Works by Breeze, Charles E.

Results: 28

Potentially causal associations between placental DNA methylation and schizophrenia and other neuropsychiatric disorders.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57760-3

By:

Cilleros-Portet, Ariadna;
Lesseur, Corina;
Marí, Sergi;
Cosin-Tomas, Marta;
Lozano, Manuel;
Irizar, Amaia;
Burt, Amber;
García-Santisteban, Iraia;
Garrido-Martín, Diego;
Escaramís, Geòrgia;
Hernangomez-Laderas, Alba;
Soler-Blasco, Raquel;
Breeze, Charles E.;
Gonzalez-Garcia, Bárbara P.;
Santa-Marina, Loreto;
Chen, Jia;
Llop, Sabrina;
Fernández, Mariana F.;
Vrijheid, Martine;
Ibarluzea, Jesús

Publication type:

Article

Potentially causal associations between placental DNA methylation and schizophrenia and other neuropsychiatric disorders.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57760-3

By:

Cilleros-Portet, Ariadna;
Lesseur, Corina;
Marí, Sergi;
Cosin-Tomas, Marta;
Lozano, Manuel;
Irizar, Amaia;
Burt, Amber;
García-Santisteban, Iraia;
Garrido-Martín, Diego;
Escaramís, Geòrgia;
Hernangomez-Laderas, Alba;
Soler-Blasco, Raquel;
Breeze, Charles E.;
Gonzalez-Garcia, Bárbara P.;
Santa-Marina, Loreto;
Chen, Jia;
Llop, Sabrina;
Fernández, Mariana F.;
Vrijheid, Martine;
Ibarluzea, Jesús

Publication type:

Article

Genomic characterization of cervical lymph node metastases in papillary thyroid carcinoma following the Chornobyl accident.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49292-z

By:

Morton, Lindsay M.;
Lee, Olivia W.;
Karyadi, Danielle M.;
Bogdanova, Tetiana I.;
Stewart, Chip;
Hartley, Stephen W.;
Breeze, Charles E.;
Schonfeld, Sara J.;
Cahoon, Elizabeth K.;
Drozdovitch, Vladimir;
Masiuk, Sergii;
Chepurny, Mykola;
Zurnadzhy, Liudmyla Yu;
Dai, Jieqiong;
Krznaric, Marko;
Yeager, Meredith;
Hutchinson, Amy;
Hicks, Belynda D.;
Dagnall, Casey L.;
Steinberg, Mia K.

Publication type:

Article

EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02126-9

By:

Teschendorff, Andrew E.;
Zhu, Tianyu;
Breeze, Charles E.;
Beck, Stephan

Publication type:

Article

Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs.

Published in:

Epigenetics & Chromatin, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0225-x

By:

van Dongen, Jenny;
Ehli, Erik A.;
Jansen, Rick;
van Beijsterveldt, Catharina E. M.;
Willemsen, Gonneke;
Hottenga, Jouke J.;
Kallsen, Noah A.;
Peyton, Shanna A.;
Breeze, Charles E.;
Kluft, Cornelis;
Heijmans, Bastiaan T.;
Bartels, Meike;
Davies, Gareth E.;
Boomsma, Dorret I.

Publication type:

Article

Tissue-independent and tissue-specific patterns of DNA methylation alteration in cancer.

Published in:

Epigenetics & Chromatin, 2016, v. 9, p. 1, doi. 10.1186/s13072-016-0058-4

By:

Yuting Chen;
Breeze, Charles E.;
Shao Zhen;
Beck, Stephan;
Teschendorff, Andrew E.

Publication type:

Article

African ancestry-derived APOL1 risk genotypes show proximal epigenetic associations.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10226-0

By:

Breeze, Charles E.;
Lin, Bridget M.;
Winkler, Cheryl A.;
Franceschini, Nora

Publication type:

Article

A mammalian methylation array for profiling methylation levels at conserved sequences.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28355-z

By:

Arneson, Adriana;
Haghani, Amin;
Thompson, Michael J.;
Pellegrini, Matteo;
Kwon, Soo Bin;
Vu, Ha;
Maciejewski, Emily;
Yao, Mingjia;
Li, Caesar Z.;
Lu, Ake T.;
Morselli, Marco;
Rubbi, Liudmilla;
Barnes, Bret;
Hansen, Kasper D.;
Zhou, Wanding;
Breeze, Charles E.;
Ernst, Jason;
Horvath, Steve

Publication type:

Article

Identical twins carry a persistent epigenetic signature of early genome programming.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25583-7

By:

van Dongen, Jenny;
Gordon, Scott D.;
McRae, Allan F.;
Odintsova, Veronika V.;
Mbarek, Hamdi;
Breeze, Charles E.;
Sugden, Karen;
Lundgren, Sara;
Castillo-Fernandez, Juan E.;
Hannon, Eilis;
Moffitt, Terrie E.;
Hagenbeek, Fiona A.;
van Beijsterveldt, Catharina E. M.;
Jan Hottenga, Jouke;
Tsai, Pei-Chien;
BIOS Consortium;
Hottenga, Jouke-Jan;
Genetics of DNA Methylation Consortium;
de Geus, Eco J. C.;
Spector, Timothy D.

