Works by Boulesteix, Anne-Laure

Results: 100

Data-driven simulations to assess the impact of study imperfections in time-to-event analyses.

Published in:

American Journal of Epidemiology, 2025, v. 194, n. 1, p. 233, doi. 10.1093/aje/kwae058

By:

Abrahamowicz, Michal;
Beauchamp, Marie-Eve;
Boulesteix, Anne-Laure;
Morris, Tim P;
Sauerbrei, Willi;
Kaufman, Jay S;
Panel, on behalf of the STRATOS Simulation

Publication type:

Article

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach.

Published in:

Theoretical Biology & Medical Modelling, 2005, v. 2, p. 23, doi. 10.1186/1742-4682-2-23

By:

Boulesteix, Anne-Laure;
Strimmer, Korbinian

Publication type:

Article

On the choice and influence of the number of boosting steps for high-dimensional linear Cox-models.

Published in:

Computational Statistics, 2018, v. 33, n. 3, p. 1195, doi. 10.1007/s00180-017-0773-8

By:

Seibold, Heidi;
Bernau, Christoph;
Boulesteix, Anne-Laure;
De Bin, Riccardo

Publication type:

Article

Letter to the Editor: On the term 'interaction' and related phrases in the literature on Random Forests.

Published in:

Briefings in Bioinformatics, 2015, v. 16, n. 2, p. 338, doi. 10.1093/bib/bbu012

By:

Boulesteix, Anne-Laure;
Janitza, Silke;
Hapfelmeier, Alexander;
Van Steen, Kristel;
Strobl, Carolin

Publication type:

Article

Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations.

Published in:

Briefings in Bioinformatics, 2012, v. 13, n. 3, p. 292, doi. 10.1093/bib/bbr053

By:

Boulesteix, Anne-Laure;
Bender, Andreas;
Lorenzo Bermejo, Justo;
Strobl, Carolin

Publication type:

Article

Editorial.

Published in:

Briefings in Bioinformatics, 2011, v. 12, n. 3, p. 187, doi. 10.1093/bib/bbr027

By:

Boulesteix, Anne-Laure

Publication type:

Article

Added predictive value of high-throughput molecular data to clinical data and its validation.

Published in:

Briefings in Bioinformatics, 2011, v. 12, n. 3, p. 215, doi. 10.1093/bib/bbq085

By:

Boulesteix, Anne-Laure;
Sauerbrei, Willi

Publication type:

Article

Stability and aggregation of ranked gene lists.

Published in:

Briefings in Bioinformatics, 2009, v. 10, n. 5, p. 556, doi. 10.1093/bib/bbp034

By:

Boulesteix, Anne-Laure;
Slawski, Martin

Publication type:

Article

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data.

Published in:

Briefings in Bioinformatics, 2007, v. 8, n. 1, p. 32, doi. 10.1093/bib/bb1016

By:

Boulesteix, Anne-Laure;
Strimmer, Korbinian

Publication type:

Article

Improved Outcome Prediction Across Data Sources Through Robust Parameter Tuning.

Published in:

Journal of Classification, 2021, v. 38, n. 2, p. 212, doi. 10.1007/s00357-020-09368-z

By:

Ellenbach, Nicole;
Boulesteix, Anne-Laure;
Bischl, Bernd;
Unger, Kristian;
Hornung, Roman

Publication type:

Article

A comparison of hyperparameter tuning procedures for clinical prediction models: A simulation study.

Published in:

Statistics in Medicine, 2024, v. 43, n. 6, p. 1119, doi. 10.1002/sim.9932

By:

Dunias, Zoë S.;
Van Calster, Ben;
Timmerman, Dirk;
Boulesteix, Anne‐Laure;
van Smeden, Maarten

Publication type:

Article

Statistical analysis of high-dimensional biomedical data: a gentle introduction to analytical goals, common approaches and challenges.

Published in:

BMC Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12916-023-02858-y

By:

Rahnenführer, Jörg;
De Bin, Riccardo;
Benner, Axel;
Ambrogi, Federico;
Lusa, Lara;
Boulesteix, Anne-Laure;
Migliavacca, Eugenia;
Binder, Harald;
Michiels, Stefan;
Sauerbrei, Willi;
McShane, Lisa

Publication type:

Article

Interleukin-22 is elevated in lavage from patients with lung cancer and other pulmonary diseases.

