, Naomi;
- Methe, Barbara;
- Clayton, Rebecca A.;
- Meyer, Terry;
- Tsapin, Alexandre;
- Scott, James;
- Beanan, Maureen;
- Brinkac, Lauren;
- Daugherty, Sean;
- DeBoy, Robert T.;
- Dodson, Robert J.;
- Durkin, A. Scott
Publication type:
Article
Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters.
Published in:
Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-11
By:
- Chen, Huan;
- Brinkac, Lauren M.;
- Mishra, Pamela;
- Li, Nan;
- Lymperopoulou, Despoina S.;
- Dickerson, Tamar L.;
- Gordon-Bradley, Nadine;
- Williams, Henry N.;
- Badger, Jonathan H.
Publication type:
Article
Standardized Metadata for Human Pathogen/Vector Genomic Sequences.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099979
By:
- Dugan, Vivien G.;
- Emrich, Scott J.;
- Giraldo-Calderón, Gloria I.;
- Harb, Omar S.;
- Newman, Ruchi M.;
- Pickett, Brett E.;
- Schriml, Lynn M.;
- Stockwell, Timothy B.;
- Stoeckert Jr, Christian J.;
- Sullivan, Dan E.;
- Singh, Indresh;
- Ward, Doyle V.;
- Yao, Alison;
- Zheng, Jie;
- Barrett, Tanya;
- Birren, Bruce;
- Brinkac, Lauren;
- Bruno, Vincent M.;
- Caler, Elizabet;
- Chapman, Sinéad
Publication type:
Article
Genome Degradation in Brucella ovis Corresponds with Narrowing of Its Host Range and Tissue Tropism.
Published in:
PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005519
By:
- Tsolis, Renee M.;
- Seshadri, Rekha;
- Santos, Renato L.;
- Sangari, Felix J.;
- Lobo, Juan M. García;
- de Jong, Maarten F.;
- Qinghu Ren;
- Myers, Garry;
- Brinkac, Lauren M.;
- Nelson, William C.;
- DeBoy, Robert T.;
- Angiuoli, Samuel;
- Khouri, Hoda;
- Dimitrov, George;
- Robinson, Jeffrey R.;
- Mulligan, Stephanie;
- Walker, Richard L.;
- Elzer, Philip E.;
- Hassan, Karl A.;
- Paulsen, Ian T.
Publication type:
Article
Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3112-5
By:
- Linz, Bodo;
- Ivanov, Yury V.;
- Preston, Andrew;
- Brinkac, Lauren;
- Parkhill, Julian;
- Kim, Maria;
- Harris, Simon R.;
- Goodfield, Laura L.;
- Fry, Norman K.;
- Gorringe, Andrew R.;
- Nicholson, Tracy L.;
- Register, Karen B.;
- Losada, Liliana;
- Harvill, Eric T.
Publication type:
Article
Meeting report: a workshop on Best Practices in Genome Annotation.
Published in:
Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq001
By:
- Madupu, Ramana;
- Brinkac, Lauren M.;
- Harrow, Jennifer;
- Wilming, Laurens G.;
- Böhme, Ulrike;
- Lamesch, Philippe;
- Hannick, Linda I.
Publication type:
Article
Genomic and clinical characterisation of multidrug-resistant carbapenemase-producing ST231 and ST16 Klebsiella pneumoniae isolates colonising patients at Siriraj hospital, Bangkok, Thailand from 2015 to 2017.
Published in:
2021
By:
- Boonyasiri, Adhiratha;
- Jauneikaite, Elita;
- Brinkac, Lauren M.;
- Greco, Chris;
- Lerdlamyong, Kanokorn;
- Tangkoskul, Teerawit;
- Nguyen, Kevin;
- Thamlikitkul, Visanu;
- Fouts, Derrick E.
Publication type:
journal article
The Threat of Antimicrobial Resistance on the Human Microbiome.
