Works by Bornberg‐Bauer, Erich

Results: 103

The sieve element occlusion gene family in dicotyledonous plants.

Published in:

Plant Signaling & Behavior, 2011, v. 6, n. 1, p. 151, doi. 10.4161/psb.6.1.14308

By:

Ernst, Antonia M.;
Rüping, Boris;
Jekat, Stephan B.;
Nordzieke, Steffen;
Reineke, Anna R.;
Müller, Boje;
Bornberg-Bauer, Erich;
Prüfer, Dirk;
Noll, Gundula A.

Publication type:

Article

DOGMA: domain-based transcriptome and proteome quality assessment.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2577, doi. 10.1093/bioinformatics/btw231

By:

Dohmen, Elias;
Kremer, Lukas P. M.;
Bornberg-Bauer, Erich;
Kemena, Carsten

Publication type:

Article

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 282, doi. 10.1093/bioinformatics/btt640

By:

Moore, Andrew D.;
Held, Andreas;
Terrapon, Nicolas;
Weiner, January;
Bornberg-Bauer, Erich

Publication type:

Article

Rapid similarity search of proteins using alignments of domain arrangements.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 274, doi. 10.1093/bioinformatics/btt379

By:

Terrapon, Nicolas;
Weiner, January;
Grath, Sonja;
Moore, Andrew D.;
Bornberg-Bauer, Erich

Publication type:

Article

Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).

Published in:

Bioinformatics, 2007, v. 23, n. 14, p. 1834, doi. 10.1093/bioinformatics/btm240

By:

Francois Beaussart;
January Weiner;
Erich Bornberg-Bauer

Publication type:

Article

Lifespan prolonging mechanisms and insulin upregulation without fat accumulation in long-lived reproductives of a higher termite.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-021-02974-6

By:

Séité, Sarah;
Harrison, Mark C.;
Sillam-Dussès, David;
Lupoli, Roland;
Van Dooren, Tom J. M.;
Robert, Alain;
Poissonnier, Laure-Anne;
Lemainque, Arnaud;
Renault, David;
Acket, Sébastien;
Andrieu, Muriel;
Viscarra, José;
Sul, Hei Sook;
de Beer, Z. Wilhelm;
Bornberg-Bauer, Erich;
Vasseur-Cognet, Mireille

Publication type:

Article

Comparative analyses of caste, sex, and developmental stage‐specific transcriptomes in two Temnothorax ants.

Published in:

Ecology & Evolution (20457758), 2020, v. 10, n. 10, p. 4193, doi. 10.1002/ece3.6187

By:

Gstöttl, Claudia;
Stoldt, Marah;
Jongepier, Evelien;
Bornberg‐Bauer, Erich;
Feldmeyer, Barbara;
Heinze, Jürgen;
Foitzik, Susanne

Publication type:

Article

Comparative analyses of caste, sex, and developmental stage‐specific transcriptomes in two Temnothorax ants.

Published in:

Ecology & Evolution (20457758), 2020, v. 10, n. 9, p. 4193, doi. 10.1002/ece3.6187

By:

Gstöttl, Claudia;
Stoldt, Marah;
Jongepier, Evelien;
Bornberg‐Bauer, Erich;
Feldmeyer, Barbara;
Heinze, Jürgen;
Foitzik, Susanne

Publication type:

Article

Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness.

Published in:

Integrative Biology, 2012, v. 4, n. 5, p. 480, doi. 10.1039/c2ib00109h

By:

Gu, Jenny;
Weber, Katrin;
Klemp, Elisabeth;
Winters, Gidon;
Franssen, Susanne U.;
Wienpahl, Isabell;
Huylmans, Ann-Kathrin;
Zecher, Karsten;
Reusch, Thorsten B. H.;
Bornberg-Bauer, Erich;
Weber, Andreas P. M.

Publication type:

Article

Eusocial Transition in Blattodea: Transposable Elements and Shifts of Gene Expression.

Published in:

Genes, 2022, v. 13, n. 11, p. 1948, doi. 10.3390/genes13111948

By:

Berger, Juliette;
Legendre, Frédéric;
Zelosko, Kevin-Markus;
Harrison, Mark C.;
Grandcolas, Philippe;
Bornberg-Bauer, Erich;
Fouks, Bertrand

Publication type:

Article

New Genomic Signals Underlying the Emergence of Human Proto-Genes.

Published in:

Genes, 2022, v. 13, n. 2, p. 284, doi. 10.3390/genes13020284

By:

Grandchamp, Anna;
Berk, Katrin;
Dohmen, Elias;
Bornberg-Bauer, Erich

Publication type:

Article

Expression and Functional Characterization of c-Fos Gene in Chinese Fire-Bellied Newt Cynops orientalis.

