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Variant Impact Predictor database (VIPdb), version 2: trends from three decades of genetic variant impact predictors.
- Published in:
- Human Genomics, 2024, v. 18, n. 1, p. 1, doi. 10.1186/s40246-024-00663-z
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- Article
The RNA Ontology Consortium: An open invitation to the RNA community.
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- Journal of Nuclear Medicine Technology, 2006, v. 34, n. 1, p. 1
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- Article
Investigation of the causal etiology in a patient with T-B+NK+ immunodeficiency.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.928252
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- Article
SCOPe: classification of large macromolecular structures in the structural classification of proteins—extended database.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D475, doi. 10.1093/nar/gky1134
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- Article
SIFTER search: a web server for accurate phylogeny-based protein function prediction.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W141, doi. 10.1093/nar/gkv461
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- Article
SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D304, doi. 10.1093/nar/gkt1240
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- Article
An SF1 affinity model to identify branch point sequences in human introns.
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- Nucleic Acids Research, 2011, v. 39, n. 6, p. 2344, doi. 10.1093/nar/gkq1046
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- Article
Biases in Illumina transcriptome sequencing caused by random hexamer priming.
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- Nucleic Acids Research, 2010, v. 38, n. 12, p. e131, doi. 10.1093/nar/gkq224
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- Article
Data growth and its impact on the SCOP database: new developments.
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- Nucleic Acids Research, 2008, v. 36, p. D419
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- Article
Newborn screening for neurodevelopmental diseases: Are we there yet?
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- American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 2022, v. 190, n. 2, p. 222, doi. 10.1002/ajmg.c.31988
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- Article
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 7, p. 1440, doi. 10.1038/ismej.2011.208
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- Article
ClinVar and HGMD genomic variant classification accuracy has improved over time, as measured by implied disease burden.
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- Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01199-y
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- Article
The value of protein structure classification information-Surveying the scientific literature.
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- Proteins, 2015, v. 83, n. 11, p. 2025, doi. 10.1002/prot.24915
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- Article
Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: Recurrence of tyrosine aminotransferase activity in the Iα subfamily.
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- Proteins, 2013, v. 81, n. 9, p. 1593, doi. 10.1002/prot.24318
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- Article
Target selection and deselection at the Berkeley Structural Genomics Center.
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- Proteins, 2006, v. 62, n. 2, p. 356, doi. 10.1002/prot.20674
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- Article
A generalized affine gap model significantly improves protein sequence alignment accuracy.
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- Proteins, 2005, v. 58, n. 2, p. 329, doi. 10.1002/prot.20299
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- Article
Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches.
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- Proteins, 2005, v. 58, n. 1, p. 166, doi. 10.1002/prot.20298
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- Article
Measurements of protein sequence-structure correlations.
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- Proteins, 2004, v. 57, n. 4, p. 804, doi. 10.1002/prot.20262
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- Article
A TOUR OF STRUCTURAL GENOMICS.
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- Nature Reviews Genetics, 2001, v. 2, n. 10, p. 801, doi. 10.1038/35093574
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- Article
Application of full-genome analysis to diagnose rare monogenic disorders.
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- NPJ Genomic Medicine, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41525-021-00241-5
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- Article
Application of full-genome analysis to diagnose rare monogenic disorders.
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- NPJ Genomic Medicine, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41525-021-00241-5
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- Article
Publisher Correction: Application of full-genome analysis to diagnose rare monogenic disorders.
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- 2021
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- Correction Notice
Application of full-genome analysis to diagnose rare monogenic disorders.
- Published in:
- NPJ Genomic Medicine, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41525-021-00241-5
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- Article
FDA oversight of NSIGHT genomic research: the need for an integrated systems approach to regulation.
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- NPJ Genomic Medicine, 2019, v. 4, n. 1, p. 1, doi. 10.1038/s41525-019-0105-8
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- Article
Regulation of Splicing Factors by Alternative Splicing and NMD Is Conserved between Kingdoms Yet Evolutionarily Flexible.