Published in:
Microbial Ecology, 2017, v. 74, n. 4, p. 1001, doi. 10.1007/s00248-017-0985-z
By:
- Brinkac, Lauren;
- Nelson, Karen;
- Voorhies, Alexander;
- Gomez, Andres
Publication type:
Article
MPrESS: An R-Package for Accurately Predicting Power for Comparisons of 16S rRNA Microbiome Taxa Distributions including Simulation by Dirichlet Mixture Modeling.
Published in:
Microorganisms, 2023, v. 11, n. 5, p. 1166, doi. 10.3390/microorganisms11051166
By:
- Clarke, Thomas H.;
- Greco, Chris;
- Brinkac, Lauren;
- Nelson, Karen E.;
- Singh, Harinder
Publication type:
Article
Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46964-5
By:
- Tapiainen, Terhi;
- Koivusaari, Pirjo;
- Brinkac, Lauren;
- Lorenzi, Hernan A.;
- Salo, Jarmo;
- Renko, Marjo;
- Pruikkonen, Hannele;
- Pokka, Tytti;
- Li, Weizhong;
- Nelson, Karen;
- Pirttilä, Anna Maria;
- Tejesvi, Mysore V.
Publication type:
Article
Whole genome comparisons of serotype 4b and 1/2a strains of the food‐borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 8, p. 2386, doi. 10.1093/nar/gkh562
By:
- Nelson, Karen E.;
- Fouts, Derrick E.;
- Mongodin, Emmanuel F.;
- Ravel, Jacques;
- DeBoy, Robert T.;
- Kolonay, James F.;
- Rasko, David A.;
- Angiuoli, Samuel V.;
- Gill, Steven R.;
- Paulsen, Ian T.;
- Peterson, Jeremy;
- White, Owen;
- Nelson, William C.;
- Nierman, William;
- Beanan, Maureen J.;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Madupu, Ramana
Publication type:
Article
Serum susceptibility of Escherichia coli and its association with patient clinical outcomes.
Published in:
PLoS ONE, 2024, v. 19, n. 7, p. 1, doi. 10.1371/journal.pone.0307968
By:
- Poteete, Orianna;
- Cox, Phillip;
- Ruffin, Felicia;
- Sutton, Granger;
- Brinkac, Lauren;
- Clarke, Thomas H.;
- Fouts, Derrick E.;
- Fowler Jr., Vance G.;
- Thaden, Joshua T.
Publication type:
Article
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.
Published in:
Nature, 2004, v. 432, n. 7019, p. 910, doi. 10.1038/nature03170
By:
- Moran, Mary Ann;
- Buchan, Alison;
- González, José M.;
- Heidelberg, John F.;
- Whitman, William B.;
- Kiene, Ronald P.;
- Henriksen, James R.;
- King, Gary M.;
- Belas, Robert;
- Fuqua, Clay;
- Brinkac, Lauren;
- Lewis, Matt;
- Johri, Shivani;
- Weaver, Bruce;
- Pai, Grace;
- Eisen, Jonathan A.;
- Rahe, Elisha;
- Sheldon, Wade M.;
- Ye, Wenying;
- Miller, Todd R.
Publication type:
Article
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.
Published in:
Nature, 2003, v. 423, n. 6935, p. 81, doi. 10.1038/nature01586
By:
- Read, Timothy D.;
- Peterson, Scott N.;
- Tourasse, Nicolas;
- Baillie, Les W.;
- Paulsen, Ian T.;
- Nelson, Karen E.;
- Tettelin, Herve;
- Fouts, Derrick E.;
- Eisen, Jonathan A.;
- Gill, Steven R.;
- Holtzapple, Erik K.;
- Okstad, Ole Andreas;
- Helgason, Erlendur;
- Rilstone, Jennifer;
- Wu, Martin;
- Kolonay, James F.;
- Beanan, Maureen J.;
- Dodson, Robert J.;
- Brinkac, Lauren M.
