Works by Breitwieser, Florian P.

Results: 13

Metagenome analysis using the Kraken software suite.

Published in:

Nature Protocols, 2022, v. 17, n. 12, p. 2815, doi. 10.1038/s41596-022-00738-y

By:

Lu, Jennifer;
Rincon, Natalia;
Wood, Derrick E.;
Breitwieser, Florian P.;
Pockrandt, Christopher;
Langmead, Ben;
Salzberg, Steven L.;
Steinegger, Martin

Publication type:

Article

Initial characterization of the human central proteome.

Published in:

BMC Systems Biology, 2011, v. 5, n. 1, p. 17, doi. 10.1186/1752-0509-5-17

By:

Burkard, Thomas R.;
Planyavsky, Melanie;
Kaupe, Ines;
Breitwieser, Florian P.;
Bürckstümmer, Tilmann;
Bennett, Keiryn L.;
Superti-Furga, Giulio;
Colinge, Jacques

Publication type:

Article

A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1001001

By:

Burkard, Thomas R.;
Rix, Uwe;
Breitwieser, Florian P.;
Superti-Furga, Giulio;
Colinge, Jacques

Publication type:

Article

Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms.

Published in:

European Journal of Clinical Microbiology & Infectious Diseases, 2021, v. 40, n. 1, p. 95, doi. 10.1007/s10096-020-03996-4

By:

Yee, Rebecca;
Breitwieser, Florian P.;
Hao, Stephanie;
Opene, Belita N.A.;
Workman, Rachael E.;
Tamma, Pranita D.;
Dien-Bard, Jennifer;
Timp, Winston;
Simner, Patricia J.

Publication type:

Article

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187132

By:

Mainali, Kumar P.;
Bewick, Sharon;
Fagan, William F.;
Thielen, Peter;
Mehoke, Thomas;
Wolfe, Joshua;
Karig, David;
Breitwieser, Florian P.;
Paudel, Shishir;
Adhikari, Arjun;
Slud, Eric V.

Publication type:

Article

Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification.

Published in:

Bioinformatics, 2020, v. 36, n. 4, p. 1303, doi. 10.1093/bioinformatics/btz715

By:

Breitwieser, Florian P;
Salzberg, Steven L

Publication type:

Article

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs.

Published in:

Annals of Internal Medicine, 2017, v. 167, n. 1, p. 1, doi. 10.7326/M17-0085

By:

Kandathil, Abraham J.;
Breitwieser, Florian P.;
Sachithanandham, Jaiprasath;
Robinson, Matthew;
Mehta, Shruti H.;
Timp, Winston;
Salzberg, Steven L.;
Thomas, David L.;
Balagopal, Ashwin

Publication type:

Article

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs.

Published in:

2017

By:

Kandathil, Abraham J;
Breitwieser, Florian P;
Sachithanandham, Jaiprasath;
Robinson, Matthew;
Mehta, Shruti H;
Timp, Winston;
Salzberg, Steven L;
Thomas, David L;
Balagopal, Ashwin

Publication type:

journal article

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML.

Published in:

Nature Chemical Biology, 2012, v. 8, n. 11, p. 905, doi. 10.1038/nchembio.1085

By:

Winter, Georg E;
Rix, Uwe;
Carlson, Scott M;
Gleixner, Karoline V;
Grebien, Florian;
Gridling, Manuela;
Müller, André C;
Breitwieser, Florian P;
Bilban, Martin;
Colinge, Jacques;
Valent, Peter;
Bennett, Keiryn L;
White, Forest M;
Superti-Furga, Giulio

Publication type:

Article

Corrigendum: CD4<sup>+</sup> T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2.

Published in:

Nature Immunology, 2014, v. 15, n. 9, p. 894, doi. 10.1038/ni0914-894e

By:

Boucheron, Nicole;
Tschismarov, Roland;
Goeschl, Lisa;
A Moser, Mirjam;
Lagger, Sabine;
Sakaguchi, Shinya;
Winter, Mircea;
Lenz, Florian;
Vitko, Dijana;
Breitwieser, Florian P;
Müller, Lena;
Hassan, Hammad;
Bennett, Keiryn L;
Colinge, Jacques;
Schreiner, Wolfgang;
Egawa, Takeshi;
Taniuchi, Ichiro;
Matthias, Patrick;
Seiser, Christian;
Ellmeier, Wilfried

Publication type:

Article

CD4<sup>+</sup> T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2.

Published in:

Nature Immunology, 2014, v. 15, n. 5, p. 439, doi. 10.1038/ni.2864

By:

Boucheron, Nicole;
Tschismarov, Roland;
Goeschl, Lisa;
Moser, Mirjam A;
Lagger, Sabine;
Sakaguchi, Shinya;
Winter, Mircea;
Lenz, Florian;
Vitko, Dijana;
Breitwieser, Florian P;
Müller, Lena;
Hassan, Hammad;
Bennett, Keiryn L;
Colinge, Jacques;
Schreiner, Wolfgang;
Egawa, Takeshi;
Taniuchi, Ichiro;
Matthias, Patrick;
Seiser, Christian;
Ellmeier, Wilfried

Publication type:

Article

A review of methods and databases for metagenomic classification and assembly.

Published in:

Briefings in Bioinformatics, 2019, p. 1125, doi. 10.1093/bib/bbx120

By:

Breitwieser, Florian P;
Lu, Jennifer;
Salzberg, Steven L

Publication type:

Article

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1590-2

By:

Pertea, Mihaela;
Shumate, Alaina;
Pertea, Geo;
Varabyou, Ales;
Breitwieser, Florian P.;
Chang, Yu-Chi;
Madugundu, Anil K.;
Pandey, Akhilesh;
Salzberg, Steven L.

Publication type:

Article