Published in:

Genes, 2021, v. 12, n. 2, p. 205, doi. 10.3390/genes12020205

By:

Ye, Gang;
Feng, Yalong;
Mi, Zhaoxiang;
Wang, Du;
Lin, Shuai;
Chen, Fulin;
Cui, Jihong;
Yu, Yuan;
Bornberg-Bauer, Erich

Publication type:

Article

Vector redesign and in‐droplet cell‐growth improves enrichment and recovery in live Escherichia coli.

Published in:

Microbial Biotechnology, 2022, v. 15, n. 11, p. 2845, doi. 10.1111/1751-7915.14144

By:

Eenink, Bernard D. G.;
Kaminski, Tomasz S.;
Bornberg‐Bauer, Erich;
Jose, Joachim;
Hollfelder, Florian;
van Loo, Bert

Publication type:

Article

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing.

Published in:

BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-227

By:

Franssen, Susanne U;
Shrestha, Roshan P;
Bräutigam, Andrea;
Bornberg-Bauer, Erich;
Weber, Andreas PM

Publication type:

Article

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 227, doi. 10.1186/1471-2164-12-227

By:

Franssen, Susanne U.;
Shrestha, Roshan P.;
Bräutigam, Andrea;
Bornberg-Bauer, Erich;
Weber, Andreas P. M.

Publication type:

Article

Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network.

Published in:

BMC Genomics, 2006, v. 7, p. 107, doi. 10.1186/1471-2164-7-107

By:

Gregory D Amoutzias;
Erich Bornberg-Bauer;
Stephen G Oliver;
David L Robertson

Publication type:

Article

Metabolism of halophilic archaea.

Published in:

Extremophiles, 2008, v. 12, n. 2, p. 177, doi. 10.1007/s00792-008-0138-x

By:

Falb, Michaela;
Müller, Kerstin;
Königsmaier, Lisa;
Oberwinkler, Tanja;
Horn, Patrick;
Gronau, Susanne;
Gonzalez, Orland;
Pfeiffer, Friedhelm;
Bornberg-Bauer, Erich;
Oesterhelt, Dieter

Publication type:

Article

Rapid motif-based prediction of circular permutations in multi-domain proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 932, doi. 10.1093/bioinformatics/bti085

By:

January Weiner;
Geraint Thomas;
Erich Bornberg-Bauer

Publication type:

Article

TreeWiz: interactive exploration of huge trees.

Published in:

Bioinformatics, 2002, v. 18, n. 1, p. 109, doi. 10.1093/bioinformatics/18.1.109

By:

Rost, Ursula;
Bornberg-Bauer, Erich

Publication type:

Article

Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets.

Published in:

Bioinformatics, 1999, v. 15, n. 3, p. 234, doi. 10.1093/bioinformatics/15.3.234

By:

Backofen, Rolf;
Will, Sebastian;
Bornberg‐Bauer, Erich

Publication type:

Article

Specific Gene Expression Responses to Parasite Genotypes Reveal Redundancy of Innate Immunity in Vertebrates.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0108001

By:

Haase, David;
Rieger, Jennifer K.;
Witten, Anika;
Stoll, Monika;
Bornberg-Bauer, Erich;
Kalbe, Martin;
Reusch, Thorsten B. H.

Publication type:

Article

Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031410

By:

Mundry, Marvin;
Bornberg-Bauer, Erich;
Sammeth, Michael;
Feulner, Philine G. D.

Publication type:

Article

Comparative analysis of lincRNA in insect species.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0985-0

By:

Lopez-Ezquerra, Alberto;
Harrison, Mark C.;
Bornberg-Bauer, Erich

Publication type:

Article

More effective transposon regulation in fertile, long‐lived termite queens than in sterile workers.

Published in:

Molecular Ecology, 2023, v. 32, n. 2, p. 369, doi. 10.1111/mec.16753

By:

Post, Frederik;
Bornberg‐Bauer, Erich;
Vasseur‐Cognet, Mireille;
Harrison, Mark C.

Publication type:

Article

Evidence for a conserved queen‐worker genetic toolkit across slave‐making ants and their ant hosts.

Published in:

Molecular Ecology, 2022, v. 31, n. 19, p. 4991, doi. 10.1111/mec.16639

By:

Feldmeyer, Barbara;
Gstöttl, Claudia;
Wallner, Jennifer;
Jongepier, Evelien;
Séguret, Alice;
Grasso, Donato A.;
Bornberg‐Bauer, Erich;
Foitzik, Susanne;
Heinze, Jurgen

Publication type:

Article

Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks.