Publication type:
Article
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030015
By:
- Fouts, Derrick E;
- Mongodin, Emmanuel F;
- Mandrell, Robert E;
- Miller, William G;
- Rasko, David A;
- Ravel, Jacques;
- Brinkac, Lauren M;
- DeBoy, Robert T;
- Parker, Craig T;
- Daugherty, Sean C;
- Dodson, Robert J;
- Durkin, A. Scott;
- Madupu, Ramana;
- Sullivan, Steven A;
- Shetty, Jyoti U;
- Ayodeji, Mobolanle A;
- Shvartsbeyn, Alla;
- Schatz, Michael C;
- Badger, Jonathan H;
- Fraser, Claire M
Publication type:
Article
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 72, doi. 10.1371/journal.pbio.0030015
By:
- Foutsi, Derrick E.;
- Mongodin, Emmanuel F.;
- Mandrell, Robert E.;
- Miller, William G.;
- Rasko, David A.;
- Ravel, Jacques;
- Brinkac, Lauren M.;
- Deboy, Robert T.;
- Parker, Craig T.;
- Daugherty, Sean C.;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Ramana Madupu;
- Sullivan, Steven A.;
- Shetty, Jyoti U.;
- Ayodeji, Mobolanle A.;
- Shvartsbeyn, Alla;
- Schatz, Michael C.;
- Badger, Jonathan H.;
- Fraser, Claire M.
Publication type:
Article
Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements.
Published in:
PLoS Biology, 2004, v. 2, n. 3, p. 1, doi. 10.1371/journal.pbio.0020069
By:
- Wu, Martin;
- Sun, Ling V;
- Vamathevan, Jessica;
- Riegler, Markus;
- Deboy, Robert;
- Brownlie, Jeremy C;
- McGraw, Elizabeth A;
- Martin, William;
- Esser, Christian;
- Ahmadinejad, Nahal;
- Wiegand, Christian;
- Madupu, Ramana;
- Beanan, Maureen J;
- Brinkac, Lauren M;
- Daugherty, Sean C;
- Durkin, A. Scott;
- Kolonay, James F;
- Nelson, William C;
- Mohamoud, Yasmin;
- Lee, Perris
Publication type:
Article
Phylogenomics of the Reproductive Parasite Wolbachia pipientis w Mel:A Streamlined Genome Overrun by Mobile Genetic Elements.
Published in:
PLoS Biology, 2004, v. 2, n. 3, p. 327
By:
- Sun, Ling V.;
- Deboy, Robert;
- Brownlie, Jeremy C.;
- McGraw, Elizabeth A.;
- Martin, William;
- Esser, Christian;
- Ahmadinejad, Nahal;
- Madupu, Ramana;
- Beanan, Maureen J.;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Durkin, A. Scott;
- Kolonay, James F.;
- Nelson, William C.;
- Mohamoud, Yasmin;
- Lee, Perris Lee;
- Berry, Kristi;
- Utterback, Teresa;
- Nierman, William C.;
- Paulsen, Ian T.
Publication type:
Article
Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing.
Published in:
Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.644861
By:
- Singh, Harinder;
- Clarke, Thomas;
- Brinkac, Lauren;
- Greco, Chris;
- Nelson, Karen E.
Publication type:
Article
Pathogenomic Inference of Virulence-Associated Genes in Leptospira interrogans.
Published in:
PLoS Neglected Tropical Diseases, 2013, v. 7, n. 10, p. 1, doi. 10.1371/journal.pntd.0002468
By:
- Lehmann, Jason S.;
- Fouts, Derrick E.;
- Haft, Daniel H.;
- Cannella, Anthony P.;
- Ricaldi, Jessica N.;
- Brinkac, Lauren;
- Harkins, Derek;
- Durkin, Scott;
- Sanka, Ravi;
- Sutton, Granger;
- Moreno, Angelo;
- Vinetz, Joseph M.;
- Matthias, Michael A.
Publication type:
Article
Pathogenomic Inference of Virulence-Associated Genes in <i>Leptospira interrogans</i>.
