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eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.
- Published in:
- Molecular Biology & Evolution, 2021, v. 38, n. 12, p. 5825, doi. 10.1093/molbev/msab293
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- Publication type:
- Article
Identical variant TSG101 transcripts in soft tissue sarcomas and various non-neoplastic tissues.
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- Molecular Carcinogenesis, 1998, v. 23, n. 4, p. 195, doi. 10.1002/(SICI)1098-2744(199812)23:4<195::AID-MC1>3.0.CO;2-G
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- Publication type:
- Article
Evolution and regulation of cellular periodic processes: a role for paralogues.
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- EMBO Reports, 2010, v. 11, n. 3, p. 233, doi. 10.1038/embor.2010.9
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- Publication type:
- Article
Environments shape the nucleotide composition of genomes.
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- EMBO Reports, 2005, v. 6, n. 12, p. 1208, doi. 10.1038/sj.embor.7400538
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- Publication type:
- Article
The way we write.
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- EMBO Reports, 2003, v. 4, n. 5, p. 446, doi. 10.1038/sj.embor.embor833
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- Publication type:
- Article
Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing.
- Published in:
- Advanced Science, 2024, v. 11, n. 13, p. 1, doi. 10.1002/advs.202305818
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- Publication type:
- Article
Long‐Read Sequencing Reveals Extensive DNA Methylations in Human Gut Phagenome Contributed by Prevalently Phage‐Encoded Methyltransferases.
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- Advanced Science, 2023, v. 10, n. 25, p. 1, doi. 10.1002/advs.202302159
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- Publication type:
- Article
GUNC: detection of chimerism and contamination in prokaryotic genomes.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02393-0
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- Publication type:
- Article
Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 7, p. 1988, doi. 10.1093/gbe/evv121
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- Publication type:
- Article
metaSNV: A tool for metagenomic strain level analysis.
- Published in:
- PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0182392
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- Publication type:
- Article
The Tenth Asia Pacific Bioinformatics Conference (APBC 2012).
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- 2012
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- Publication type:
- Proceeding
Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instability.
- Published in:
- 2008
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- Publication type:
- journal article
Homology-based functional proteomics by mass spectrometry: Application to the Xenopus microtubule-associated proteome.
- Published in:
- Proteomics, 2004, v. 4, n. 9, p. 2707, doi. 10.1002/pmic.200300813
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- Publication type:
- Article
In situ structural analysis of the human nuclear pore complex.
- Published in:
- Nature, 2015, v. 526, n. 7571, p. 140, doi. 10.1038/nature15381
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- Publication type:
- Article
Luminal signalling links cell communication to tissue architecture during organogenesis.
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- Nature, 2014, v. 515, n. 7525, p. 120, doi. 10.1038/nature13852
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- Publication type:
- Article
The rhodanese/Cdc25 phosphatase superfamily.
- Published in:
- EMBO Reports, 2002, v. 3, n. 8, p. 741, doi. 10.1093/embo-reports/kvf150
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- Publication type:
- Article
A complex prediction: three-dimensional model of the yeast exosome.
- Published in:
- 2002
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- Publication type:
- Report
Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins.
- Published in:
- EMBO Reports, 2000, v. 1, n. 1, p. 53, doi. 10.1093/embo-reports/kvd009
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- Publication type:
- Article
Spore number control and breeding in Saccharomyces cerevisiae: a key role for a self-organizing system.
- Published in:
- Journal of Cell Biology, 2005, v. 171, n. 4, p. 627, doi. 10.1083/jcb.200507168
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- Publication type:
- Article
Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.26066
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- Publication type:
- Article
Pathogenesis of DNA repair-deficient cancers: a statistical meta-analysis of putative Real Common Target genes.
- Published in:
- Oncogene, 2003, v. 22, n. 15, p. 2226, doi. 10.1038/sj.onc.1206421
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- Publication type:
- Article
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W78, doi. 10.1093/nar/gkae268
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- Publication type:
- Article
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D777, doi. 10.1093/nar/gkad943
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- Publication type:
- Article
InterPro in 2022.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. D1, p. D418, doi. 10.1093/nar/gkac993
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- Publication type:
- Article
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D760, doi. 10.1093/nar/gkac1078
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- Publication type:
- Article
eggNOG 6.0: enabling comparative genomics across 12 535 organisms.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D389, doi. 10.1093/nar/gkac1022
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- Publication type:
- Article
STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D638, doi. 10.1093/nar/gkac1000
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- Publication type:
- Article
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 6, p. 3155, doi. 10.1093/nar/gkac163
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- Publication type:
- Article
Correction to 'The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets'.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W293, doi. 10.1093/nar/gkab301
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- Publication type:
- Article
The InterPro protein families and domains database: 20 years on.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D344, doi. 10.1093/nar/gkaa977
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- Publication type:
- Article
SMART: recent updates, new developments and status in 2020.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D458, doi. 10.1093/nar/gkaa937
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- Publication type:
- Article
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D605, doi. 10.1093/nar/gkaa1074
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- Publication type:
- Article
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D621, doi. 10.1093/nar/gkz1002
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- Publication type:
- Article
Interactive Tree Of Life (iTOL) v4: recent updates and new developments.
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- Nucleic Acids Research, 2019, v. 47, n. W1, p. W256, doi. 10.1093/nar/gkz239
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- Publication type:
- Article
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D607, doi. 10.1093/nar/gky1131
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- Publication type:
- Article
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D351, doi. 10.1093/nar/gky1100
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- Publication type:
- Article
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D309, doi. 10.1093/nar/gky1085
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- Publication type:
- Article
iPath3.0: interactive pathways explorer v3.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W510, doi. 10.1093/nar/gky299
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- Publication type:
- Article
MVP: a microbe--phage interaction database.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D700, doi. 10.1093/nar/gkx1124
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- Publication type:
- Article
20 years of the SMART protein domain annotation resource.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D493, doi. 10.1093/nar/gkx922
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- Publication type:
- Article
The STRING database in 2017: quality-controlled protein--protein association networks, made broadly accessible.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D362, doi. 10.1093/nar/gkw937
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- Publication type:
- Article
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D529, doi. 10.1093/nar/gkw989
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- Publication type:
- Article
InterPro in 2017--beyond protein family and domain annotations.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D190, doi. 10.1093/nar/gkw1107
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- Publication type:
- Article
OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D940, doi. 10.1093/nar/gkw1013
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- Publication type:
- Article
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W242, doi. 10.1093/nar/gkw290
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- Publication type:
- Article
Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 3, p. 1192, doi. 10.1093/nar/gkw004
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- Publication type:
- Article
The SIDER database of drugs and side effects.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D1075, doi. 10.1093/nar/gkv1075
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- Publication type:
- Article
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D380, doi. 10.1093/nar/gkv1277
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- Publication type:
- Article
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D286, doi. 10.1093/nar/gkv1248
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- Publication type:
- Article