Published in:

Molecular Ecology, 2016, v. 25, n. 4, p. 943, doi. 10.1111/mec.13520

By:

Huang, Yun;
Chain, Frédéric J. J.;
Panchal, Mahesh;
Eizaguirre, Christophe;
Kalbe, Martin;
Lenz, Tobias L.;
Samonte, Irene E.;
Stoll, Monika;
Bornberg‐Bauer, Erich;
Reusch, Thorsten B. H.;
Milinski, Manfred;
Feulner, Philine G. D.

Publication type:

Article

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks.

Published in:

Molecular Ecology, 2013, v. 22, n. 3, p. 635, doi. 10.1111/j.1365-294X.2012.05680.x

By:

FEULNER, PHILINE G. D.;
CHAIN, FRÉDÉRIC J. J.;
PANCHAL, MAHESH;
EIZAGUIRRE, CHRISTOPHE;
KALBE, MARTIN;
LENZ, TOBIAS L.;
MUNDRY, MARVIN;
SAMONTE, IRENE E.;
STOLL, MONIKA;
MILINSKI, MANFRED;
REUSCH, THORSTEN B. H.;
BORNBERG‐BAUER, ERICH

Publication type:

Article

Signals: Tinkering with Domains.

Published in:

Science Signaling, 2010, v. 3, n. 139, p. 1, doi. 10.1126/scisignal.3139pe31

By:

Bornberg-Bauer, Erich

Publication type:

Article

The look-ahead effect of phenotypic mutations.

Published in:

Biology Direct, 2008, v. 3, p. 1, doi. 10.1186/1745-6150-3-18

By:

Whitehead, Dion J.;
Wilke, Claus O.;
Vernazobres, David;
Bornberg-Bauer, Erich

Publication type:

Article

The modular nature of protein evolution: domain rearrangement rates across eukaryotic life.

Published in:

BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-1591-0

By:

Dohmen, Elias;
Klasberg, Steffen;
Bornberg-Bauer, Erich;
Perrey, Sören;
Kemena, Carsten

Publication type:

Article

Domain similarity based orthology detection.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0570-8

By:

Bitard-Feildel, Tristan;
Kemena, Carsten;
Greenwood, Jenny M.;
Bornberg-Bauer, Erich

Publication type:

Article

MDAT- Aligning multiple domain arrangements.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-014-0442-7

By:

Kemena, Carsten;
Bitard-Feildel, Tristan;
Bornberg-Bauer, Erich

Publication type:

Article

MDAT- Aligning multiple domain arrangements.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 354, doi. 10.1186/s12859-014-0442-7

By:

Kemena, Carsten;
Feildel, Tristan Bitard;
Bornberg-Bauer, Erich

Publication type:

Article

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

Published in:

Plant Journal, 2007, v. 50, n. 2, p. 347, doi. 10.1111/j.1365-313X.2007.03052.x

By:

Kilian, Joachim;
Whitehead, Dion;
Horak, Jakub;
Wanke, Dierk;
Weinl, Stefan;
Batistic, Oliver;
D'Angelo, Cecilia;
Bornberg-Bauer, Erich;
Kudla, Jörg;
Harter, Klaus

Publication type:

Article

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.

Published in:

BMC Systems Biology, 2007, v. 1, p. 34, doi. 10.1186/1752-0509-1-34

By:

Amoutzias, Gregory D.;
Pichler, Elgar E.;
Mian, Nina;
De Graaf, David;
Imsiridou, Anastasia;
Robinson-Rechavi, Marc;
Bornberg-Bauer, Erich;
Robertson, David L.;
Oliver, Stephen G.

Publication type:

Article

Origins and structural properties of novel and de novo protein domains during insect evolution.

Published in:

FEBS Journal, 2018, v. 285, n. 14, p. 2605, doi. 10.1111/febs.14504

By:

Klasberg, Steffen;
Bitard‐Feildel, Tristan;
Callebaut, Isabelle;
Bornberg‐Bauer, Erich

Publication type:

Article

Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes.

Published in:

PLoS Biology, 2015, v. 13, n. 6, p. 1, doi. 10.1371/journal.pbio.1002169

By:

Masri, Leila;
Branca, Antoine;
Sheppard, Anna E.;
Papkou, Andrei;
Laehnemann, David;
Guenther, Patrick S.;
Prahl, Swantje;
Saebelfeld, Manja;
Hollensteiner, Jacqueline;
Liesegang, Heiko;
Brzuszkiewicz, Elzbieta;
Daniel, Rolf;
Michiels, Nicolaas K.;
Schulte, Rebecca D.;
Kurtz, Joachim;
Rosenstiel, Philip;
Telschow, Arndt;
Bornberg-Bauer, Erich;
Schulenburg, Hinrich

Publication type:

Article

Enzyme sub-functionalization driven by regulation.