Published in:
PLoS Neglected Tropical Diseases, 2013, v. 7, n. 10, p. 1, doi. 10.1371/journal.pntd.0002468
By:
- Lehmann, Jason S.;
- Fouts, Derrick E.;
- Haft, Daniel H.;
- Cannella, Anthony P.;
- Ricaldi, Jessica N.;
- Brinkac, Lauren;
- Harkins, Derek;
- Durkin, Scott;
- Sanka, Ravi;
- Sutton, Granger;
- Moreno, Angelo;
- Vinetz, Joseph M.;
- Matthias, Michael A.
Publication type:
Article
New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information.
Published in:
PLoS Neglected Tropical Diseases, 2010, v. 4, n. 6, p. 1, doi. 10.1371/journal.pntd.0000716
By:
- Lorenzi, Hernan A.;
- Puiu, Daniela;
- Miller, Jason R.;
- Brinkac, Lauren M.;
- Amedeo, Paolo;
- Hall, Neil;
- Caler, Elisabet V.
Publication type:
Article
New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information.
Published in:
PLoS Neglected Tropical Diseases, 2010, v. 4, n. 6, p. 1, doi. 10.1371/journal.pntd.0000716
By:
- Lorenzi, Hernan A.;
- Puiu, Daniela;
- Miller, Jason R.;
- Brinkac, Lauren M.;
- Amedeo, Paolo;
- Hall, Neil;
- Caler, Elisabet V.
Publication type:
Article
PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2250-y
By:
- Clarke, Thomas H.;
- Brinkac, Lauren M.;
- Inman, Jason M.;
- Sutton, Granger;
- Fouts, Derrick E.
Publication type:
Article
Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901.
Published in:
2006
By:
- Wu, Martin;
- Ren, Qinghu;
- Durkin, A. Scott;
- Daugherty, Sean C.;
- Brinkac, Lauren M.;
- Dodson, Robert J.;
- Madupu, Ramana;
- Sullivan, Steven A.;
- Kolonay, James F.;
- Haft, Daniel H.;
- Nelson, William C.;
- Tallon, Luke J.;
- Jones, Kristine M.;
- Ulrich, Luke E.;
- Gonzalez, Juan M.;
- Zhulin, Igor B.;
- Robb, Frank T.;
- Eisen, Jonathan A.
Publication type:
Correction Notice
Comparative Genomics of Emerging Human Ehrlichiosis Agents.
Published in:
PLoS Genetics, 2006, v. 2, n. 2, p. 0208, doi. 10.1371/journal.pgen.0020021
By:
- Hotopp, Julie C. Dunning;
- Mingqun Lin;
- Madupu, Ramana;
- Crabtree, Jonathan;
- Angiuoli, Samuel V.;
- Eisen, Jonathan;
- Seshadri, Rekha;
- Qinghu Ren;
- Wu, Martin;
- Utterback, Teresa R.;
- Smith, Shannon;
- Lewis, Matthew;
- Khouri, Hoda;
- Zhang, Chunbin;
- Hua Niu;
- Quan Lin;
- Ohashi, Norio;
- Ning Zhi;
- Nelson, William;
- Brinkac, Lauren M.
Publication type:
Article
Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901.
Published in:
PLoS Genetics, 2005, v. 1, n. 5, p. 563, doi. 10.1371/journal.pgen.0010065
By:
- Wu, Martin;
- Ren, Qinghu;
- Durkin, A. Scott;
- Daugherty, Sean C.;
- Brinkac, Lauren M.;
- Dodson, Robert J.;
- Madupu, Ramana;
- Sullivan, Steven A.;
- Kolonay, James F.;
- Nelson, William C.;
- Tallon, Luke J.;
- Jones, Kristine M.;
- Ulrich, Luke E.;
- Gonzalez, Juan M.;
- Zhulin, Igor B.;
- Robb, Frank T.;
- Eisen, Jonathan A.;
- Richardson, Paul M.