Publication type:

Article

Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats.

Published in:

2021

By:

Wilkinson, Gerald S.;
Adams, Danielle M.;
Haghani, Amin;
Lu, Ake T.;
Zoller, Joseph;
Breeze, Charles E.;
Arnold, Bryan D.;
Ball, Hope C.;
Carter, Gerald G.;
Cooper, Lisa Noelle;
Dechmann, Dina K. N.;
Devanna, Paolo;
Fasel, Nicolas J.;
Galazyuk, Alexander V.;
Günther, Linus;
Hurme, Edward;
Jones, Gareth;
Knörnschild, Mirjam;
Lattenkamp, Ella Z.;
Li, Caesar Z.

Publication type:

Correction Notice

Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats.

Published in:

2022

By:

Wilkinson, Gerald S.;
Adams, Danielle M.;
Haghani, Amin;
Lu, Ake T.;
Zoller, Joseph;
Breeze, Charles E.;
Arnold, Bryan D.;
Ball, Hope C.;
Carter, Gerald G.;
Cooper, Lisa Noelle;
Dechmann, Dina K. N.;
Devanna, Paolo;
Fasel, Nicolas J.;
Galazyuk, Alexander V.;
Günther, Linus;
Hurme, Edward;
Jones, Gareth;
Knörnschild, Mirjam;
Lattenkamp, Ella Z.;
Li, Caesar Z.

Publication type:

Correction Notice

DNA methylation predicts age and provides insight into exceptional longevity of bats.

Published in:

Nature Communications, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21900-2

By:

Wilkinson, Gerald S.;
Adams, Danielle M.;
Haghani, Amin;
Lu, Ake T.;
Zoller, Joseph;
Breeze, Charles E.;
Arnold, Bryan D.;
Ball, Hope C.;
Carter, Gerald G.;
Cooper, Lisa Noelle;
Dechmann, Dina K. N.;
Devanna, Paolo;
Fasel, Nicolas J.;
Galazyuk, Alexander V.;
Günther, Linus;
Hurme, Edward;
Jones, Gareth;
Knörnschild, Mirjam;
Lattenkamp, Ella Z.;
Li, Caesar Z.

Publication type:

Article

Diversity in EWAS: current state, challenges, and solutions.

Published in:

Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01065-3

By:

Breeze, Charles E.;
Wong, Jason Y. Y.;
Beck, Stephan;
Berndt, Sonja I.;
Franceschini, Nora

Publication type:

Article

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1511-5

By:

Teschendorff, Andrew E.;
Breeze, Charles E.;
Zheng, Shijie C.;
Beck, Stephan

Publication type:

Article

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.

Published in:

Bioinformatics, 2020, v. 36, n. 6, p. 1950, doi. 10.1093/bioinformatics/btz833

By:

Zheng, Shijie C;
Breeze, Charles E;
Beck, Stephan;
Dong, Danyue;
Zhu, Tianyu;
Ma, Liangxiao;
Ye, Wei;
Zhang, Guoqing;
Teschendorff, Andrew E

Publication type:

Article

eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.

Published in:

Bioinformatics, 2019, v. 35, n. 22, p. 4767, doi. 10.1093/bioinformatics/btz456

By:

Breeze, Charles E;
Reynolds, Alex P;
Dongen, Jenny van;
Dunham, Ian;
Lazar, John;
Neph, Shane;
Vierstra, Jeff;
Bourque, Guillaume;
Teschendorff, Andrew E;
Stamatoyannopoulos, John A;
Beck, Stephan

Publication type:

Article

Examining the Utility of the Mammalian Methylation Array for Pan-Mammalian Analysis of Monozygotic Twinning.

Published in:

Epigenomes, 2024, v. 8, n. 4, p. 37, doi. 10.3390/epigenomes8040037

By:

van Dongen, Jenny;
Breeze, Charles E.

Publication type:

Article

The Fate of Ureteral Memokath Stent(s) in a High-Volume Referral Center: An Independent Long-Term Outcomes Review.

Published in:

Journal of Endourology, 2021, v. 35, n. 2, p. 180, doi. 10.1089/end.2020.0542

By:

Forster, Luke R.;
Watson, Laura;
Breeze, Charles E.;
Di Benedetto, Antonina;
Graham, Stuart;
Patki, Prasad;
Patel, Anup

Publication type:

Article

Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02560-3

By:

Breeze, Charles E.;
Haugen, Eric;
Reynolds, Alex;
Teschendorff, Andrew;
van Dongen, Jenny;
Lan, Qing;
Rothman, Nathaniel;
Bourque, Guillaume;
Dunham, Ian;
Beck, Stephan;
Stamatoyannopoulos, John;
Franceschini, Nora;
Berndt, Sonja I.

Publication type:

Article

Where next for the reproducibility agenda in computational biology?

Published in:

BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0288-x

By:

Lewis, Joanna;
Breeze, Charles E.;
Charlesworth, Jane;
Maclaren, Oliver J.;
Cooper, Jonathan

Publication type:

Article

Epigenetic clock and methylation studies in the rhesus macaque.