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- Molecular Biology & Evolution, 2015, v. 32, n. 4, p. 1072, doi. 10.1093/molbev/msv002
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- Article
Common sense for our genomes.
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- 2007
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- Publication type:
- Editorial
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements.
- Published in:
- Nature, 2007, v. 446, n. 7138, p. 926, doi. 10.1038/nature05676
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- Article
MeRNA: a database of metal ion binding sites in RNA structures.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d131, doi. 10.1093/nar/gkj058
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- Article
Three‐dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U‐turns.
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- Nucleic Acids Research, 2004, v. 32, n. 8, p. 2342, doi. 10.1093/nar/gkh537
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- Article
The ASTRAL Compendium in 2004.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d189
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- Article
SCOP database in 2004: refinements integrate structure and sequence family data.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d226
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- Article
SCOR: Structural Classification of RNA, version 2.0.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d182
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- Article
SCOP database in 2002: refinements accommodate structural genomics.
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- Nucleic Acids Research, 2002, v. 30, n. 1, p. 264, doi. 10.1093/nar/30.1.264
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- Article
SCOR: a Structural Classification of RNA database.
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- Nucleic Acids Research, 2002, v. 30, n. 1, p. 392, doi. 10.1093/nar/30.1.392
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- Article
ASTRAL compendium enhancements.
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- Nucleic Acids Research, 2002, v. 30, n. 1, p. 260, doi. 10.1093/nar/30.1.260
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- Article
SCOP: a Structural Classification of Proteins database.
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- Nucleic Acids Research, 2000, v. 28, n. 1, p. 257, doi. 10.1093/nar/28.1.257
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- Article
The ASTRAL compendium for protein structure and sequence analysis.
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- Nucleic Acids Research, 2000, v. 28, n. 1, p. 254, doi. 10.1093/nar/28.1.254
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- Article
SCOP: a Structural Classification of Proteins database.
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- Nucleic Acids Research, 1999, v. 27, n. 1, p. 254, doi. 10.1093/nar/27.1.254
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- Article
The PRESAGE database for structural genomics.
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- Nucleic Acids Research, 1999, v. 27, n. 1, p. 251, doi. 10.1093/nar/27.1.251
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- Article
SCOP: a Structural Classification of Proteins database.
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- Nucleic Acids Research, 1997, v. 25, n. 1, p. 236, doi. 10.1093/nar/25.1.236
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- Article
Ten Years of PLoS<sup>‡</sup> Computational Biology: A Decade of Appreciation and Innovation.
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- 2015
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- Publication type:
- Editorial
Protein Molecular Function Prediction by Bayesian Phylogenomics.
- Published in:
- PLoS Computational Biology, 2005, v. 1, n. 5, p. 432, doi. 10.1371/journal.pcbi.0010045
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- Article
PLoS Computational Biology: A New Community Journal.
- Published in:
- 2005
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- Publication type:
- Editorial
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03113-6
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- Publication type:
- Article
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03113-6
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- Publication type:
- Article
A rust‐fungus Nudix hydrolase effector decaps mRNAin vitro and interferes with plant immune pathways.
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- New Phytologist, 2023, v. 239, n. 1, p. 222, doi. 10.1111/nph.18727
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- Article
Multiple breast cancer risk variants are associated with differential transcript isoform expression in tumors.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 25, p. 7421, doi. 10.1093/hmg/ddv432
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- Article
Be prepared for the big genome leak.
- Published in:
- Nature, 2013, v. 498, n. 7453, p. 139, doi. 10.1038/498139a
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- Article
ANDY: a general, fault-tolerant tool for database searching on computer clusters.
- Published in:
- Bioinformatics, 2006, v. 22, n. 5, p. 618, doi. 10.1093/bioinformatics/btk020
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- Article
Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap.
- Published in:
- Bioinformatics, 2005, v. 21, n. 20, p. 3824, doi. 10.1093/bioinformatics/bti627
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- Article