Published in:

2016

By:

Tufman, Amanda;
Huber, Rudolf Maria;
Völk, Stefanie;
Aigner, Frederic;
Edelmann, Martin;
Gamarra, Fernando;
Kiefl, Rosemarie;
Kahnert, Kathrin;
Tian, Fei;
Boulesteix, Anne-Laure;
Endres, Stefan;
Kobold, Sebastian

Publication type:

journal article

Ten Simple Rules for Reducing Overoptimistic Reporting in Methodological Computational Research.

Published in:

2015

By:

Boulesteix, Anne-Laure

Publication type:

Editorial

Tunability: Importance of Hyperparameters of Machine Learning Algorithms.

Published in:

Journal of Machine Learning Research, 2019, n. 30-56, p. 1

By:

Probst, Philipp;
Boulesteix, Anne-Laure;
Bischl, Bernd

Publication type:

Article

To Tune or Not to Tune the Number of Trees in Random Forest.

Published in:

Journal of Machine Learning Research, 2018, v. 18, n. 154-234, p. 1

By:

Probst, Philipp;
Boulesteix, Anne-Laure

Publication type:

Article

Towards evidence-based computational statistics: lessons from clinical research on the role and design of real-data benchmark studies.

Published in:

2017

By:

Boulesteix, Anne-Laure;
Wilson, Rory;
Hapfelmeier, Alexander

Publication type:

journal article

Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation.

Published in:

BMC Medical Research Methodology, 2016, v. 16, p. 1, doi. 10.1186/s12874-016-0239-7

By:

Wahl, Simone;
Boulesteix, Anne-Laure;
Zierer, Astrid;
Thorand, Barbara;
de Wiel, Mark Avan

Publication type:

Article

A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization.

Published in:

2015

By:

Hornung, Roman;
Bernau, Christoph;
Truntzer, Caroline;
Wilson, Rory;
Stadler, Thomas;
Boulesteix, Anne-Laure

Publication type:

journal article

Added predictive value of omics data: specific issues related to validation illustrated by two case studies.

Published in:

BMC Medical Research Methodology, 2014, v. 14, p. 1, doi. 10.1186/1471-2288-14-117

By:

De Bin, Riccardo;
Herold, Tobias;
Boulesteix, Anne-Laure

Publication type:

Article

Added predictive value of omics data: specific issues related to validation illustrated by two case studies.

Published in:

2014

By:

Bin, Riccardo De;
Herold, Tobias;
Boulesteix, Anne-Laure;
De Bin, Riccardo

Publication type:

journal article

Priority-Lasso: a simple hierarchical approach to the prediction of clinical outcome using multi-omics data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2344-6

By:

Klau, Simon;
Jurinovic, Vindi;
Hornung, Roman;
Herold, Tobias;
Boulesteix, Anne-Laure

Publication type:

Article

Random forest versus logistic regression: a large-scale benchmark experiment.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2264-5

By:

Couronné, Raphael;
Probst, Philipp;
Boulesteix, Anne-Laure

Publication type:

Article

Gender mismatch in allograft aortic valve surgery.

Published in:

Interactive Cardiovascular & Thoracic Surgery, 2015, v. 21, n. 3, p. 329, doi. 10.1093/icvts/ivv151

By:

Böll, Bernhard Michael;
Vogt, Ferdinand;
Boulesteix, Anne Laure;
Schmitz, Christoph

Publication type:

Article

Homografts in aortic position: does blood group incompatibility have an impact on patient outcomes?

Published in:

Interactive Cardiovascular & Thoracic Surgery, 2013, v. 16, n. 5, p. 619, doi. 10.1093/icvts/ivs515

By:

Vogt, Ferdinand;
Böll, Bernhard Michael;
Boulesteix, Anne-Laure;
Kilian, Eckehard;
Santarpino, Giuseppe;
Reichart, Bruno;
Schmitz, Christoph

Publication type:

Article

Special issue: Artificial intelligence in genomics.