Published in:

EMBO Reports, 2017, v. 18, n. 7, p. 1043, doi. 10.15252/embr.201744383

By:

Loo, Bert;
Bornberg‐Bauer, Erich

Publication type:

Article

Conceptual data modelling for bioinformatics.

Published in:

Briefings in Bioinformatics, 2002, v. 3, n. 2, p. 166, doi. 10.1093/bib/3.2.166

By:

Bornberg-Bauer, Erich;
Paton, Norman W.

Publication type:

Article

Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus.

Published in:

New Phytologist, 2015, v. 206, n. 4, p. 1328, doi. 10.1111/nph.13211

By:

Kersting, Anna R.;
Mizrachi, Eshchar;
Bornberg‐Bauer, Erich;
Myburg, Alexander A.

Publication type:

Article

Structural and functional characterization of a putative de novo gene in Drosophila.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21667-6

By:

Lange, Andreas;
Patel, Prajal H.;
Heames, Brennen;
Damry, Adam M.;
Saenger, Thorsten;
Jackson, Colin J.;
Findlay, Geoffrey D.;
Bornberg-Bauer, Erich

Publication type:

Article

Cover Image.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2018, v. 330, n. 5, p. 1, doi. 10.1002/jez.b.22827

By:

Bornberg‐Bauer, Erich

Publication type:

Article

The first cockroach genome and its significance for understanding development and the evolution of insect eusociality.

Published in:

2018

By:

Bornberg‐Bauer, Erich;
Harrison, Mark C.;
Jongepier, Evelien

Publication type:

Editorial

Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2018, v. 330, n. 5, p. 254, doi. 10.1002/jez.b.22824

By:

Harrison, Mark C.;
Arning, Nicolas;
Kremer, Lukas P. M.;
Ylla, Guillem;
Belles, Xavier;
Bornberg‐Bauer, Erich;
Huylmans, Ann Kathrin;
Jongepier, Evelien;
Piulachs, Maria‐Dolors;
Richards, Stephen;
Schal, Coby

Publication type:

Article

Reconstructed evolution of insulin receptors in insects reveals duplications in early insects and cockroaches.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2018, v. 330, n. 5, p. 305, doi. 10.1002/jez.b.22809

By:

Kremer, Lukas Peter Maria;
Korb, Judith;
Bornberg‐Bauer, Erich

Publication type:

Article

Remodeling of the juvenile hormone pathway through caste‐biased gene expression and positive selection along a gradient of termite eusociality.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2018, v. 330, n. 5, p. 296, doi. 10.1002/jez.b.22805

By:

Jongepier, Evelien;
Kemena, Carsten;
Lopez‐Ezquerra, Alberto;
Belles, Xavier;
Bornberg‐Bauer, Erich;
Korb, Judith

Publication type:

Article

Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'.

Published in:

Biochemical Society Transactions, 2015, v. 43, n. 5, p. 867, doi. 10.1042/BST20150089

By:

Bornberg-Bauer, Erich;
Schmitz, Jonathan;
Heberlein, Magdalena

Publication type:

Article

Infection routes matter in population-specific responses of the red flour beetle to the entomopathogen Bacillus thuringiensis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-445

By:

Behrens, Sarah;
Peuß, Robert;
Milutinović, Barbara;
Eggert, Hendrik;
Esser, Daniela;
Rosenstiel, Philip;
Schulenburg, Hinrich;
Bornberg-Bauer, Erich;
Kurtz, Joachim

Publication type:

Article

Genomic divergence between nine- and three-spined sticklebacks.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-756

By:

Baocheng Guo;
Frédéric J. J. Chain;
Bornberg-Bauer, Erich;
Leder, Erica H.;
Merilä, Juha

Publication type:

Article

A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster.

Published in:

PLoS Genetics, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pgen.1009787

By:

Rivard, Emily L.;
Ludwig, Andrew G.;
Patel, Prajal H.;
Grandchamp, Anna;
Arnold, Sarah E.;
Berger, Alina;
Scott, Emilie M.;
Kelly, Brendan J.;
Mascha, Grace C.;
Bornberg-Bauer, Erich;
Findlay, Geoffrey D.

Publication type:

Article