Published in:

GeroScience, 2021, v. 43, n. 5, p. 2441, doi. 10.1007/s11357-021-00429-8

By:

Horvath, Steve;
Zoller, Joseph A.;
Haghani, Amin;
Jasinska, Anna J.;
Raj, Ken;
Breeze, Charles E.;
Ernst, Jason;
Vaughan, Kelli L.;
Mattison, Julie A.

Publication type:

Article

Epigenetic reprogramming of fallopian tube fimbriae in BRCA mutation carriers defines early ovarian cancer evolution.

Published in:

Nature Communications, 2016, v. 7, n. 5, p. 11620, doi. 10.1038/ncomms11620

By:

Bartlett, Thomas E.;
Chindera, Kantaraja;
McDermott, Jacqueline;
Breeze, Charles E.;
Cooke, William R.;
Jones, Allison;
Reisel, Daniel;
Karegodar, Smita T.;
Arora, Rupali;
Beck, Stephan;
Menon, Usha;
Dubeau, Louis;
Widschwendter, Martin

Publication type:

Article

Genetic and environmental influences interact with age and sex in shaping the human methylome.

Published in:

Nature Communications, 2016, v. 7, n. 4, p. 1, doi. 10.1038/ncomms11115

By:

van Dongen, Jenny;
Nivard, Michel G.;
Willemsen, Gonneke;
Hottenga, Jouke-Jan;
Helmer, Quinta;
Dolan, Conor V.;
Ehli, Erik A.;
Davies, Gareth E.;
van Iterson, Maarten;
Breeze, Charles E.;
Beck, Stephan;
Eka Suchiman, H.;
Jansen, Rick;
van Meurs, Joyce B.;
Heijmans, Bastiaan T.;
Eline Slagboom, P.;
Boomsma, Dorret I.;
Hoen, Peter A. C. 't;
Pool, René;
van Greevenbroek, Marleen M. J.

Publication type:

Article

Epigenome-wide association study of kidney function identifies trans-ethnic and ethnic-specific loci.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00877-z

By:

Breeze, Charles E.;
Batorsky, Anna;
Lee, Mi Kyeong;
Szeto, Mindy D.;
Xu, Xiaoguang;
McCartney, Daniel L.;
Jiang, Rong;
Patki, Amit;
Kramer, Holly J.;
Eales, James M.;
Raffield, Laura;
Lange, Leslie;
Lange, Ethan;
Durda, Peter;
Liu, Yongmei;
Tracy, Russ P.;
Van Den Berg, David;
Evans, Kathryn L.;
Kraus, William E.;
Shah, Svati

Publication type:

Article

Unidirectional and bidirectional causation between smoking and blood DNA methylation: evidence from twin-based Mendelian randomisation.

Published in:

European Journal of Epidemiology, 2025, v. 40, n. 1, p. 55, doi. 10.1007/s10654-024-01187-5

By:

Singh, Madhurbain;
Dolan, Conor V.;
Lapato, Dana M.;
Hottenga, Jouke-Jan;
Pool, René;
Verhulst, Brad;
Boomsma, Dorret I.;
Breeze, Charles E.;
de Geus, Eco J. C.;
Hemani, Gibran;
Min, Josine L.;
Peterson, Roseann E.;
Maes, Hermine H. M.;
van Dongen, Jenny;
Neale, Michael C.

Publication type:

Article

HGF-rs12536657 and Ocular Biometric Parameters in Hyperopic Children, Emmetropic Adolescents, and Young Adults: A Multicenter Quantitative Trait Study.

Published in:

Journal of Ophthalmology, 2019, p. 1, doi. 10.1155/2019/7454250

By:

Barrio-Barrio, Jesús;
Bonet-Farriol, Elvira;
Galdós, Marta;
Noval, Susana;
Pueyo, Victoria;
Breeze, Charles E.;
Santos, Jose Luis;
Alfonso-Bartolozzi, Belén;
Recalde, Sergio;
Patiño-García, Ana

Publication type:

Article

DNA methylation predicts age and provides insight into exceptional longevity of bats.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21900-2

By:

Wilkinson, Gerald S.;
Adams, Danielle M.;
Haghani, Amin;
Lu, Ake T.;
Zoller, Joseph;
Breeze, Charles E.;
Arnold, Bryan D.;
Ball, Hope C.;
Carter, Gerald G.;
Cooper, Lisa Noelle;
Dechmann, Dina K. N.;
Devanna, Paolo;
Fasel, Nicolas J.;
Galazyuk, Alexander V.;
Günther, Linus;
Hurme, Edward;
Jones, Gareth;
Knörnschild, Mirjam;
Lattenkamp, Ella Z.;
Li, Caesar Z.

Publication type:

Article

FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03126-1

By:

Breeze, Charles E.;
Haugen, Eric;
Gutierrez-Arcelus, María;
Yao, Xiaozheng;
Teschendorff, Andrew;
Beck, Stephan;
Dunham, Ian;
Stamatoyannopoulos, John;
Franceschini, Nora;
Machiela, Mitchell J.;
Berndt, Sonja I.

Publication type:

Article