Published in:

Human Genetics, 2022, v. 141, n. 9, p. 1449, doi. 10.1007/s00439-022-02472-7

By:

Boulesteix, Anne-Laure;
Wright, Marvin

Publication type:

Article

Statistical learning approaches in the genetic epidemiology of complex diseases.

Published in:

Human Genetics, 2020, v. 139, n. 1, p. 73, doi. 10.1007/s00439-019-01996-9

By:

Boulesteix, Anne-Laure;
Wright, Marvin N.;
Hoffmann, Sabine;
König, Inke R.

Publication type:

Article

Improved prediction of complex diseases by common genetic markers: state of the art and further perspectives.

Published in:

Human Genetics, 2016, v. 135, n. 3, p. 259, doi. 10.1007/s00439-016-1636-z

By:

Müller, Bent;
Wilcke, Arndt;
Boulesteix, Anne-Laure;
Brauer, Jens;
Passarge, Eberhard;
Boltze, Johannes;
Kirsten, Holger

Publication type:

Article

A white paper on good research practices in benchmarking: The case of cluster analysis.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2023, v. 13, n. 6, p. 1, doi. 10.1002/widm.1511

By:

Van Mechelen, Iven;
Boulesteix, Anne‐Laure;
Dangl, Rainer;
Dean, Nema;
Hennig, Christian;
Leisch, Friedrich;
Steinley, Douglas;
Warrens, Matthijs J.

Publication type:

Article

Hyperparameter optimization: Foundations, algorithms, best practices, and open challenges.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2023, v. 13, n. 2, p. 1, doi. 10.1002/widm.1484

By:

Bischl, Bernd;
Binder, Martin;
Lang, Michel;
Pielok, Tobias;
Richter, Jakob;
Coors, Stefan;
Thomas, Janek;
Ullmann, Theresa;
Becker, Marc;
Boulesteix, Anne‐Laure;
Deng, Difan;
Lindauer, Marius

Publication type:

Article

Validation of cluster analysis results on validation data: A systematic framework.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2022, v. 12, n. 3, p. 1, doi. 10.1002/widm.1444

By:

Ullmann, Theresa;
Hennig, Christian;
Boulesteix, Anne‐Laure

Publication type:

Article

Over‐optimism in benchmark studies and the multiplicity of design and analysis options when interpreting their results.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2022, v. 12, n. 2, p. 1, doi. 10.1002/widm.1441

By:

Nießl, Christina;
Herrmann, Moritz;
Wiedemann, Chiara;
Casalicchio, Giuseppe;
Boulesteix, Anne‐Laure

Publication type:

Article

Hyperparameters and tuning strategies for random forest.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2019, v. 9, n. 3, p. N.PAG, doi. 10.1002/widm.1301

By:

Probst, Philipp;
Wright, Marvin N.;
Boulesteix, Anne‐Laure

Publication type:

Article

Overview of random forest methodology and practical guidance with emphasis on computational biology and bioinformatics.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2012, v. 2, n. 6, p. 493, doi. 10.1002/widm.1072

By:

Boulesteix, Anne-Laure;
Janitza, Silke;
Kruppa, Jochen;
König, Inke R.

Publication type:

Article

From RNA sequencing measurements to the final results: A practical guide to navigating the choices and uncertainties of gene set analysis.

Published in:

WIREs: Computational Statistics, 2024, v. 16, n. 1, p. 1, doi. 10.1002/wics.1643

By:

Wünsch, Milena;
Sauer, Christina;
Callahan, Patrick;
Hinske, Ludwig Christian;
Boulesteix, Anne‐Laure

Publication type:

Article

Prediction approaches for partly missing multi‐omics covariate data: A literature review and an empirical comparison study.

Published in:

WIREs: Computational Statistics, 2024, v. 16, n. 1, p. 1, doi. 10.1002/wics.1626

By:

Hornung, Roman;
Ludwigs, Frederik;
Hagenberg, Jonas;
Boulesteix, Anne‐Laure

Publication type:

Article

Centrosome abnormalities in head and neck squamous cell carcinoma (HNSCC).