Publication type:
Article
Vertical Transmission of Gut Microbiome and Antimicrobial Resistance Genes in Infants Exposed to Antibiotics at Birth.
Published in:
Journal of Infectious Diseases, 2021, v. 224, n. 7, p. 1236, doi. 10.1093/infdis/jiaa155
By:
- Li, Weizhong;
- Tapiainen, Terhi;
- Brinkac, Lauren;
- Lorenzi, Hernan A;
- Moncera, Kelvin;
- Tejesvi, Mysore V;
- Salo, Jarmo;
- Nelson, Karen E
Publication type:
Article
Vertical Transmission of Gut Microbiome and Antimicrobial Resistance Genes in Infants Exposed to Antibiotics at Birth.
Published in:
2020
By:
- Li, Weizhong;
- Tapiainen, Terhi;
- Brinkac, Lauren;
- Lorenzi, Hernan A;
- Moncera, Kelvin;
- Tejesvi, Mysore;
- Salo, Jarmo;
- Nelson, Karen E;
- Tejesvi, Mysore V
Publication type:
journal article
AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates.
Published in:
2020
By:
- Chan, Agnes P;
- Choi, Yongwook;
- Clarke, Thomas H;
- Brinkac, Lauren M;
- White, Richard C;
- Jacobs, Michael R;
- Bonomo, Robert A;
- Adams, Mark D;
- Fouts, Derrick E
Publication type:
journal article
Large-scale comparative analysis of microbial pan-genomes using PanOCT.
Published in:
Bioinformatics, 2019, v. 35, n. 6, p. 1049, doi. 10.1093/bioinformatics/bty744
By:
- Inman, Jason M;
- Sutton, Granger G;
- Beck, Erin;
- Brinkac, Lauren M;
- Clarke, Thomas H;
- Fouts, Derrick E
Publication type:
Article
GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models.
Published in:
Bioinformatics, 2018, v. 34, n. 17, p. 3032, doi. 10.1093/bioinformatics/bty300
By:
- Clarke, Thomas H;
- Brinkac, Lauren M;
- Sutton, Granger;
- Fouts, Derrick E
Publication type:
Article
LOCUST: a custom sequence locus typer for classifying microbial isolates.
Published in:
2017
By:
- Brinkac, Lauren M.;
- Beck, Erin;
- Inman, Jason;
- Venepally, Pratap;
- Fouts, Derrick E.;
- Sutton, Granger
Publication type:
Product Review
Escherichia coli O-Antigen Gene Clusters of Serogroups O62, O68, O131, O140, O142, and O163: DNA Sequences and Similarity between O62 and O68, and PCR-Based Serogrouping.
Published in:
Biosensors (2079-6374), 2015, v. 5, n. 1, p. 51, doi. 10.3390/bios5010051
By:
- Yanhong Liu;
- Xianghe Yan;
- DebRoy, Chitrita;
- Fratamico, Pina M.;
- Needleman, David S.;
- Li, Robert W.;
- Wei Wang;
- Losada, Liliana;
- Brinkac, Lauren;
- Radune, Diana;
- Toro, Magaly;
- Hegde, Narasimha;
- Meng, Jianghong
Publication type:
Article
Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements.
Published in:
BMC Microbiology, 2010, v. 10, p. 202, doi. 10.1186/1471-2180-10-202
By:
- Ronning, Catherine M.;
- Losada, Liliana;
- Brinkac, Lauren;
- Inman, Jason;
- Ulrich, Ricky L.;
- Schell, Mark;
- Nierman, William C.;
- DeShazer, David
Publication type:
Article
SARS-CoV-2 Delta variant isolates from vaccinated individuals.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08652-z
By:
- Brinkac, Lauren;
- Diepold, Sheila;
- Mitchell, Shane;
- Sarnese, Stephanie;
- Kolakowski, Lee F.;
- Nelson, William M.;
- Jennings, Katharine
Publication type:
Article

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