Published in:

Acta Oto-Laryngologica, 2009, v. 129, n. 2, p. 205, doi. 10.1080/00016480802165767

By:

Reiter, Rudolf;
Gais, Peter;
Steuer-Vogt, Miriam K.;
Boulesteix, Anne-Laure;
Deutschle, Tom;
Hampel, Regina;
Wagenpfeil, Stefan;
Rauser, Sandra;
Walch, Axel;
Bink, Karin;
Jütting, Uta;
Neff, Frauke;
Arnold, Wolfgang;
Höfler, Heinz;
Pickhard, Anja

Publication type:

Article

Live music reduces stress levels in very low-birthweight infants.

Published in:

Acta Paediatrica, 2015, v. 104, n. 4, p. 360, doi. 10.1111/apa.12913

By:

Schwilling, Diana;
Vogeser, Michael;
Kirchhoff, Fabian;
Schwaiblmair, Frauke;
Boulesteix, Anne‐Laure;
Schulze, Andreas;
Flemmer, Andreas W.

Publication type:

Article

IPF-LASSO: Integrative L<sub>1</sub>-Penalized Regression with Penalty Factors for Prediction Based on Multi-Omics Data.

Published in:

Computational & Mathematical Methods in Medicine, 2017, p. 1, doi. 10.1155/2017/7691937

By:

Boulesteix, Anne-Laure;
De Bin, Riccardo;
Jiang, Xiaoyu;
Fuchs, Mathias

Publication type:

Article

A plea for taking all available clinical information into account when assessing the predictive value of omics data.

Published in:

2019

By:

Volkmann, Alexander;
De Bin, Riccardo;
Sauerbrei, Willi;
Boulesteix, Anne-Laure

Publication type:

journal article

Multiple Testing for SNP-SNP Interactions.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1315

By:

Boulesteix, Anne-Laure;
Strobl, Carolin;
Wagenpfeil, Stefan;
Wichmann, H.-Erich;
Weidinger, Stefan

Publication type:

Article

Reader's reaction to "Dimension Reduction for Classification with Gene Expression Microarray Data" by Dai et al (2006).

Published in:

Statistical Applications in Genetics & Molecular Biology, 2006, v. 5, n. 1, p. 1, doi. 10.2202/1544-6115.1226

By:

Boulesteix, Anne-Laure

Publication type:

Article

PLS Dimension Reduction for Classification with Microarray Data.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2004, v. 3, n. 1, p. 1, doi. 10.2202/1544-6115.1075

By:

Boulesteix, Anne-Laure

Publication type:

Article

Use of pretransformation to cope with extreme values in important candidate features.

Published in:

Biometrical Journal, 2011, v. 53, n. 4, p. 673, doi. 10.1002/bimj.201000189

By:

Boulesteix, Anne-Laure;
Guillemot, Vincent;
Sauerbrei, Willi

Publication type:

Article

Stability Investigations of Multivariable Regression Models Derived from Low- and High-Dimensional Data.

Published in:

Journal of Biopharmaceutical Statistics, 2011, v. 21, n. 6, p. 1206, doi. 10.1080/10543406.2011.629890

By:

Sauerbrei, Willi;
Boulesteix, Anne-Laure;
Binder, Harald

Publication type:

Article

Cross-study validation for the assessment of prediction algorithms.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i105, doi. 10.1093/bioinformatics/btu279

By:

Bernau, Christoph;
Riester, Markus;
Boulesteix, Anne-Laure;
Parmigiani, Giovanni;
Huttenhower, Curtis;
Waldron, Levi;
Trippa, Lorenzo

Publication type:

Article

On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith et al.

Published in:

2013

By:

Boulesteix, Anne-Laure

Publication type:

Letter

Over-optimism in bioinformatics: an illustration.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1990, doi. 10.1093/bioinformatics/btq323

By:

Jelizarow, Monika;
Guillemot, Vincent;
Tenenhaus, Arthur;
Strimmer, Korbinian;
Boulesteix, Anne-Laure

Publication type:

Article

Over-optimism in bioinformatics research.

Published in:

2010

By:

Boulesteix, Anne-Laure

Publication type:

Letter

Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-015-0870-z

By:

Hornung, Roman;
Boulesteix, Anne-Laure;
Causeur, David

Publication type:

Article